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At least 181 records · Page 10
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

One Electron Multiple Proton Transfer in Model Organic Donor–Acceptor Systems: Implications for High-Frequency EPR

EPR spectroscopy is an important spectroscopic method for identification and characterization of radical species involved in many biological reactions. The tyrosyl radical is one of the most studied amino acid radical intermediates in biology. Often in conjunction with histidine residues, it is involved in many fundamental biological electron and proton transfer processes, such as in the water oxidation in photosystem II. As biological processes are typically extremely complicated and hard to control, molecular bio-mimetic model complexes are often used to clarify the mechanisms of the biological reactions. In this work, we present theoretical calculations to investigate the sensitivity of magnetic resonance parameters to proton-coupled electron transfer events, as well as conformational substates of the molecular constructs which mimic the tyrosine-histidine (Tyr-His) pairs found in a large variety of proteins. Upon oxidation of the phenol, the Tyr analog, these complexes can perform not only one-electron one-proton transfer (EPT), but also one-electron two-proton transfers (E2PT). It is shown that in aprotic environment the g X -components of the electronicg-tensor are extremely sensitive to the first proton transfer from the phenoxyl oxygen to the imidazole nitrogen (EPT product), leading to a significant increase of the g X -value of up to 0.003, but are not sensitive to the second proton transfer (E2PT). In the latter case, the change of the g X -value is much smaller (ca. 0.0001), which is too small to be distinguished even by high-frequency EPR. The 14 N hyperfine values are also too similar to allow differentiation between the different protonation states in EPT and E2PT. The magnetic resonance parameters were also calculated as a function of the rotation angles around single bonds. It was demonstrated that rotation of the phenoxyl group results in large positive changes (> 0.001) in the g X -values. Analysis of the data reveals that the main source of these changes is related to the strength of the H-bond between phenoxyl oxygen and the proton(s) on N 1 and N 2 positions of the imidazole.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Automatically generated model for light alkene combustion

Light alkenes are common combustion intermediates for a variety of fuels. Therefore, understanding their oxidation and pyrolysis chemistry is key to building detailed mechanisms for heavier fuels. This work was focused on the development and evaluation of a detailed kinetic mechanism suitable for the combustion of light alkenes up to C 4 without the use of tuned parameters, instead, the parameter values come from first principles or direct measurements. The generated mechanism accurately estimates the laminar burning velocity (S u ) and ignition delay time (IDT) of light alkenes available in the literature, which represent fundamental combustion properties at a wide range of conditions. Because each parameter is thought to have a physically realistic value, not tuned to these measurements, the new model could be used as a sub-mechanism in models for other applications. The reaction network was generated with the open-source Reaction Mechanism Generator (RMG) software. Sensitivity analyses were performed under wide ranges of temperatures and pressures, allowing for the identification of the most impactful species and reactions. Based on these, a comprehensive thermochemistry database, including calculations on 550 molecules performed in this work at the CBS-QB3 level of theory, and a kinetic library, including theoretically-derived reaction rates retrieved from the literature, were built and used in the mechanism generation. The developed mechanism was compared against several existing detailed kinetic mechanisms for ethene, propene, 1-butene, 2-butene, and isobutene. Here, the newly generated model is the most accurate among the ones analyzed, in terms of fractional bias and normalized mean square error. Hence, this new model was used to analyze the chemistry of alkene combustion. Key rate coefficients were compared, to identify the cause of deviations between the models and possible areas for further improvements.

09 BIOMASS FUELS↗
DOE OSTI2022

Gamma-Ray-Induced Formation of Uranyl Peroxide Cage Clusters

Aqueous solutions of lithium uranyl triperoxide, Li 4 [UO 2 (O 2 ) 3 ] (LiUT), were irradiated with gamma rays at room temperature and found to form the uranyl peroxide cage cluster, Li 24 [(UO 2 )(O 2 )(OH)] 24 (Li–U 24 ). Raman spectroscopy and 18 O labeling were used to identify the Raman-active vibrations of LiUT. With these assignments, the concentration of LiUT was tracked as a function of radiation dose. A discrepancy between monomer removal and cluster formation suggests that the reaction proceeds by the assembly of an intermediate. Non-negative matrix factorization was used to separate Raman spectra into components and resulted in the identification of a unique intermediate species. Much of the conversion appears to be driven by water radiolysis products, particularly the hydroxyl radical. Furthermore, this differs from the 18 O-labeled copper-catalyzed formation of U 24 , which progresses at a steady rate with no observation of intermediates. Li–U 24 in solution decomposes at high radiation doses resulting in a solid insoluble product similar to Na-compreignacite, Na 2 (UO 2 ) 6 O 4 (OH) 6 ·7H 2 O, which contains uranyl oxyhydroxy sheets.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Amazonian fog harbors viable microbes

