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At least 199 records · Page 11

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DOE OSTI2018

Speculation and replication in temperature accelerated dynamics

Accelerated Molecular Dynamics (AMD) is a class of MD-based algorithms for the long-time scale simulation of atomistic systems that are characterized by rare-event transitions. Temperature-Accelerated Dynamics (TAD), a traditional AMD approach, hastens state-to-state transitions by performing MD at an elevated temperature. Recently, Speculatively-Parallel TAD (SpecTAD) was introduced, allowing the TAD procedure to exploit parallel computing systems by concurrently executing in a dynamically generated list of speculative future states. Although speculation can be very powerful, it is not always the most efficient use of parallel resources. In this paper, we compare the performance of speculative parallelism with a replica-based technique, similar to the Parallel Replica Dynamics method. A hybrid SpecTAD approach is also presented, in which each speculation process is further accelerated by a local set of replicas. Finally and overall, this work motivates the use of hybrid parallelism whenever possible, as some combination of speculation and replication is typically most efficient.

36 MATERIALS SCIENCE↗

DOE OSTI2022

The importance of long-timescale simulations for driven systems: An example of He bubble growth at a W GB

Accelerated Molecular Dynamics (AMD) is used to study complex systems under realistic conditions by extending the timescales accessible by Molecular Dynamics. However, some studies rely instead on driving atomic systems harder with higher temperature, faster growth, etc. Here, we study He bubble growth at a W grain boundary as an illustration of harnessing AMD methods to avoid consequences of over-driving the system. The growth mechanisms observed for a He bubble grown under realistic conditions are compared to bubbles-grown orders of magnitude faster, at rates typical of conventional molecular dynamics simulations. We find that progressive growth mechanisms and bubble structures depend on the rate at which the bubble is grown providing further evidence that care must be taken when simulating the dynamics of driven systems such as this one.

36 MATERIALS SCIENCE↗

DOE OSTI2018

ATDM ASD report to ECP FY18Q4

Kokkos and DARMA teams worked together on several significant proposals for the C++ standards body, including the MDSpan and Exectutors proposals. This work has potential for long-term impact into the language standard reflecting core abstractions needed for our HPC programming and development efforts. Kokkos team collaborating with AMD via the Path Forward effort. This is advancing Kokkos support for [AMD] backends, necessary for future exascale/HPC architectures.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

ROCM+Intel-PathForward+RemoteSpaces Development

This report documents the completion of milestone STPRO4-25 Harden and optimize the ROCm based AMD GPU backend, develop a prototype backend for the Intel ECP Path Forward architecture, and improve the existing prototype Remote Memory Space capabilities. The ROCM code was hardened up to the point of passing all Kokkos unit tests - then AMD deprecated the programming model, forcing us to start over in FY20 with HIP. The Intel ECP Path Forward architecture prototype was developed with some initial capabilities on simulators - but plans changed, so that work will not continue. Instead SYCL will be developed as a backend for Aurora. Remote Spaces was improved. Development is ongoing part of a collaboration with NVIDIA.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

Low Cost Rare Earth Element (REE) Recovery from Acid Mine Drainage Sludge

In this research effort, three core technologies were evaluated for REE concentration and recovery: (1) Nanofiltration (NF), (2) Electrically conductive membranes for induced rare earth oxide (REO) precipitation, (3) dendrimer-based sorbents for REE capture. The NF showed excellent selectivity between REE components and monovalent ionic salts such as K and Na. For all AMD samples, iron selectivity is a critical challenge since it is the highest concentration bulk constituent. Membrane electrodeposition approach shows promise for scandium and cerium recovery, but iron selectivity not observed. This technology may therefore be more appropriate REE recovery technology for non-iron rich streams such as coal ash. P-dendrimer derived sorbent shows promise for aqueous application, with high sorption capacity for iron demonstrated, and pH tunable selectivity against REE sorption. Although in some cases excellent selectivity for REE was observed, the REE concentrations from all four AMD sites was low enough that the 2wt% final goal was not attained.

