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DOE OSTI2017

Bayesian forecasting and uncertainty quantifying of stream flows using Metropolis–Hastings Markov Chain Monte Carlo algorithm

This paper presents a Bayesian approach using Metropolis-Hastings Markov Chain Monte Carlo algorithm and applies this method for daily river flow rate forecast and uncertainty quantification for Zhujiachuan River using data collected from Qiaotoubao Gage Station and other 13 gage stations in Zhujiachuan watershed in China. The proposed method is also compared with the conventional maximum likelihood estimation (MLE) for parameter estimation and quantification of associated uncertainties. While the Bayesian method performs similarly in estimating the mean value of daily flow rate, it performs over the conventional MLE method on uncertainty quantification, providing relatively narrower reliable interval than the MLE confidence interval and thus more precise estimation by using the related information from regional gage stations. As a result, the Bayesian MCMC method might be more favorable in the uncertainty analysis and risk management.

58 GEOSCIENCES↗

DOE OSTI2021

Application of remote sensing precipitation data and the $\mathrm{CONNECT}$ algorithm to investigate spatiotemporal variations of heavy precipitation: Case study of major floods across Iran (Spring 2019)

In recent years, the number of floods following unprecedented rainfall events have increased in Iran during early spring (March 21st to April 20th, referred to in Iran as the month of “Farvadin”). While numerous studies have addressed changes in climate extremes and precipitation trends at different temporal scales from daily to annual across the country, analyses of short-duration and heavy precipitation, especially during recent years, are rarely considered. Furthermore, most studies investigate the variations in extremes and total precipitation using a limited number of synoptic weather stations across Iran. Here this study assesses the variations in heavy precipitation (precipitation with intensities greater than or equal to 3 mm/3 h) at 0.04° spatial and 3-hourly temporal resolution during the month of Farvardin. In addition, the effect of atmospheric river conditions over Iran and their possible link to intensifying heavy precipitation is explored. For this purpose, the CONNected-objECT (CONNECT) algorithm is applied on a precipitation dataset, Precipitation Estimation from Remotely Sensed Information Using Artificial Neural Networks-Cloud Classification System (PERSIANN-CCS), and an Integrated Water Vapor Transport (IVT) dataset from the NASA Modern-Era Retrospective Analysis for Research and Applications Version-2 (MERRA-2). The results suggest that the increase in the number of floods in recent years is related to the increase in the intensity and volume of heavy precipitation events, although the frequency and duration of heavy precipitation events have not changed significantly. Furthermore, the results show that atmospheric river conditions over the country are present during the same window as each year’s most extreme events. It is found that 8 out of 13 of the largest ARs over Iran come from moisture plumes with pathways over the African and Red Sea.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2012

Correlation of dosimetric parameters obtained with the analytical anisotropic algorithm and toxicity of chest chemoradiation in lung carcinoma

The purpose of this study was to analyze and revisit toxicity related to chest chemoradiotherapy and to correlate these side effects with dosimetric parameters obtained using analytical anisotropic algorithm (AAA) in locally unresectable advanced lung cancer. We retrospectively analyzed data from 47 lung cancer patients between 2005 and 2008. All received conformal 3D radiotherapy using high-energy linear accelerator plus concomitant chemotherapy. All treatment planning data were transferred into Eclipse 8.05 (Varian Medical Systems, Palo Alto, CA) and dosimetric calculations were performed using AAA. Thirty-three patients (70.2%) developed acute pneumopathy after radiotherapy (grades 1 and 2). One patient (2.1%) presented with grade 3 pneumopathy. Thirty-one (66%) presented with grades 1-2 lung fibrosis, and 1 patient presented with grade 3 lung fibrosis. Thirty-four patients (72.3%) developed grade 1-2 acute oesophagic toxicity. Four patients (8.5%) presented with grades 3 and 4 dysphagia, necessitating prolonged parenteral nutrition. Median prescribed dose was 64 Gy (range 50-74) with conventional fractionation (2 Gy per fraction). Dose-volume constraints were respected with a median V20 of 23.5% (maximum 34%) and a median V30 of 17% (maximum 25%). The median dose delivered to healthy contralateral lung was 13.1 Gy (maximum 18.1 Gy). At univariate analysis, larger planning target volume and V20 were significantly associated with the probability of grade {>=}2 radiation-induced pneumopathy (p = 0.022 and p = 0.017, respectively). No relation between oesophagic toxicity and clinical/dosimetric parameters could be established. Using AAA, the present results confirm the predictive value of the V20 for lung toxicity as already demonstrated with the conventional pencil beam convolution approach.

