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At least 1,801 records · Page 100

Recurrent Neural Network Attention Mechanisms for Interpretable System Log Anomaly Detection

Deep learning has recently demonstrated state-of-the art performance on key tasks related to the maintenance of computer systems, such as intrusion detection, denial of service attack detection, hardware and software system failures, and malware detection. In these contexts, model interpretability is vital for administrator and analyst to trust and act on the automated analysis of machine learning models. Deep learning methods have been criticized as black box oracles which allow limited insight into decision factors. In this work we seek to "bridge the gap'' between the impressive performance of deep learning models and the need for interpretable model introspection. To this end we present recurrent neural network (RNN) language models augmented with attention for anomaly detection in system logs. Our methods are generally applicable to any computer system and logging source. By incorporating attention variants into our RNN language models we create opportunities for model introspection and analysis without sacrificing state-of-the art performance. We demonstrate model performance and illustrate model interpretability on an intrusion detection task using the Los Alamos National Laboratory (LANL) cyber security dataset, reporting upward of 0.99 area under the receiver operator characteristic curve despite being trained only on a single day's worth of data.

Anomaly detection, Attention, Recurrent Neural Net↗

xSDKTrilinos v. 1.0

The main purpose of the xSDKTrilinos package is to provide an interoperability layer that enables easy installation and combined usage of the IDEAS libraries, including PETSc, Hypre, and SuperLU. The package can be used for any project that uses or will use different libraries, such as Trilinos, PETSc, HYPRE and SuperLU, together. One particular example is AMANZI code from Los Alamos National Laboratories, that uses PETSc and Trilinos at the same time.

Heroux, MichaelA.↗

HPSim, Version 1.0

HPSim is a GPU-accelerated online multi-particle beam dynamics simulation tool for ion linacs. It was originally developed for use on the Los Alamos 800-MeV proton linac. It is a “z-code” that contains typical linac beam transport elements. The linac RF-gap transformation utilizes transit-time-factors to calculate the beam acceleration therein. The space-charge effects are computed using the 2D SCHEFF (Space CHarge EFFect) algorithm, which calculates the radial and longitudinal space charge forces for cylindrically symmetric beam distributions. Other space- charge routines to be incorporated include the 3D PICNIC and a 3D Poisson solver. HPSim can simulate beam dynamics in drift tube linacs (DTLs) and coupled cavity linacs (CCLs). Elliptical superconducting cavity (SC) structures will also be incorporated into the code. The computational core of the code is written in C++ and accelerated using the NVIDIA CUDA technology. Users access the core code, which is wrapped in Python/C APIs, via Pythons scripts that enable ease-of-use and automation of the simulations. The overall linac description including the EPICS PV machine control parameters is kept in an SQLite database that also contains calibration and conversion factors required to transform the machine set points into model values used in the simulation.

Pang, Xiaoying↗

ParSplice, Version 1

The ParSplice code implements the Parallel Trajectory Splicing algorithm described in [1]. This method is part of the Accelerated Molecular Dynamics family of techniques developed in Los Alamos National Laboratory over the last 16 years. These methods aim at generating high-quality trajectories of ensembles of atoms in materials. ParSplice uses multiple independent replicas of the system in order to parallelize the generation of such trajectories in the time domain, enabling simulations of systems of modest size over very long timescales. ParSplice includes capabilities to store configurations of the system, to generate and distribute tasks across a large number of processors, and to harvest the results of these tasks to generate long trajectories. ParSplice is a management layer that orchestrate large number of calculations, but it does not perform the actual molecular dynamics itself; this is done by external molecular dynamics engines. [1] Danny Perez, Ekin D Cubuk, Amos Waterland, Efthimios Kaxiras, Arthur F Voter, Long-time dynamics through parallel trajectory splicing, Journal of chemical theory and computation 12, 18 (2015)

Perez, Danny↗

Jali - Unstructured Mesh Infrastructure for Multi-Physics Applications

Jali is a parallel unstructured mesh infrastructure library designed for use by multi-physics simulations. It supports 2D and 3D arbitrary polyhedral meshes distributed over hundreds to thousands of nodes. Jali can read write Exodus II meshes along with fields and sets on the mesh and support for other formats is partially implemented or is (https://github.com/MeshToolkit/MSTK), an open source general purpose unstructured mesh infrastructure library from Los Alamos National Laboratory. While it has been made to work with other mesh frameworks such as MOAB and STKmesh in the past, support for maintaining the interface to these frameworks has been suspended for now. Jali supports distributed as well as on-node parallelism. Support of on-node parallelism is through direct use of the the mesh in multi-threaded constructs or through the use of "tiles" which are submeshes or sub-partitions of a partition destined for a compute node.