01 COAL, LIGNITE, AND PEAT↗

DOE OSTI2020

Quantitative Performance Assessment of Proxy Apps and Parents (ECP Proxy App Project Milestone ADCD-504-9)

This report presents highlights of these efforts. Section 2 describes work that has been done to compare the performance of proxy applications on AMD MI60 vs. Nvidia V100 GPUs. So far only a small set of ECP proxies are running on AMD GPUs, but we will continue to expand this analysis as additional proxies become available. We find that although the MI60 and V100 have nearly the same measured memory bandwidth, memory bound proxy app kernels perform 20-30% worse on the MI60. Further work is needed to refine these comparisons to determine whether the root cause is due to differences in the hardware, software stack, platform specific optimization, or some combination of the three. Section 3 describes our continuing effort to find methods to accurately assess the similarity of proxies and parents. We have recently seen very encouraging results using a cosine similarity metric. This technique uses the angle between two vectors of hardware performance counters to characterize the similarity (or difference) between two applications or proxies. We show not only that several widely used proxies are highly similar to their parents, but also that they differ from non-related codes. We also show that cosine similarity can be used to identify gaps and redundancies in suites and even to gain insight into the effects of architectural differences between platforms. Our work on assessing the Exascale toolchain is ongoing. Our successes with performance measurement tools are evident from the data provided in this report. However, our assessments across the broader tool chain are still too incomplete to provide a meaningful report at this time. We will continue to assess tools and work with vendors and third party developers as issues are identified.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Dosimeter Area Monitoring Program (DAMP) Technical Basis Document

This document provides a technical basis for establishing a Dosimetry-based Area Monitoring Program (DAMP) at Lawrence Livermore National Laboratory (LLNL). A DAMP is part of a comprehensive routine monitoring program and provides information about radiation levels inside and outside of Radiologically-Controlled Areas (RCAs). The routine, hand-held radiation survey program driven by the Health Physics Discipline Action Plan (HP-DAP) helps to ensure radiological conditions within RCAs are well-characterized and routinely monitored; however, such surveys are a snapshot in time, whereas area monitoring dosimeters (AMDs) continuously monitor radiation doses in the areas where they are installed. Together, data from the hand-held radiation surveys and the DAMP provides a comprehensive picture of radiation environment at LLNL. A DAMP helps to verify the effectiveness of established engineered and administrative controls while documenting that radiation doses in RCAs are below that which requires individual monitoring. This document establishes the basis for determining which model of dosimeter to use, the exchange frequency, the occupancy factor, monitoring locations, and a method for evaluating AMD results.

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2023

Batched Sparse Linear Algebra (Final Report for Subcontract B648960)

This report finalizes design specifications for developing batched kernels for small tensor operations for unassembled matrix-free iterative solvers, batched solvers for partially assembled operators, and batched solvers with support for various sparse formats. The outcome of the project milestones is a set of interfaces to Batched Sparse LA solvers running on hardware accelerators for use in ECP Libraries and Applications. It is part of the development of sparse batched kernels, solvers/preconditioners as well as creating interoperability in xSDK libraries with sparse and dense batched functions to benefit ECP applications. The participants included representatives from ECP libraries (not limited to the xSDK project), applications, and vendors (AMD, Intel, and NVIDIA). Batched sparse linear algebra solvers form the new frontier for algorithmic development and performance engineering. Many applications (ECP and non-ECP alike) require simultaneous solutions of small linear systems of equations that are structurally sparse. To move towards high hardware utilization, it is important to provide these applications with appropriate interfaces to efficient batched sparse solvers running on modern hardware accelerators. We present interface designs in use by HPC software libraries supporting batched sparse linear algebra and the development of sparse batched kernel codes for solvers and preconditioners. We also address the potential interoperability opportunities to keep the software portable between the major hardware accelerators from AMD, Intel, and NVIDIA. The presented interface specifications includes batched band, sparse iterative, and sparse direct solvers. This report summarizes progress in Kokkos Kernels and the xSDK libraries MAGMA, Ginkgo, hypre, SUNDIALS, and SuperLU_dist.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Ristra Project FY23 L2 Milestone Report, Rev.1: MRT #8541: Multiphysics Scaling on EAS-3

