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At least 199 records · Page 11

Efficiency of parallel direct optimization

Tremendous progress has been made at the level of sequential computation in phylogenetics. However, little attention has been paid to parallel computation. Parallel computing is particularly suited to phylogenetics because of the many ways large computational problems can be broken into parts that can be analyzed concurrently. In this paper, we investigate the scaling factors and efficiency of random addition and tree refinement strategies using the direct optimization software, POY, on a small (10 slave processors) and a large (256 slave processors) cluster of networked PCs running LINUX. These algorithms were tested on several data sets composed of DNA and morphology ranging from 40 to 500 taxa. Various algorithms in POY show fundamentally different properties within and between clusters. All algorithms are efficient on the small cluster for the 40-taxon data set. On the large cluster, multibuilding exhibits excellent parallel efficiency, whereas parallel building is inefficient. These results are independent of data set size. Branch swapping in parallel shows excellent speed-up for 16 slave processors on the large cluster. However, there is no appreciable speed-up for branch swapping with the further addition of slave processors (>16). This result is independent of data set size. Ratcheting in parallel is efficient with the addition of up to 32 processors in the large cluster. This result is independent of data set size. c2001 The Willi Hennig Society.

NASA Discipline Evolutionary Biology↗

Developing an Enhanced Lightning Jump Algorithm for Operational Use

Overall Goals: 1. Build on the lightning jump framework set through previous studies. 2. Understand what typically occurs in nonsevere convection with respect to increases in lightning. 3. Ultimately develop a lightning jump algorithm for use on the Geostationary Lightning Mapper (GLM). 4 Lightning jump algorithm configurations were developed (2(sigma), 3(sigma), Threshold 10 and Threshold 8). 5 algorithms were tested on a population of 47 nonsevere and 38 severe thunderstorms. Results indicate that the 2(sigma) algorithm performed best over the entire thunderstorm sample set with a POD of 87%, a far of 35%, a CSI of 59% and a HSS of 75%.

Schultz, Christopher J.↗

High Resolution Image Reconstruction from Projection of Low Resolution Images DIffering in Subpixel Shifts

In this paper, we demonstrate a simple algorithm that projects low resolution (LR) images differing in subpixel shifts on a high resolution (HR) also called super resolution (SR) grid. The algorithm is very effective in accuracy as well as time efficiency. A number of spatial interpolation techniques using nearest neighbor, inverse-distance weighted averages, Radial Basis Functions (RBF) etc. used in projection yield comparable results. For best accuracy of reconstructing SR image by a factor of two requires four LR images differing in four independent subpixel shifts. The algorithm has two steps: i) registration of low resolution images and (ii) shifting the low resolution images to align with reference image and projecting them on high resolution grid based on the shifts of each low resolution image using different interpolation techniques. Experiments are conducted by simulating low resolution images by subpixel shifts and subsampling of original high resolution image and the reconstructing the high resolution images from the simulated low resolution images. The results of accuracy of reconstruction are compared by using mean squared error measure between original high resolution image and reconstructed image. The algorithm was tested on remote sensing images and found to outperform previously proposed techniques such as Iterative Back Projection algorithm (IBP), Maximum Likelihood (ML), and Maximum a posterior (MAP) algorithms. The algorithm is robust and is not overly sensitive to the registration inaccuracies.

Simultaenous Retrieval of Surface Roughness Parameters from Combined Active-Passive SMAP Observations

Soil roughness strongly influences processes like erosion, infiltration, moisture and evaporation of soils as well as growth of agricultural plants. An approach to soil roughness based on active-passive microwave covariation is proposed in order to simultaneously retrieve the vertical RMS height (s) and horizontal correlation length (l) of soil surfaces from simultaneously measured radar and radiometer microwave signatures. The approach is based on a retrieval algorithm for active-passive covariation including the improved Integral Equation Method (I2EM). The algorithm is tested with the global active-passive microwave observations of the SMAP mission. The developed roughness retrieval algorithm shows independence of permittivity for > 10 [-] due to the covariation formalism. Results reveal that s and l can be estimated simultaneously by the proposed approach since surface patterns of non-vegetated areas become evident on global scale. In regions with sandy deserts, like the Sahara or the outback in Australia, determined and confirm rather smooth to semi-rough surface roughness patterns with small vertical RMS heights and corresponding higher horizontal correlation lengths.

correlation length↗

Comparison of Snow Mass Estimates from a Prototype Passive Microwave Snow Algorithm, a Revised Algorithm and a Snow Depth Climatology