Fog formation over tropical forests remains poorly characterized, despite its potential role in bioaerosol dispersion and ecosystem processes. Here, we analyzed fog samples collected at the Amazon Tall Tower Observatory using flow cytometry and culture-based techniques to characterize viable microbial communities. Microbial cell concentrations varied over an order of magnitude across 13 fog events, reaching up to 8 × 104 cells per ml of fog water. Flow cytometry consistently detected metabolically active cells, while culturing and mass spectrometry-based identification yielded eight viable bacterial species and seven fungal taxa. The bacteria Serratia marcescens, Ralstonia pickettii and Sphingomonas paucimobilis exhibited seasonal variations in prevalence. The fungal species identified were primarily mesophilic saprophytes and endophytes, commonly associated with soil and plant surfaces. Our findings indicate that fog harbors viable microbes, including Serratia marcescens and Ralstonia pickettii, which may imply a relevance of fog for microbial dispersal, colonization and nutrient cycling in the Amazon rainforest.

Godoi, Ricardo H. (ORCID:0000000247744870)↗
DOE OSTI2024

Reevaluation of XPS Pt 4f peak fitting: Ti 3s plasmon peak interference and Pt metallic peak asymmetry in Pt@TiO2 system

The structural, electronic, and electrochemical properties of noble metals supported on transition metal oxides, such as Pt nanoparticles (NPs) supported on TiO2 (Pt@TiO2), have been extensively studied for their relevance to energy technologies, including photocatalysis, electrocatalysis, and electrochemical energy conversion. As the need to lower the amount of Pt and other noble metals used in energy conversion systems becomes urgent, it is essential to accurately quantify the loading of these metals and electronic density redistribution between them and their supports. X-ray photoelectron spectroscopy (XPS) is widely used for the identification and quantification of chemical species. In particular, fitting of the Pt 4f spectra for Pt@TiO2 is frequently performed to determine the chemical environment and oxidation state of Pt, which strongly affect the physical behavior and catalytic performance of this system. Here, we show that neglecting contributions due to the Pt surroundings and the asymmetry of the Pt metal peak in the line shape fitting can lead to severe mischaracterization of the oxidation state of Pt. We quantify the effects of background contributions that stem from the TiO2 support and discuss how factoring in the strong asymmetry of Pt 4f doublets, which stems from the shake-up type processes, affects the interpretation of Pt 4f XPS line shape.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
NASA NTRS1974

Evaluation and comparison of ERTS measurements of major crops and soil associations for selected test sites in the central United States

The author has identified the following significant results. Multispectral scanner data obtained by ERTS-1 over six test sites in the Central United States were analyzed and interpreted. ERTS-1 data for some of the test sites were geometrically corrected and temporally overlayed. Computer-implemented pattern recognition techniques were used in the analysis of all multispectral data. These techniques were used to evaluate ERTS-1 data as a tool for soil survey. Geology maps and land use inventories were prepared by digital analysis of multispectral data. Identification and mapping of crop species and rangelands were achieved throught the analysis of 1972 and 1973 ERTS-1 data. Multiple dates of ERTS-1 data were examined to determine the variation with time of the areal extent of surface water resources on the Southern Great Plain.

Baumgardner, M. F.↗
NASA NTRS1974

Simulation of lunar carbon chemistry. II - Lunar winds contribution

Simulation experiments, computations, and analysis of glassy agglutinates show that a directly condensed lunar wind vapor phase is strongly depleted in carbon and sulfur compounds and may recrystallize rapidly in the lunar thermal cycle and separate from host crystals. Factors preventing identification of low-energy species implanted from the lunar atmosphere are discussed. Computational results indicate that the implanted lunar winds carbon originates both from the vapor phases injected into the lunar atmosphere during thermal metamorphism of mature lunar soil grains and from direct volatization of impacting micrometeorites. It is suggested that microglass splashes and tiny crystalline grains possibly attached to the surface of coarser grains do not affect the characteristics of solar wind carbon chemistry in the lunar soil.