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2015

Optimization of the magnetic horn for the nuSTORM non-conventional neutrino beam using the genetic algorithm

This paper describes the strategy for optimizing the magnetic horn for the neutrinos from STORed Muons (nuSTORM) facility. The nuSTORM magnetic horn is the primary collection device for the secondary particles generated by bombarding a solid target with 120 GeV protons. As a consequence of the non-conventional beamline designed for nuSTORM, the requirements on the horn are different from those for a conventional neutrino beamline. At nuSTORM, muons decay while circulating in the storage ring, and the detectors are placed downstream of the production straight so as to be exposed to the neutrinos from muon decay. nuSTORM aims at precisely measuring the neutrino cross sections, and providing a definitive statement about the existence of sterile neutrinos. The nuSTORM horn aims at focusing the pions into a certain phase space so that more muons from pion decay can be accepted by the decay ring. The paper demonstrates a numerical method that was developed to optimize the horn design to gain higher neutrino flux from the circulating muons. A Genetic Algorithm (GA) was applied to the simultaneous optimization of the two objectives in this study. In conclusion, the application of the technique discussed in this paper is not limited to either the nuSTORM facility or muon based facilities, but can be used for other neutrino facilities that use magnetic horns as collection devices.

43 PARTICLE ACCELERATORS↗

DOE OSTI2019

RF design of APEX2 two-cell continuous-wave normal conducting photoelectron gun cavity based on multi-objective genetic algorithm

High brightness, high repetition rate electron beams are key components for optimizing the performance of next generation scientific instruments, such as MHz-class X-ray Free Electron Laser (XFEL) and Ultra-fast Electron Diffraction/Microscopy (UED/UEM). In the Advanced Photo-injector EXperiment (APEX)at Berkeley Lab, a photoelectron gun based on a 185.7 MHz normal conducting re-entrant RF cavity, has been proven to be a feasible solution to provide high brightness, high repetition rate electron beam for both XFEL and UED/UEM. Based on the success of APEX, a new electron gun system, named APEX2, has been under development to further improve the electron beam brightness. For APEX2, we have designed a new 162.5 MHz two-cell photoelectron gun and achieved a significant increase on the cathode launching field and the beam exit energy. For a fixed charge per bunch, these improvements will allow for the emittance reduction and hence to an increased beam brightness. The design of APEX2 gun cavity is a complex problem with multiple design goals and restrictions, some even competing each other. In conclusion, for a systematic and comprehensive search for the optimized cavity geometry, we have developed and implemented a novel optimization method based on the Multi-Objective Genetic Algorithm (MOGA).

47 OTHER INSTRUMENTATION↗

DOE OSTI2024

Heat transfer optimization of uo 2 -mo fuel using genetic algorithms

Two genetic algorithm (GA) methods were applied to thermal finite element models to optimize the heat transfer efficacy of a UO 2 -Mo composite fuel pellet with typical pressurized water reactor fuel geometry. Mo additions to UO 2 have been shown to increase the thermal conductivity, thus reducing centerline temperatures and temperature gradients. Previous studies evaluated uniformly dispersed Mo or continuous Mo internal geometries (e.g., fins, plates, discs) that were selected using engineering intuition. The current study uses two different implementations of the same GA to optimize Mo placement and minimize the fuel temperature with the only constraint being a maximum 10% Mo volume fraction. One approach superimposed Mo line elements onto the monolithic UO 2 pellet model, and the other converted entire UO 2 volume elements to Mo. The former method generated 1D heat transfer connections between nodes, whereas the latter method allowed for the formation of 3D structures. Features of the optimal fuel design produced by the GAs included dispersed Mo near the centerline that shifted the peak fuel temperature outward by 0.6 mm, Mo chains in the high-heat-flux region in the mid-to-outer radial zone, and a large continuous structure that spanned the full radius and height of the pellet and accounted for 87.7 % of the total Mo in the pellet. Analysis of this design indicates that the optimal Mo configuration is a balance between creating continuous heat transfer pathways and optimally dispersing Mo to minimize the heat transfer distance through UO 2 . This architecture ultimately produced an effective thermal conductivity of 11.3 W/m·K under the assumed boundary conditions. This result is higher than any previous values from the literature. In conclusion, potential fabrication methods and challenges are discussed in addition to the implications on fuel performance.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2013