While it is recognized that no single snow algorithm is capable of producing accurate global estimates of snow depth, for research purposes it is useful to test an algorithm's performance in different climatic areas in order to see how it responds to a variety of snow conditions. This study is one of the first to develop separate passive microwave snow algorithms for North America and Eurasia by including parameters that consider the effects of variations in forest cover and crystal size on microwave brightness temperature. A new algorithm (GSFC 1996) is compared to a prototype algorithm (Chang et al., 1987) and to a snow depth climatology (SDC), which for this study is considered to be a standard reference or baseline. It is shown that the GSFC 1996 algorithm compares much more favorably to the SDC than does the Chang et al. (1987) algorithm. For example, in North America in February there is a 15% difference between the GSFC 198-96 Algorithm and the SDC, but with the Chang et al. (1987) algorithm the difference is greater than 50%. In Eurasia, also in February, there is only a 1.3% difference between the GSFC 1996 algorithm and the SDC, whereas with the Chang et al. (1987) algorithm the difference is about 20%. As expected, differences tend to be less when the snow cover extent is greater, particularly for Eurasia. The GSFC 1996 algorithm performs better in North America in each month than dose the Chang et al. (1987) algorithm. This is also the case in Eurasia, except in April and May when the Chang et al.(1987) algorithms is in closer accord to the SDC than is GSFC 1996 algorithm.

Foster, J. L.↗

A Structural Characterization of Temporal Dynamic Controllability

An important issue for temporal planners is the ability to handle temporal uncertainty. Recent papers have addressed the question of how to tell whether a temporal network is Dynamically Controllable, i.e., whether the temporal requirements are feasible in the light of uncertain durations of some processes. Previous work has presented an O(N5) algorithm for testing this property. Here, we introduce a new analysis of temporal cycles that leads to an O(N4) algorithm.

Morris, Paul↗

Angular-Rate Estimation Using Star Tracker Measurements

This paper presents algorithms for estimating the angular-rate vector of satellites using quaternion measurements. Two approaches are compared, one that uses differentiated quatemion measurements to yield coarse rate measurements which are then fed into two different estimators. In the other approach the raw quatemion measurements themselves are fed directly into the two estimators. The two estimators rely on the ability to decompose the non-linear rate dependent part of the rotational dynamics equation of a rigid body into a product of an angular-rate dependent matrix and the angular-rate vector itself This decomposition, which is not unique, enables the treatment of the nonlinear spacecraft dynamics model as a linear one and, consequently, the application of a Pseudo-Linear Kalman Filter (PSELIKA). It also enables the application of a special Kalman filter which is based on the use of the solution of the State Dependent Algebraic Riccati Equation (SDARE) in order to compute the Kalman gain matrix and thus eliminates the need to propagate and update the filter covariance matrix. The replacement of the elaborate rotational dynamics by a simple first order Markov model is also examined. In this paper a special consideration is given to the problem of delayed quatemion measurements. Two solutions to this problem are suggested and tested. Real Rossi X-Ray Timing Explorer (RXTE) data is used to test these algorithms, and results of these tests are presented.

Azor, R.↗

Angular-Rate Estimation using Star Tracker Measurements

This paper presents algorithms for estimating the angular-rate vector of satellites using quaternion measurements. Two approaches are compared, one that uses differentiated quaternion measurements to yield coarse rate measurements which are then fed into two different estimators. In the other approach the raw quaternion measurements themselves are fed directly into the two estimators. The two estimators rely on the ability to decompose the non-linear rate dependent part of the rotational dynamics equation of a rigid body into a product of an angular-rate dependent matrix and the angular-rate vector itself. This decomposition, which is not unique, enables the treatment of the nonlinear spacecraft dynamics model as a linear one and, consequently, the application of a Pseudo-Linear Kalman Filter (PSELIKA). It also enables the application of a special Kalman filter which is based on the use of the solution of the State Dependent Algebraic Riccati Equation (SDARE) in order to compute the Kalman gain matrix and thus eliminates the need to propagate and update the filter covariance matrix. The replacement of the elaborate rotational dynamics by a simple first order Markov model is also examined. In this paper a special consideration is given to the problem of delayed quaternion measurements. Two solutions to this problem are suggested and tested. Real Rossi X-Ray Timing Explorer (RXTE) data is used to test these algorithms, and results of these tests are presented.

