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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Catalytic Upgrading of Biomass-Derived Compounds via C-C Coupling Reactions: Computational and Experimental Studies of Furan and Acetaldehyde Reactions in HZSM-5
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Galactos: computing the anisotropic 3-point correlation function for 2 billion galaxies
The nature of dark energy and the complete theory of gravity are two central questions currently facing cosmology. A vital tool for addressing them is the 3-point correlation function (3PCF), which probes deviations from a spatially random distribution of galaxies. However, the 3PCF's formidable computational expense has prevented its application to astronomical surveys comprising millions to billions of galaxies. We present Galactos, a high-performance implementation of a novel, O( N 2 ) algorithm that uses a load-balanced k-d tree and spherical harmonic expansions to compute the anisotropic 3PCF. Our implementation is optimized for the Intel Xeon Phi architecture, exploiting SIMD parallelism, instruction and thread concurrency, and significant L1 and L2 cache reuse, reaching 39% of peak performance on a single node. Galactos scales to the full Cori system, achieving 9.8 PF (peak) and 5.06 PF (sustained) across 9636 nodes, making the 3PCF easily computable for all galaxies in the observable universe.
Accessing a P-27 Data Acquisition Computer from an Off-Site Computer Not Owned by LANL
The steps to access a LANL owned P-27 data acquisition (DAQ) computer from off site using a non-LANL computer are documented here. Two connection paths should be possible. The first uses an HTML5 connection directly from portal.lanl.gov, and the steps for this path follow some preliminaries. The second connection path again uses an HTML5 from connection to portal.lan.gov to a virtual Windows desktop to then access our DAQ computers. Instructions for this will be added later.
High Performance Computing and Quantum Computing Integration Framework Architecture and Requirements Document
The HPC/QC Requirements Document presents a comprehensive framework for integrating High Performance Computing (HPC) and Quantum Computing (QC). The framework proposed in this document supports a hybrid quantum-classical computing model that provides application flexibility, and resource abstraction and standardization.
Failure detection in high-performance clusters and computers using chaotic map computations
A programmable media includes a processing unit capable of independent operation in a machine that is capable of executing 10.sup.18 floating point operations per second. The processing unit is in communication with a memory element and an interconnect that couples computing nodes. The programmable media includes a logical unit configured to execute arithmetic functions, comparative functions, and/or logical functions. The processing unit is configured to detect computing component failures, memory element failures and/or interconnect failures by executing programming threads that generate one or more chaotic map trajectories. The central processing unit or graphical processing unit is configured to detect a computing component failure, memory element failure and/or an interconnect failure through an automated comparison of signal trajectories generated by the chaotic maps.
Numerically stable, scalable formulas for parallel and online computation of higher-order multivariate central moments with arbitrary weights
Formulas for incremental or parallel computation of second order central moments have long been known, and recent extensions of these formulas to univariate and multivariate moments of arbitrary order have been developed. Such formulas are of key importance in scenarios where incremental results are required and in parallel and distributed systems where communication costs are high. We survey these recent results, and improve them with arbitrary-order, numerically stable one-pass formulas which we further extend with weighted and compound variants. We also develop a generalized correction factor for standard two-pass algorithms that enables the maintenance of accuracy over nearly the full representable range of the input, avoiding the need for extended-precision arithmetic. We then empirically examine algorithm correctness for pairwise update formulas up to order four as well as condition number and relative error bounds for eight different central moment formulas, each up to degree six, to address the trade-offs between numerical accuracy and speed of the various algorithms. Finally, we demonstrate the use of the most elaborate among the above mentioned formulas, with the utilization of the compound moments for a practical large-scale scientific application.
Neutron and x-ray computed tomography of a natural uranium tristructural isotropic (TRISO) fuel compact
A natural uranium-based, unirradiated tristructural isotropic (TRISO) fuel compact was nondestructively imaged using both X-ray (XCT) and neutron computed tomography (nCT). While XCT of compacts can provide information on fuel kernels, imaging artifacts preclude examination of the graphite matrix. In this work, nCT was used for the first time on a TRISO compact to examine the graphite matrix. A crack was clearly resolved within the graphite matrix, proving that nCT is a viable tool for nondestructive volumetric examination of the matrix material in TRISO fuel compacts. The XCT and nCT data were then fused together to create a more comprehensive dataset containing both matrix and fuel kernels.