Genetic algorithm prediction of crystal structure of metastable Si-IX phase

We performed genetic algorithm search for the atomic structure of the long Lime unsolved Si-IX phase. We found two new structures with space groups of P4(2)/m and P-4, respectively, which have lattice parameters in excellent agreement with the experimental data. The phonon calculations showed that the P4(2)/m structure exhibits a soft phonon mode, while the P-4 structure is dynamically stable. Our calculation also showed that the P-4 structure is a meta-stable structure in a pressure range from 0 to 40 GPa, The Si-IX phase could be a mixed phase consisting of the P4(2)/m and the P-4 structures. Published by Elsevier Ltd.

36 MATERIALS SCIENCE↗

DOE OSTI2023

Small bimetallic clusters Agn-1M (M = Au, Co, Cu, Ni, Pd, Pt; n = 3, 9, 15): Density functional theory and genetic algorithm

We investigated the effect of size and composition on the properties of bimetallic nanoclusters. The geometric structures, stabilities, and electronic properties of size-selected Ag n-1 M (M = Au, Co, Cu, Ni, Pd, Pt; n = 3, 9, 15) bimetallic nanoclusters are systematically analyzed using spin-polarized density functional theory (DFT) within the generalized gradient approximation (GGA). We determine the most stable geometries for these clusters using a genetic algorithm (GA) in combination with DFT. Our results show that doping pure silver clusters with an M atom (transition metal), referred to as a “guest atom”, increases the stability as compared to pure Ag n (n = 3, 9, 15) clusters. The results for various properties including formation energy per atom, electronic structure, magnetic moments, and vibrational density of states (VDOS) are evaluated as a function of both size and composition of the system. The adsorption of selected bimetallic clusters on hydroxylated alumina substrate shows weak binding and minor changes in geometric properties except for Ag 8 Pt.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2019

Acoustic cloaking: Geometric transform, homogenization and a genetic algorithm

A general process is proposed to experimentally design anisotropic inhomogeneous metamaterials obtained through a change of coordinates in the Helmholtz equation. The method is applied to the case of a cylindrical transformation that allows cloaking to be performed. To approximate such complex metamaterials we apply results of the theory of homogenization and combine them with a genetic algorithm. To illustrate the power of our approach, we design three types of cloaks composed of isotropic concentric layers structured with three types of perforations: curved rectangles, split rings and crosses. These cloaks have parameters compatible with existing technology and they mimic the behavior of the transformed material. Numerical simulations have been performed to qualitatively and quantitatively study the cloaking efficiency of these metamaterials.

36 MATERIALS SCIENCE↗

DOE OSTI2015

Compression Algorithm Analysis of In-Situ (S)TEM Video: Towards Automatic Event Detection and Characterization

Precise analysis of both (S)TEM images and video are time and labor intensive processes. As an example, determining when crystal growth and shrinkage occurs during the dynamic process of Li dendrite deposition and stripping involves manually scanning through each frame in the video to extract a specific set of frames/images. For large numbers of images, this process can be very time consuming, so a fast and accurate automated method is desirable. Given this need, we developed software that uses analysis of video compression statistics for detecting and characterizing events in large data sets. This software works by converting the data into a series of images which it compresses into an MPEG-2 video using the open source “avconv” utility [1]. The software does not use the video itself, but rather analyzes the video statistics from the first pass of the video encoding that avconv records in the log file. This file contains statistics for each frame of the video including the frame quality, intra-texture and predicted texture bits, forward and backward motion vector resolution, among others. In all, avconv records 15 statistics for each frame. By combining different statistics, we have been able to detect events in various types of data. We have developed an interactive tool for exploring the data and the statistics that aids the analyst in selecting useful statistics for each analysis. Going forward, an algorithm for detecting and possibly describing events automatically can be written based on statistic(s) for each data type.

algorithm analysis↗

DOE OSTI2020

Finite-Temperature Structures of Supported Subnanometer Catalysts Inferred via Statistical Learning and Genetic Algorithm-Based Optimization