Garimella, RaoV↗

Python catemis package for DARHT Axis-II Dispenser-Cathode Emissivity and Temperature Analysis

The catemis python package includes the analysis methods used in paper "DARHT Axis-II Dispenser-Cathode Emissivity and Temperature", which was presented at the 2021 Weapons Engineering Symposium and Journal (WESJ) hosted by Los Alamos National Laboratory. The paper (LA-UR-21-25647) and presentation (LA-UR-21-28231) report on a temperature and emissivity model that has been developed and applied to data from diagnostics used to measure the surface temperature of the DARHT Axis-II hot dispenser cathode over more than a decade of operation. The catemis package provides all the methods used in reporting these results along with the data files used to create the plots and tables in the paper. This includes methods for loading and processing FAR spectral pyrometer data along with methods for temperature calibration of cathode images.

Koglin, Jason↗

components for the MuMMI software release

The Department of Energy and the National Cancer Institute have developed new software for conducting multi-scale simulations of complex systems. This software, called the Multiscale Machine-Learned Modeling Infrastructure (MuMMI), couples simulations on three spatial scales to study slow, large-scale reorganizations of biomolecular systems with the speed of continuum and coarse-grained models while revealing selected interactions at full atomic precision. In these simulations, coarse-to-fine model conversions are used to spawn relevant fine-scale simulations along chosen order parameters, and fine-to-coarse feedback is used to iteratively improve the accuracy and multi-scale consistency of coarse-scale and continuum simulations. The complete MuMMI framework will be reviewed and released as open-source software by Lawrence Livermore National Laboratory. This review covers a subset of the MuMMI components that were developed exclusively at the Los Alamos National Laboratory.

Neale, Christopher↗

Ume: Unstructured Mesh Explorations

Ume is an open-source collection of data structures for unstructured computational meshes and some simple algorithms that operate on them. These algorithms mimic the memory access patterns of a common class of operations found in several of the computational physics simulation codes developed at Los Alamos National Laboratory. The intent is that Ume can be used by hardware vendors to understand the memory traffic created by complex codes in a simplified environment, and to explore new means of optimization for that traffic. Ume is provided as a source-code C++ library and includes several applications that demonstrate the use of that library.

Henning, Paul↗

Phase Field Dislocation Dynamics (PFDD) version 2.x

This disclosure is for version 2.x of a mesoscale model called Phase Field Dislocation Dynamics (PFDD). PFDD is used for investigating deformation in nanoscale (grain sizes of ~300 nm and less) materials, such as metals and alloys. This approach models the motion and interaction of individual defects, namely dislocations, in the material using scalar-valued phase field variables, also called order parameters. The system is evolved through energy minimization thus the model calculates the total energy density in terms of the phase field variables. The energy minimization is completed using the Ginzburg-Landau equation, and is implemented with explicit time integration. The total system energy can be comprised of several terms, including the strain energy (which describes dislocation-dislocation interactions), the energy due to an applied stress (dislocation interactions with the applied stress), and a core/lattice (perfect dislocations) or generalized stacking fault (partial dislocations) energy (described the dislocation core structure). The latter term in particular may vary based on the crystal structure being modeled and is typically informed using lower length scale (e.g., atomistic) approaches, although no such (atomistic) calculations are completed within the PFDD algorithm. This basic formulation was previously reviewed by Los Alamos National Laboratory and released under license number C17113. This previously reviewed version we will henceforth refer to as PFDD v1.0. PFDD v1.0 consisted of 2 codes (one parallel and one serial) plus input files, all written in the C language. This new disclosure is addressing the next versions of the PFDD, versions 2.x. There have been several enhancements of PFDD v1.0, which are described here and included in the attached code, which we will refer to as PFDD v2.0. There are also several new features described here that are either planned or already in process and are expected to be subsequent releases, i.e., v2.1, v2.2, ...v2.x.