Visualization and Quantum Computation of Moire Superconductivity in Bilayer Graphene, Carbon Nanocones and Nanostrips
The purpose of this project is to visualize and study the electronic properties of carbon nanostructures. The principal structures studied are AA and AB (Bernal) stacked graphene bilayers, an 80C nanocone with pentagonal defects at its apex, and a 16C nanoring. Graphene and other based nanostructures have attracted much attention due to their unique electronic properties. For example, bilayer graphene shows superconductivity at certain magic angles of rotation. Open source molecular modeling and visualization programs like SAMSON, Avogadro, and VMD are utilized to generate the structures above. Using bond information in order to find nearest neighbors, an adjacency matrix can be generated from which the energy eigenvalues are solvable and are used to visualize the dispersion relation, free energy, persistent current, Green’s function, and entanglement entropy. The goal of this project is to study the effect of rotation on the electronic properties of bilayer graphene, particularly as it pertains to the magic angle where superconductivity occurs, as well as the electronic properties of the bilayer Moire patterns which emerge due to the superposition of the identical lattices at different angles. An important goal is to incorporate phonon interactions into the tight-binding model for carbon structures, and to utilize quantum based computing as a tool to find the ground state properties of these structures, particularly in the terminating case where boundary conditions have an effect.
Computational Reproducibility of Scientific Workflows at Extreme Scales
We propose an approach for improved reproducibility that includes capturing and relating provenance characteristics and performance metrics, in a hybrid queriable system, the ProvEn server. The system capabilities are illustrated on two use cases: scientific reproducibility of results in the ACME climate simulations and performance reproducibility in molecular dynamics workflows on HPC computing platforms.
Computational design of mixed chirality peptide macrocycles with internal symmetry
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Noise analysis for the Sorkin and Peres tests performed on a quantum computer
We use quantum computers to test the foundations of quantum mechanics through quantum algorithms that implement some of the experimental tests as the basis of the theory's postulates. These algorithms can be used as a test of the physical theory under the premise of a perfect hardware or as a test of the hardware under the premise that quantum theory is correct. In this paper, we show how the algorithms can be used to test the efficacy of a quantum computer in obeying the postulates of quantum mechanics. We study the effect of different types of errors on the results of experimental tests of the postulates. A salient feature of this error analysis is that it is deeply rooted in the fundamentals of quantum mechanics as it highlights how systematic errors affect the quantumness of the quantum computer.
Computational approaches to detect allosteric pathways in transmembrane molecular machines
Many of the functions of transmembrane proteins involved in signal processing and transduction across the cell membrane are determined by allosteric couplings that propagate the functional effects well beyond the original site of activation. Data gathered from breakthroughs in biochemistry, crystallography, and single molecule fluorescence have established a rich basis of information for the study of molecular mechanisms in the allosteric couplings of such transmembrane proteins. The mechanistic details of these couplings, many of which have therapeutic implications, however, have only become accessible in synergy with molecular modeling and simulations. Here, we review some recent computational approaches that analyze allosteric coupling networks (ACNs) in transmembrane proteins, and in particular the recently developed Protein Interaction Analyzer (PIA) designed to study ACNs in the structural ensembles sampled by molecular dynamics simulations. The power of these computational approaches in interrogating the functional mechanisms of transmembrane proteins is illustrated with selected examples of recent experimental and computational studies pursued synergistically in the investigation of secondary active transporters and GPCRs. This article is part of a Special Issue entitled: Membrane Proteins edited by J.C. Gumbart and Sergei Noskov.