Single-atom catalysts (SACs) minimize noble metal utilization and can alter the activity and selectivity of supported metal nanoparticles. However, the morphology of active centers, including single atoms and subnanometer clusters of a few atoms, remains elusive due to experimental challenges. The computational cost to describe numerous cluster shapes and sizes makes direct first-principles calculations impractical. We present a computational framework to enable structure determination for single-atom and subnanometer cluster catalysts. As a case study, we obtained the low energy structures of Pd n (n = 1-21) clusters supported on CeO 2 (111), which are critical components of automobile three-way catalysts. Trained on density functional theory data, a three-dimensional cluster expansion is established using statistical learning to describe the Hamiltonian and predict energies of supported Pdn clusters of any structure. Low energy stable and metastable structures are identified using a Metropolis Monte Carlo-based genetic algorithm in the canonical ensemble at 300 K. We observe that supported single atoms sinter to form bilayer clusters and large cluster isomers share similarities in both shape and energy, and elucidate the significance of the support and microstructure on cluster stability. We discovered a simple surrogate structure-energy model, where the energy per atom scales with the square root of the average first coordination number, which can be used to estimate energies and compare the stability of clusters. Our framework, applicable to any metal/support system, fills an important methodological gap to predict the stability of supported metal catalysts in the subnanometer regime.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2026

Adsorption Hysteresis Under Control: Tuning Host–Guest Interactions via a Genetic Algorithm

Mesoporous adsorbent materials offer a large volumetric capacity; however, cyclic adsorption/desorption processes in these systems often suffer from hysteresis and may require a significant pressure swing to access this capacity. To mitigate hysteresis, a proposed strategy is to include nucleation sites on the walls of the mesoporous material to facilitate droplet and bubble formation, lowering the free energy barriers to the respective phase transitions. It is unclear, however, what combination of adsorbate− adsorbent interactions and spatial patterning would be beneficial for a given application, considering that improvements to some sorption properties may come at the expense of other attributes. To understand these interconnected observables, we examine two model systems, planar-slit and cylindrical pores with tunable interaction sites, using GPU-accelerated transition matrix Monte Carlo simulations. The simulations provide a free energy map of the pressure−adsorption space in a matter of minutes, which we use to track adsorption isotherm characteristics as a function of adsorbent properties. We then leverage the rapid acquisition of simulation data to construct a genetic algorithm to iteratively modify interaction sites of the slit-pore wall to minimize the hysteresis of this system without sacrificing uptake. We find that the adsorption branch of the isotherm is easily modulated via the average host−guest interaction strength, but desorption is only adjustable if there is a suitable bubble nucleation site. Within the context of a slit-pore system, we identify relative interaction strengths and patch sizes required to gain control over both branches of the hysteresis loop.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2023

Modeling Wavelength Dependent Mid-infrared (5.5–25 μm) Optical Constants of Silicate Glasses: A Genetic Algorithm Approach

Wavelength-dependent mid-infrared (400–1,800 cm -1 ; 5.56–25 μm) optical constants (real and imaginary indices of refraction; n and k) are determined using reflectance spectra at a spectral sampling of 4 cm -1 for several silicate glasses of varying SiO 2 wt% which include (a) basaltic volcanic glass from Kilauea, Hawaii, (b) synthetic andesite, (c) two synthetic dacites, (d) obsidian volcanic glass from Mount Lassen, California, (e) synthetic rhyodacite, and (f) rhyolitic volcanic glass from Mexico. Because glasses are optically isotropic, no specific orientation was required for spectral measurements, and polished glass samples were measured at random orientations using micro-FTIR spectrometer. Lorentz-Lorenz dispersion theory and Fresnel reflectance model for high symmetry materials were used to model the optical constants by optimizing oscillator parameters in modeled spectra to match laboratory spectra. A genetic algorithm (GA) approach automatically finds the natural oscillators and their parameters for each spectrum, and then uses these parameters in a non-linear least squares optimization routine. The study compared spectral parameters such as Christiansen feature, reststrahlen bands (RBs), and the peaks centered around 860–1,100 (peak 1) and 400–480 cm -1 (peak 2) of n and k to their respective SiO 2 wt% of the glasses. CF, RBs, peak 1 of n and k, and peak 2 of n shift to higher wavenumbers with increased SiO 2 wt%, whereas peak 2 of k shifts to lower wavenumbers with increased SiO 2 wt%. Derived optical constants of these glasses will improve quantitative abundance mapping of volcanic materials on the surfaces of silicate targets in the Solar System.