Azor, R.↗

ATLAS Flight Science Receiver Algorithms

This is the basis document for the ATLAS Receiver Algorithms. ATLAS is the single instrument on the ICESat-2 mission. The Receiver (Rx) Algorithms select the signal location in real-time and instruct the hardware to telemeter a vertical band of received time-tags about this signal location. The algorithms are implemented in the Flight Software (FSW) and in the hardware of the Photon Counting Electronics (PCE) cards. The sole purpose of the algorithms is to reduce the telemetry data volume to fit within the downlink constraint while maximizing the probability of downlinking surface signal. All versions of the Receiver Algorithms from version 2.8 onward incorporate our best knowledge of the ATLAS hardware at this time. It presents algorithms that, based on current Simulator testing, satisfy all of the requirements for the Rx Algorithms. Testing during ATLAS Instrument Integration and Testing with the hardware and software implementation of the Rx Algorithms revealed characteristics and responses that required changes to the Rx Algorithms and this document, which are captured in the change record below.All relevant documentation for the Receiver Algorithms can be found on the ICESat-2 Technical Data Management System (TDMS) under the ATLAS Algorithms subsystem.The launch version of the FSW (version 3.1.0) is based upon version 3.7c of this document.

Mcgarry, Jan L.↗

A simultaneous coordinate relaxation algorithm for large, sparse matrix eigenvalue problems

An algorithm is proposed for a scheme of simultaneous coordinate relaxation. A variant of root-shifting coordinate relaxation, this procedure consists of iterating several vectors at the same time, instead of one at a time. Results of application of the algorithm to test matrices are discussed. For many matrix eigenvalue problems for which coordinate relaxation is a viable approach, the present algorithm is more effective than previous implementations of coordinate relaxation. Total central processor operations should be decreased due to significantly improved convergence.

Raffenetti, R. C.↗

An Algorithm for Obtaining the Distribution of 1-Meter Lightning Channel Segment Altitudes for Application in Lightning NOx Production Estimation

An algorithm has been developed to estimate the altitude distribution of one-meter lightning channel segments. The algorithm is required as part of a broader objective that involves improving the lightning NOx emission inventories of both regional air quality and global chemistry/climate models. The algorithm was tested and applied to VHF signals detected by the North Alabama Lightning Mapping Array (NALMA). The accuracy of the algorithm was characterized by comparing algorithm output to the plots of individual discharges whose lengths were computed by hand; VHF source amplitude thresholding and smoothing were applied to optimize results. Several thousands of lightning flashes within 120 km of the NALMA network centroid were gathered from all four seasons, and were analyzed by the algorithm. The mean, standard deviation, and median statistics were obtained for all the flashes, the ground flashes, and the cloud flashes. One-meter channel segment altitude distributions were also obtained for the different seasons.

Peterson, Harold↗

Weather, Climate, and Society: New Demands on Science and Services

A new algorithm has been constructed to estimate the path length of lightning channels for the purpose of improving the model predictions of lightning NOx in both regional air quality and global chemistry/climate models. This algorithm was tested and applied to VHF signals detected by the North Alabama Lightning Mapping Array (NALMA). The accuracy of the algorithm was characterized by comparing algorithm output to the plots of individual discharges whose lengths were computed by hand. Several thousands of lightning flashes within 120 km of the NALMA network centroid were gathered from all four seasons, and were analyzed by the algorithm. The mean, standard deviation, and median statistics were obtained for all the flashes, the ground flashes, and the cloud flashes. Channel length distributions were also obtained for the different seasons.

Source record↗

A circular median filter approach for resolving directional ambiguities in wind fields retrieved from spaceborne scatterometer data

The retrieval algorithm for spaceborne scatterometry proposed by Schultz (1985) is extended. A circular median filter (CMF) method is presented, which operates on wind directions independently of wind speed, removing any implicit wind speed dependence. A cell weighting scheme is included in the algorithm, permitting greater weights to be assigned to more reliable data. The mathematical properties of the ambiguous solutions to the wind retrieval problem are reviewed. The CMF algorithm is tested on twelve simulated data sets. The effects of spatially correlated likelihood assignment errors on the performance of the CMF algorithm are examined. Also, consideration is given to a wind field smoothing technique that uses a CMF.

Schultz, Howard↗

An Impact-Location Estimation Algorithm for Subsonic Uninhabited Aircraft

An impact-location estimation algorithm is being used at the NASA Dryden Flight Research Center to support range safety for uninhabited aerial vehicle flight tests. The algorithm computes an impact location based on the descent rate, mass, and altitude of the vehicle and current wind information. The predicted impact location is continuously displayed on the range safety officer's moving map display so that the flightpath of the vehicle can be routed to avoid ground assets if the flight must be terminated. The algorithm easily adapts to different vehicle termination techniques and has been shown to be accurate to the extent required to support range safety for subsonic uninhabited aerial vehicles. This paper describes how the algorithm functions, how the algorithm is used at NASA Dryden, and how various termination techniques are handled by the algorithm. Other approaches to predicting the impact location and the reasons why they were not selected for real-time implementation are also discussed.