The findings of this report were used to close out the ATDM milestone MRT# 8541, which was designed to demonstrate readiness of ATDM multiphysics codes for mission-relevant work on ATS-4, El Capitan. To this end, the closure criteria were to run a 3D shaped charge problem at scale up to 50% of the El Capitan early-access system, RZVernal (AMD Trento CPUs and AMD MI-250X GPUs), demonstrate scalability, and document challenges with the software stack and environment. LANL’s approach to this milestone was to test our modular software capability by developing an entirely new code, Moya, built upon our FleCSI framework. The physics capability and the GPU infrastructure needed for the shaped charge problem on GPUs was added to Moya, and the required calculations were performed at scale. Moya showed good scaling without any fine-tuning of GPU kernels; there is still significant room for performance enhancements, especially for the Legion backend. Tied up in this L2 milestone was a closeout of KPP-3s for the ECP ST Projects at LANL; this material will be covered in a separate document.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Targeted Biomining and Machine Learning Approaches in Critical Minerals Revealed by a Biogeochemical Survey of a Coal Mine Drainage Remediation System

Abandoned coal mine drainage (AMD) remediation systems in Pennsylvania can concentrate critical minerals and materials (CMM) at levels comparable to mining-grade ores. Remediation systems have varying engineering features and are open to the environment, resulting in diverse microbial colonization and seasonal climate influences that may impact CMM speciation. The location of CMMs, the types of bacterial communities tolerant of these pollutant conditions, and the influence of localized climate on CMM rich remediation systems are not well characterized. Through a one-year spatiotemporal survey of biogeochemistry at a remediation system, we have initiated the process to address these questions. Rare Earth Elements (REE) ranged 180-1,200 ppm and greater than 1,500 bacterial ASVs were classified via 16S sequencing. Analyses indicate biogeochemical differences are heavily influenced by engineering features. Additionally, REE precipitants correlate strongly with the elements Al, Cu, Zn, Be, and U. Unearthing these trends has refined our line of inquiry to explore biological mining opportunities more closely with these metals. Furthermore, we created a Machine Learning Model for predicting AMD REE content, with 89% accuracy, using the data from this study and several others. Further training data is required to create a more reputable model. Recently, global research efforts have prioritized modeling work or the use of the few historical surveys to design experiments. Through our data, we challenge this approach, emphasizing the importance of expanding fundamental survey efforts prior to advanced product design and experimentation.

critical minerals↗

DOE OSTI2026

Overview of NLR Automated Mobility District Implementation Research - Phases I, II, and III. The Convergence of Automation, Electrification, and On-Demand Services: Enabling Resilient Automated Mobility Districts

A research program by the National Renewable Energy Laboratory has been investigating the implementation prospects for fully automated passenger transport systems that are deployed to operate within dense urban settings, referred to as Automated Mobility Districts (AMDs). An AMD emphasizes the deployment of automated vehicles (AV) passenger transport services within a dense urban setting and other major activity centers with intense passenger origin-destination demand patterns, such as those found in large business districts, airports, and university and medical campuses. Phase I and II surveyed 10 early deployment sites and subsequently collected and evaluated the lessons learned from these early deployment sites, with particular attention to fleet operations, impacts of service reliability, and vehicle technology evolution as the field of companies was being progressively winnowed by the challenges of full automation.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2020

Dynamical Instabilities in Systems of Multiple Short-period Planets Are Likely Driven by Secular Chaos: A Case Study of Kepler-102