X-ray computed tomography analysis of pore deformation in IN718 made with directed energy deposition
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Accelerating Multivariate Functional Approximation Computation with Domain Decomposition Techniques⋆
Modeling large datasets through Multivariate Functional Approximations (MFA) provide an elegant way to handle many visualization and scientific analysis workflows. The process necessitates scalable data partitioning methods to compute MFA representations efficiently without compromising the accuracy or continuity of the reconstructed solution. We propose a domain -decomposed method for computing the MFA with B -spline bases, which reduces the total work per task and uses a restricted Additive Schwarz (RAS) method to converge the control point data degrees -of -freedom along subdomain boundaries. We provide an in-depth analysis of the parallel approach with domain decomposition solvers, aiming to minimize local subdomain error residuals and recover high -order continuity at subdomain interfaces with appropriate choices of knot overlaps. The communication cost, determined by the overlap regions in the RAS implementation, is optimized to recover the numerical error profile of the single subdomain case. Our proposed method stands in contrast to previous methods, which typically only recover either C 0 or at best C 1 continuity for arbitrary B -spline degree expansions, or those that require post -processing to blend discontinuities in the reconstructed data. We demonstrate the effectiveness of our approach using analytical and real -world datasets in 1D, 2D, and 3D through both strong and weak scaling studies. The performance results indicate that the overall cost of computing the approximation is directly proportional to the underlying nearest -neighbor communication implementation, and is only weakly dependent on the overlap region size that determines the size of the messages. This finding underscores the efficiency and scalability of our proposed method, making it a promising solution for handling large datasets in scientific workflows.
Computational material design for Q&P steels with plastic instability theory
In this paper, the deformation limits of Quenching and Partitioning (Q&P) steels are examined with the plastic instability theory. For this purpose, the constituent phase properties of various Q&P steels were first experimentally obtained, and used to estimate the overall tensile stress-strain curves based on the simple rule of mixture (ROM) with the iso-strain and iso-stress assumptions. Plastic instability theory was then applied to the obtained overall stress-strain curves in order to estimate the deformation limits of the Q&P steels. A parametric study was also performed to examine the effects of various material parameters on the deformation limits of Q&P steels. Computational material design was subsequently carried out based on the information obtained from the parametric study. The results show that the plastic instability theory with iso-stress-based stress-strain curve may be used to provide the lower bound estimate of the uniform elongation (UE) for the various Q&P steels considered. The results also indicate that higher austenite stability/volume fractions, less strength difference between the primary phases, higher hardening exponents of the constituent phases are generally beneficial for the performance improvement of Q&P steels, and that various material parameters may be concurrently adjusted in a cohesive way in order to improve the performance of Q&P steel. The information from this study may be used to devise new heat treatment parameters and alloying elements to produce Q&P steels with the improved performance.
Comprehensive Experimental and Computational Spectroscopic Study of Hexacyanoferrate Complexes in Water: From Infrared to X-ray Wavelengths
We present a joint experimental and computational study of the hexacyanoferrate aqueous complexes at equilibrium in the 250 meV to 7.15 keV regime. The experiments include the vibrational spectroscopy of the cyanide ligands, the valence electronic absorption spectra and Fe 1s core hole spectra using X-ray absorption and emission techniques. These experiments are accompanied by density functional theory (DFT) based quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulations and spectroscopy calculations of the experiments spanning the IR to X-ray wavelengths. Our simulations, including explicit solvent effects, across this large energy window allows for a systematic comparison of vibrational, valence electronic and core-level spectra. The analysis reveals how the local solvation environment influences the geometric and electronic structure and impacts the line shape and intensity of the observed spectral features in the infrared, optical and X-ray wavelengths.
Physics for neuromorphic computing
Neuromorphic computing takes inspiration from the brain to create energy-efficient hardware for information processing, capable of highly sophisticated tasks. Systems built with standard electronics achieve gains in speed and energy by mimicking the distributed topology of the brain. Scaling-up such systems and improving their energy usage, speed and performance by several orders of magnitude requires a revolution in hardware. Here, we discuss how including more physics in the algorithms and nanoscale materials used for data processing could have a major impact in the field of neuromorphic computing. We review striking results that leverage physics to enhance the computing capabilities of artificial neural networks, using resistive switching materials, photonics, spintronics and other technologies. We discuss the paths that could lead these approaches to maturity, towards low-power, miniaturized chips that could infer and learn in real time.