58 GEOSCIENCES↗

DOE OSTI2020

SciPy 1.0: fundamental algorithms for scientific computing in Python

SciPy is an open-source scientific computing library for the Python programming language. Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages, over 100,000 dependent repositories and millions of downloads per year. In this work, we provide an overview of the capabilities and development practices of SciPy 1.0 and highlight some recent technical developments.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2026

An end-to-end workflow for executing a classically bootstrapped variational quantum algorithm on an academic quantum computer

Academic quantum computing platforms often face unique challenges in executing quantum workloads due to fragmented software environments and limited engineering support. Unlike commercial ecosystems, academic devices typically evolve without full-stack integration in mind, making it difficult to run complex applications—such as variational quantum algorithms (VQA)—reliably and efficiently. Issues such as incompatible software layers and lack of automated job management significantly increase the overhead of theory-experiment collaboration. To address these challenges, we develop a modular, end-to-end workflow that decouples application-layer code from low-level hardware control, automates circuit submission and result collection, and supports fine-grained circuit-level job scheduling and recovery. The architecture employs a dual-end application programming interface (API) design, enabling robust operation across unstable or resource-constrained hardware backends. For practical use, the framework is lightweight and user-friendly, allowing rapid prototyping of full-stack workflows using basic Python tools. We validate this workflow on a high-fidelity trapped-ion quantum computer by demonstrating a variational quantum eigensolver (VQE) experiment with a classically bootstrapped ansatz initialization technique. The system successfully executed over 60,000 circuits across multiple molecular test cases with minimal human intervention, highlighting the framework’s effectiveness in enabling reproducible, resilient quantum experimentation in academic settings.

Clifford↗

DOE OSTI2012

Static Analysis of the Lumped Mass Cable Model Using a Shooting Algorithm

This paper focuses on a method to solve the static configuration for a lumped mass cable system. The method demonstrated here is intended to be used prior to performing a dynamics simulation of the cable. Conventional static analysis approaches resort to dynamics relaxation methods or root-finding algorithms (such as the Newton-Raphson method) to find the equilibrium profile. The alternative method demonstrated here is general enough for most cable configurations (slack or taut) and ranges of cable elasticity. The forces acting on the cable are attributable to elasticity, weight, buoyancy, and hydrodynamics. For the three-dimensional problem, the initial cable profile is obtained by solving three equations, regardless of the cable discretization resolution. This analysis discusses regions and circumstances under which failures in the method are encountered.

16 TIDAL AND WAVE POWER↗

DOE OSTI2012

Multi channel thermal hydraulic analysis of gas cooled fast reactor using genetic algorithm

There are three analyzes to be done in the design process of nuclear reactor i.e. neutronic analysis, thermal hydraulic analysis and thermodynamic analysis. The focus in this article is the thermal hydraulic analysis, which has a very important role in terms of system efficiency and the selection of the optimal design. This analysis is performed in a type of Gas Cooled Fast Reactor (GFR) using cooling Helium (He). The heat from nuclear fission reactions in nuclear reactors will be distributed through the process of conduction in fuel elements. Furthermore, the heat is delivered through a process of heat convection in the fluid flow in cooling channel. Temperature changes that occur in the coolant channels cause a decrease in pressure at the top of the reactor core. The governing equations in each channel consist of mass balance, momentum balance, energy balance, mass conservation and ideal gas equation. The problem is reduced to finding flow rates in each channel such that the pressure drops at the top of the reactor core are all equal. The problem is solved numerically with the genetic algorithm method. Flow rates and temperature distribution in each channel are obtained here.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2012

Structural algorithm to reservoir reconstruction using passive seismic data (synthetic example)

Using of passive seismic observations to detect a reservoir is a new direction of prospecting and exploration of hydrocarbons. In order to identify thin reservoir model we applied the modification of Gaussian elimination method in conditions of incomplete synthetic data. Because of the singularity of a matrix conventional method does not work. Therefore structural algorithm has been developed by analyzing the given model as a complex model. Numerical results demonstrate of its advantage compared with usual way of solution. We conclude that the gas reservoir is reconstructed by retrieving of the image of encasing shale beneath it.

58 GEOSCIENCES↗

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