We investigated the dynamical stability of high-multiplicity Kepler and K2 planetary systems. Our numerical simulations find instabilities in ∼20% of the cases on a wide range of timescales (up to 5 × 10{sup 9} orbits) and over an unexpectedly wide range of initial dynamical spacings. To identify the triggers of long-term instability in multiplanet systems, we investigated in detail the five-planet Kepler-102 system. Despite having several near-resonant period ratios, we find that mean-motion resonances are unlikely to directly cause instability for plausible planet masses in this system. Instead, we find strong evidence that slow inward transfer of angular momentum deficit (AMD) via secular chaos excites the eccentricity of the innermost planet, Kepler-102 b, eventually leading to planet–planet collisions in ∼80% of Kepler-102 simulations. Kepler-102 b likely needs a mass ≳0.1 M {sub ⊕}, hence a bulk density exceeding about half Earth’s, in order to avoid dynamical instability. To investigate the role of secular chaos in our wider set of simulations, we characterize each planetary system’s AMD evolution with a “spectral fraction” calculated from the power spectrum of short integrations (∼5 × 10{sup 6} orbits). We find that small spectral fractions (≲0.01) are strongly associated with dynamical stability on long timescales (5 × 10{sup 9} orbits) and that the median time to instability decreases with increasing spectral fraction. Our results support the hypothesis that secular chaos is the driver of instabilities in many nonresonant multiplanet systems and also demonstrate that the spectral analysis method is an efficient numerical tool to diagnose long-term (in)stability of multiplanet systems from short simulations.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1983

A graphics subsystem retrofit design for the bladed-disk data acquisition system

A graphics subsystem retrofit design for the turbojet blade vibration data acquisition system is presented. The graphics subsystem will operate in two modes permitting the system operator to view blade vibrations on an oscilloscope type of display. The first mode is a real-time mode that displays only gross blade characteristics, such as maximum deflections and standing waves. This mode is used to aid the operator in determining when to collect detailed blade vibration data. The second mode of operation is a post-processing mode that will animate the actual blade vibrations using the detailed data collected on an earlier data collection run. The operator can vary the rate of payback to view differring characteristics of blade vibrations. The heart of the graphics subsystem is a modified version of AMD's ""super sixteen'' computer, called the graphics preprocessor computer (GPC). This computer is based on AMD's 2900 series of bit-slice components.

Carney, R. R.↗

NASA NTRS1988

A direct-execution parallel architecture for the Advanced Continuous Simulation Language (ACSL)

A direct-execution parallel architecture for the Advanced Continuous Simulation Language (ACSL) is presented which overcomes the traditional disadvantages of simulations executed on a digital computer. The incorporation of parallel processing allows the mapping of simulations into a digital computer to be done in the same inherently parallel manner as they are currently mapped onto an analog computer. The direct-execution format maximizes the efficiency of the executed code since the need for a high level language compiler is eliminated. Resolution is greatly increased over that which is available with an analog computer without the sacrifice in execution speed normally expected with digitial computer simulations. Although this report covers all aspects of the new architecture, key emphasis is placed on the processing element configuration and the microprogramming of the ACLS constructs. The execution times for all ACLS constructs are computed using a model of a processing element based on the AMD 29000 CPU and the AMD 29027 FPU. The increase in execution speed provided by parallel processing is exemplified by comparing the derived execution times of two ACSL programs with the execution times for the same programs executed on a similar sequential architecture.

Carroll, Chester C.↗

NASA NTRS1987

Robustness of active modal damping of large flexible structures

The method of active modal damping (AMD) is reviewed, and the pinhole/occulter facility (P/OF) is presented as a design example. This system is a large space system composed of a flexible beam, a gimbal-pointing system, and an optical alignment system mounted in the Shuttle cargo bay and excited by typical Shuttle disturbances. The AMD system performance is compared with that of a series-compensated control system.