Hunter, Abigail↗

Montepy

Montepy is an object-oriented Python interface for MCNP input files. It excels at reading, editing, creating, and writing MCNP input files. The Monte Carlo N Particle (MCNP) code is a Monte Carlo transport solver for simulating many different types of radiation problems and is developed by Los Alamos National Laboratory. Montepy creates an object-oriented interface for the MCNP input file to allow for efficient automated modifications to large, complex simulations.

Gale, Micah [Idaho National Laboratory (INL), Idah↗

SOURCES4D

SOURCES is a code for computing neutron source rates and spectra from spontaneous fission (including delayed neutrons) and (alpha,n) reactions in homogeneous materials and (alpha,n) reactions in single-interface and two-interface geometries. SOURCES is a Los Alamos National Laboratory (LANL) code that is written in FORTRAN and distributed through the Radiation Safety Information Computation Center (RSICC). LANL’s last release of SOURCES to RSICC was SOURCES4C in 2002. This disclosure covers the latest version of SOURCES, SOURCES4D. This version adds sensitivity capabilities for (alpha,n) sources in homogeneous materials. Specifically, SOURCES4D writes new output that can be used to calculate, in post-processing, first and second derivatives of the (alpha,n) source rate density and spectrum with respect to nuclide densities in a homogeneous material and first derivatives of the (alpha,n) source rate density and spectrum with respect to nuclide stopping powers and (alpha,n) cross sections (nuclear data). These derivatives are useful for uncertainty quantification, predictive modeling, and other applications in neutron transport problems.

Favorite, Jeffrey A.↗

AI for Earthquake Physics

The core LANL program sponsored by Office of Science, Basic Energy Science, Chemical Sciences, Geosciences, and Biosciences (DOE-BES-CSGB) and led by PI Johnson aims to research earthquake faults to advance fault physics and earthquake hazards. All work completed is required to be made publicly available through publications and open-source codes supporting the published results. All routines are/will-be written in open source python and applied to publicly available data sets. These routines will format data from input into models, develop and test modeling frameworks for the problems addressed, and produce figures applicable to peer-reviewed manuscripts. All work is reviewed for Los Alamos Unlimited Release before submitting to a journal. This summary encompasses recently completed work and work to be complete for the duration of the program.

Johnson, Christopher↗

Improved parallel performance of the CICE model in CESM1

The Los Alamos sea ice model, CICE, is a sophisticated finite difference grid point model. It has been a part of the National Science Foundation and Department of Energy community climate models (Community Climate System Model (CCSM) and Community Earth System Model (CESM)) for over a decade. It includes various physical and dynamical processes and is parallelized to run on large-scale computer systems. The CICE model was assessed in the CESM at different resolutions and target processor counts to better understand and optimize the performance. Several new decompositions and a new feature to reduce the halo cost were added to the model. The new decompositions better leverage land block elimination and take advantage of scaling opportunities in different computational kernels. As a result of these new features, the CICE model performance has been improved by up to 45% and has more flexibility to be run efficiently at arbitrary Message Passing Interface (MPI) task counts

54 ENVIRONMENTAL SCIENCES↗

On the vulnerability of data-driven structural health monitoring models to adversarial attack

Many approaches at the forefront of structural health monitoring rely on cutting-edge techniques from the field of machine learning. Recently, much interest has been directed towards the study of so-called adversarial examples; deliberate input perturbations that deceive machine learning models while remaining semantically identical. This article demonstrates that data-driven approaches to structural health monitoring are vulnerable to attacks of this kind. In the perfect information or ‘white-box’ scenario, a transformation is found that maps every example in the Los Alamos National Laboratory three-storey structure dataset to an adversarial example. Also presented is an adversarial threat model specific to structural health monitoring. The threat model is proposed with a view to motivate discussion into ways in which structural health monitoring approaches might be made more robust to the threat of adversarial attack.