Bibring, J. P.↗
NASA NTRS1982

Measurements by the plasma diagnostics package on STS-3

A comprehensive set of measurements about the orbiter environment are provided by the plasma diagnostics package (PDP). Ion and electron particle densities, energies, and spatial distribution functions; ion mass for identification of particular molecular ion species; and magnetic fields, electric fields and electromagnetic waves over a broad frequency range are studied. Shuttle environmental measurements will be made both on the pallet and, by use of the remote manipulator system (RMS), the PDP will be maneuvered in and external to the bay area to continue environmental measurements and to carry on a joint plasma experiment with the Utah State University fast-pulsed electron generator. Results of orbiter environment EMI measurements and S-band field strengths as well as preliminary results from wake search operations indicating wake boundary identifiers are reported.

Shawhan, S. D.↗
NASA NTRS1994

Sulfur dioxide in the atmosphere of Venus 1 sounding rocket observations

In this paper we present ultraviolet reflectance spectra obtained during two sounding rocket observations of Venus made during September 1988 and March 1991. We describe the sensitivity of the derived reflectance to instrument calibration and show that significant artifacts can appear in that spectrum as a result of using separate instruments to observe both the planetary radiance and the solar irradiance. We show that sulfur dioxide is the primary spectral absorber in the 190 - 230 nm region and that the range of altitudes probed by these wavelengths is very sensitive to incidence and emission angles. In a following paper Na et. al. (1994) show that sulfur monoxide features are also present in these data. Accurate identification and measurement of additional species require observations in which both the planetary radiance and the solar irradiance are measured with the same instrument. The instrument used for these observations is uniquely suited for obtaining large phase angle coverage and for studying transient atmospheric events on Venus because it can observe targets within 18 deg of the sun while earth orbiting instruments are restricted to solar elongation angles greater than or equal to 45 deg.

Mcclintock, William E.↗
NASA NTRS1993

SiS2 in circumstellar shells

Solid state SiS2 is proposed as the material responsible for the recently discovered 21 micrometer emission feature that is observed in the carbon-rich circumstellar shells of certain protoplanetary nebulae. Sulfurized SiC, or SiS2 mantles on grains of either SiC or a:C-H are discussed as possible forms for which no spectroscopic laboratory observations yet exist. The identification with a relatively minor species and required special abundance ratios are consistent with the low incidence rate that the 21 micrometer feature presents in the population of carbon rich objects. It is also consistent with the lack of a good correlation between the 21 micrometer feature and the other solid-state spectroscopic features that have been observed in protoplanetaries that would be expected if the feature arose from molecules composed of H, C, N, and O. SiS2 condensate is consistent with the circumstellar shell temperature range, T(sub CS) approximately equal to or less than 150 K, at which the feature appears, and the available mass of SiS2, M(sub SiS2) approx. = 5 x 10(exp -6) solar mass, that is possible in the circumstellar shell.

Goebel, J. H.↗
NASA NTRS1994

Sulfur dioxide in the atmosphere of Venus. 1: Sounding rocket observations

In this paper we present ultraviolet reflectance spectra obtained during two sounding rocket observations of Venus made during September 1988 and March 1991. We describe the sensitivity of the derived reflectance to instrument calibration and show that significant artifacts can appear in the spectrum as a result of using separate instruments to observe both the planetary radiance and the solar irradiance. We show that sulfur dioxide is the primary special absorber in the 190-230 nm region and that the range of altitudes probed by these wavelengths is very sensitive to incidence and emission angles. In a following paper Na et al. (1994) show that sulfur monixide features are also present intese data. Accurate identification and measurement of additional species require observations in which both the planetary radiance and the solar irradiance are measured with the same instrument. The instrument used for these observations is uniquely suited for obtaining large phase angle coverage and for studying transient atmospheric events on Venus because it can observe targents within 18 deg of the Sun while Earth-orbiting instruments are restricted to solar elongation angles greater than or equal to 45 deg.