Greene, Michael↗

NASA NTRS2002

Non-Invasive Health Diagnostics using Eye as a 'Window to the Body'

As a 'window to the body', the eye offers the opportunity to use light in various forms to detect ocular and systemic abnormalities long before clinical symptoms appear and help develop preventative/therapeutic countermeasures early. The effects of space travel on human body are similar to those of normal aging. For example, radiation exposure in space could lead to formation of cataracts and cancer by damaging the DNA and causing gene mutation. Additionally, the zero-gravity environment causes fluid shifts in the upper extremities of the body and changes the way blood flows and organ system performs. Here on Earth, cataract, age-related macular degeneration (AMD), diabetic retinopathy (DR), and glaucoma are major eye diseases and are expected to double in next two decades. To detect, prevent, and treat untoward effects of prolonged space travel in real-time requires the development of non-invasive diagnostic technologies that are compact and powerful. We are developing fiber-optic sensors to evaluate the ocular tissues in health, aging, and disease employing the techniques of dynamic light scattering (cataract, uveitis, Alzheimer's, glaucoma, DR, radiation damage, refractive surgery outcomes), auto-fluorescence (aging, DR), laser-Doppler flowmetry (choroidal blood flow), Raman spectroscopy (AMD), polarimetry (diabetes), and retinal oximetry (occult blood loss). The non-invasive feature of these technologies integrated in a head-mounted/goggles-like device permits frequent repetition of tests, enabling evaluation of the results to therapy that may ultimately be useful in various telemedicine applications on Earth and in space.

Ansari, Rafat R.↗

NASA NTRS2006

Progress and Plans in Support of the Polar Community

Feedback provided by the Antarctic community has proven instrumental in positively influencing the direction of the GCMD's development. For example, in response to requests for a stand alone metadata authoring tool, a new shareable software package called docBUILDER solo will be released to the public in March 2006. This tool permits researchers to document their data during experiments and observational periods in the field. The international polar community has also played a key role in encouraging support for the foreign language character set in the metadata display and tools (10% of the records in the AMD hold foreign characters). In the upcoming release, the full ISO character set, which also includes mathematical symbols, will be supported. Additional upgrades include the ability for users to search for data sets based on pre-selected temporal and spatial resolution ranges. Data providers are strongly encouraged to populate the resolution fields for their data sets, although these fields are not currently required. In prior versions, browser incompatibilities often resulted in unreliable performance for users attempting to initiate a spatial search using a map based on Java applet technology. The GCMD will offer an integrated Google map and date search, replacing the applet technology and enhancing the geospatial and temporal searches. It is estimated that 30% of the records in the AMD have direct access to data. A growing number of these records can be accessed through data service links. Related data services are therefore becoming valuable assets in facilitating the use and visualization of data. Users will gain the ability to refine services using the same options as those available for data set searches. Data providers are encouraged to describe available data-related services through the directory. Future plans include offering web services through a SOAP interface and extending semantic queries for the polar regions through the use of ontologies. The Open Archives Initiative's (OAI) Protocol for Metadata Harvesting (PMH) has been successfully tested with several organizations and appears to be a prime candidate for sharing metadata within the community. The GCMD anticipates contributing to the design of the data management system for the International Polar Year and to the ongoing efforts in the years to come. Further enhancements will be discussed at the meeting.

Olsen, Lola M.↗

NASA NTRS2011

AGN Unification, X-Ray Absorbers and Accretion Disk MHD Winds

We present the 2D photoionization structure of the MHD winds of AGN accretion disks. We focus our attention on a specific subset of winds, those with poloidal currents that lead to density profiles n(r) \propto 1/r. We employ the code XSTAR to compute the local ionization balance, emissivities and opacity which are then used in the self-consistent transfer of radiation and ionization of a host of ionic species of a large number of elements over then entire poloidal plane. Particular attention is paid to the Absorption Measure Distribution (AMD), namely their hydrogen-equivalent column of these ions per logarithmic 7 interval, dN_H/dlog ? (? = L/n(r)r(sup 2) is the ionization parameter), which provides a measure of the winds' radial density profiles. For the given density profile, AMD is found to be independent of ?, in good agreement with analyses of Chandra and XMM data, suggesting the specific profile as a fundamental AGN property. Furthermore, the ratio of equatorial to polar column densities of these winds is \simeq 10(exp 4); as such, it is shown they serve as the "torus" necessary for AGN unification with phenomenology consistent with the observations. The same winds are also shown to reproduce the observed columns and velocities of C IV and Fe XXV of SAL QSOs once the proper ionizing spectra and inclination angles are employed.

Kazanas, Demos↗