60 APPLIED LIFE SCIENCES↗

Preexisting compensatory amino acids compromise fitness costs of a HIV-1 T cell escape mutation

Background: Fitness costs and slower disease progression are associated with a cytolytic T lymphocyte (CTL) escape mutation T242N in Gag in HIV-1-infected individuals carrying HLA-B*57/5801 alleles. However, the impact of different context in diverse HIV-1 strains on the fitness costs due to the T242N mutation has not been well characterized. To better understand the extent of fitness costs of the T242N mutation and the repair of fitness loss through compensatory amino acids, we investigated its fitness impact in different transmitted/founder (T/F) viruses. Results: The T242N mutation resulted in various levels of fitness loss in four different T/F viruses. However, the fitness costs were significantly compromised by preexisting compensatory amino acids in (Isoleucine at position 247) or outside (glutamine at position 219) the CTL epitope. Moreover, the transmitted T242N escape mutant in subject CH131 was as fit as the revertant N242T mutant and the elimination of the compensatory amino acid I247 in the T/F viral genome resulted in significant fitness cost, suggesting the fitness loss caused by the T242N mutation had been fully repaired in the donor at transmission. Analysis of the global circulating HIV-1 sequences in the Los Alamos HIV Sequence Database showed a high prevalence of compensatory amino acids for the T242N mutation and other T cell escape mutations. Conclusions: Our results show that the preexisting compensatory amino acids in the majority of circulating HIV-1 strains could significantly compromise the fitness loss due to CTL escape mutations and thus increase challenges for T cell based vaccines.

59 BASIC BIOLOGICAL SCIENCES↗

Process Development and Micro-Machining of MARBLE Foam-Cored Rexolite Hemi-Shell Ablator Capsules

For this study, machined CH hemi-shell ablator capsules have been successfully produced by the MST-7 Target Fabrication Team at Los Alamos National Laboratory. Process development and micro-machining techniques have been developed to produce capsules for both the Omega and National Ignition Facility (NIF) campaigns. These capsules are gas filled up to 10 atm and consist of a machined plastic hemi-shell outer layer that accommodates various specially engineered low-density polystyrene foam cores. Machining and assembly of the two-part, step-jointed plastic hemi-shell outer layer required development of new techniques, processes, and tooling while still meeting very aggressive shot schedules for both campaigns. Finally, problems encountered and process improvements will be discussed that describe this very unique, complex capsule design approach through the first Omega proof-of-concept version to the larger NIF version.

42 ENGINEERING↗

Development of hierarchical, tunable pore size polymer foams for ICF targets

In this study, one of the great challenges of inertial confinement fusion experiments is poor understanding of the effects of reactant heterogeneity on fusion reactions. The Marble campaign, conceived at Los Alamos National Laboratory, aims to gather new insights into this issue by utilizing target capsules containing polymer foams of variable pore sizes, tunable over an order of magnitude. Here, we describe recent and ongoing progress in the development of CH and CH/CD polymer foams in support of Marble. Hierarchical and tunable pore sizes have been achieved by utilizing a sacrificial porogen template within an open-celled poly(divinylbenzene) or poly(divinylbenzene-co-styrene) aerogel matrix, resulting in low-density foams (~30 mg/ml) with continuous multimodal pore networks.

36 MATERIALS SCIENCE↗

Reactor Physics Measurements and Benchmark Specifications for Oak Ridge Highly Enriched Uranium Sphere (ORSphere)

In the early 1970s Dr. John T. Mihalczo (team leader), J.J. Lynn, and J.R. Taylor performed experiments at the Oak Ridge Critical Experiments Facility (ORCEF) with highly enriched uranium (HEU) metal (called Oak Ridge Alloy or ORALLOY) in an effort to recreate GODIVA I results with greater accuracy than those performed at Los Alamos National Laboratory in the 1950s. The purpose of the Oak Ridge ORALLOY Sphere (ORSphere) experiments was to estimate the unreflected and unmoderated critical mass of an idealized sphere of uranium metal corrected to a density, purity, and enrichment such that it could be compared with the GODIVA I experiments. Additionally, various material reactivity worths, the surface material worth coefficient, the delayed neutron fraction, the prompt neutron decay constant, relative fission density, and relative neutron importance were all measured. The critical assembly, material reactivity worths, the surface material worth coefficient, and the delayed neutron fraction were all evaluated as benchmark experiment measurements. The reactor physics measurements are the focus of this paper; although for clarity the critical assembly benchmark specifications are briefly discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

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