Bauer, Jeffrey E.↗

Heat Capacity Mapping Radiometer (HCMR) data processing algorithm, calibration, and flight performance evaluation

The rationale and procedures used in the radiometric calibration and correction of Heat Capacity Mapping Mission (HCMM) data are presented. Instrument-level testing and calibration of the Heat Capacity Mapping Radiometer (HCMR) were performed by the sensor contractor ITT Aerospace/Optical Division. The principal results are included. From the instrumental characteristics and calibration data obtained during ITT acceptance tests, an algorithm for post-launch processing was developed. Integrated spacecraft-level sensor calibration was performed at Goddard Space Flight Center (GSFC) approximately two months before launch. This calibration provided an opportunity to validate the data calibration algorithm. Instrumental parameters and results of the validation are presented and the performances of the instrument and the data system after launch are examined with respect to the radiometric results. Anomalies and their consequences are discussed. Flight data indicates a loss in sensor sensitivity with time. The loss was shown to be recoverable by an outgassing procedure performed approximately 65 days after the infrared channel was turned on. It is planned to repeat this procedure periodically.

Bohse, J. R.↗

Reconstruction of multiple cracks from experimental electrostatic boundary measurements

An algorithm for recovering a collection of linear cracks in a homogeneous electrical conductor from boundary measurements of voltages induced by specified current fluxes is described. The technique is a variation of Newton's method and is based on taking weighted averages of the boundary data. An apparatus that was constructed specifically for generating laboratory data on which to test the algorithm is also described. The algorithm is applied to a number of different test cases and the results are discussed.

Bryan, Kurt↗

A Collisional Algorithm for Modeling Circumstellar Debris Disks

Many planetary systems harbor circumstellar disks of dust and planetesimals thought to be debris left over from planet formation. These debris disks exhibit a range of morphological features which can arise from the gravitational perturbations of planets. Accurate models of these features, accounting for the interactions of the particles in a disk with each other and with whatever planets they contain, can act as signposts for planets in debris disks that otherwise could not be detected. Such models can also constrain the planet's mass and orbital parameters. Current models for many disks consider the gravitational and radiative effects of the star and planets on the disk, but neglect the morphological consequences of collisional interactions between the planetesimals. Many observed disk features are not satisfactorily explained by the current generation of models. I am developing a new kind of debris disk model that considers both the gravitational shaping of the disk by planets and the inelastic collisions between particles. I will use a hybrid N-body integrator to numerically solve the equations of motion for the particles and planets in the disk. To include the collisional effects, I begin with an algorithm that tests for collisions at each step of the orbit integration and readjusts the velocities of colliding particles. I am adapting this algorithm to the problem at hand by allowing each particle to represent a "swarm" of planetesimals with a range of masses. When the algorithm detects an encounter between swarms, two or three swarms are produced to approximate the range of possible trajectories of the daughter planetesimals. Here I present preliminary results from my collisional algorithm.

Nesvold, Erika↗

An Environment for Hardware-in-the-Loop Formation Navigation and Control Simulation

Recent interest in formation flying satellite systems has spurred a considerable amount of research in the relative navigation and control of satellites. Development in this area has included new estimation and control algorithms as well as sensor and actuator development specifically geared toward the relative control problem. This paper describes a simulation facility, the Formation Flying Testbed (FFTB) at NASA's Goddard Space Flight Center, which allows engineers to test new algorithms for the formation flying problem with relevant GN&C hardware in a closed loop simulation. The FFTB currently supports the injection of GPS receiver hardware into the simulation loop, and support for satellite crosslink ranging technology is at a prototype stage. This closed-loop, hardware inclusive simulation capability permits testing of navigation and control software in the presence of the actual hardware with which the algorithms must interact. This capability provides the navigation or control developer with a perspective on how the algorithms perform as part of the closed-loop system. In this paper, the overall design and evolution of the FFTB are presented. Each component of the FFTB is then described in detail. Interfaces between the components of the FFTB are shown and the interfaces to and between navigation and control software are described in detail. Finally, an example of closed-loop formation control with GPS receivers in the loop is presented and results are analyzed.

Burns, Rich↗