Mcclintock, William E.↗
NASA NTRS1997

OPAD-EDIFIS Real-Time Processing

The Optical Plume Anomaly Detection (OPAD) detects engine hardware degradation of flight vehicles through identification and quantification of elemental species found in the plume by analyzing the plume emission spectra in a real-time mode. Real-time performance of OPAD relies on extensive software which must report metal amounts in the plume faster than once every 0.5 sec. OPAD software previously written by NASA scientists performed most necessary functions at speeds which were far below what is needed for real-time operation. The research presented in this report improved the execution speed of the software by optimizing the code without changing the algorithms and converting it into a parallelized form which is executed in a shared-memory multiprocessor system. The resulting code was subjected to extensive timing analysis. The report also provides suggestions for further performance improvement by (1) identifying areas of algorithm optimization, (2) recommending commercially available multiprocessor architectures and operating systems to support real-time execution and (3) presenting an initial study of fault-tolerance requirements.

Katsinis, Constantine↗
NASA NTRS1999

Collaborative Study of Analysis of High Resolution Infrared Atmospheric Spectra Between NASA Langley Research Center and the University of Denver

The Langley-D.U. collaboration on the analysis of high resolution infrared atmospheric spectra covered a number of important studies of trace gases identification and quantification from field spectra, and spectral line parameters analysis. The collaborative work included: Quantification and monitoring of trace gases from ground-based spectra available from various locations and seasons and from balloon flights. Studies toward identification and quantification of isotopic species, mostly oxygen and Sulfur isotopes. Search for new species on the available spectra. Update of spectroscopic line parameters, by combining laboratory and atmospheric spectra with theoretical spectroscopy methods. Study of trends of atmosphere trace constituents. Algorithms developments, retrievals intercomparisons and automatization of the analysis of NDSC spectra, for both column amounts and vertical profiles.

Goldman, Aaron↗
NASA NTRS2010

Reduced Martian Carbon: Evidence from Martian Meteorites

Identification of indigenous reduced carbon species on Mars has been a challenge since the first hypotheses about life on Mars were proposed. Ranging from the early astronomical measurements to analyses of samples from the Martian surface in the form of Martian meteorites. The first direct attempt to analyze the carbon species on the surface was in 1976 with the Viking GC-MS in-situ experiment which gave inconclusive results at two sites on Mars [1]. With the recognition in 1983 that samples of the Martian surface were already present on Earth in the form of Martian meteorites by Bogard and Johnson [2] new opportunities became available for direct study of Mars's samples in te rlraesbtrioalratories. Carbon isotopic compositional information suggested a reduced carbon component was present in the Martian meteorites [3-5]. Polycyclic aromatic hydrocarbons associated with carbonate globules in ALH84001 were later identified [6,7]. Jull et al [8] noted that an insoluble component was present within Nakhla and more than 75% of its C lacked any 14C, which is modern-day carbon contaminant. This carbon fraction was believed to be either indigenous (i..e. Martian) or ancient meteoritic carbon phase. Within the fractures of Nakhla and ALH84001, Fisk et al [9,10] identified reduced carbon-enriched areas. Gibson et al. [11] using a combination of NanoSIMS, Focused Electron microscopy, Laser Raman Spectroscopy and Stepped-Combustion Static Mass Spectrometry analyses the presence of possible indigenous reduced carbon components within the 1.3 Ga old Nakhla.

Gibson, Everett K.↗
NASA NTRSDate not supplied

TPSAS-NF1676L-19067-DND

We discuss methods to separate absorbing carbonaceous aerosols and dust in the AERONET database, including using the imaginary refractive index and the absorbing Angstrom exponent (AAE). Carbonaceous aerosols can be separated from dust in imaginary refractive index space because 95% of biomass burning aerosols have imaginary indices greater than 0.0042 at the 675--1020 nm wavelengths, and 95% of dust has imaginary refractive indices of less than 0.0042 at the 675--1020 nm wavelengths. Alternatively, about 25% of the AAE histogram for "pure dust" overlaps with 75% of the biomass burning AAE histogram, and unique identification of carbonaceous and dust species through AAE analysis is not possible for data in the overlap region.

Greg Schuster↗
DOE OSTI2021

Small Mammal Trapping Survey for the Lawrence Livermore National Laboratory Site 300 and Corral Hollow Ecological Reserve

ECORP Consulting, Inc. conducted a nocturnal small mammal trapping survey within Lawrence Livermore National Laboratory’s (LLNL) Site 300 and the adjacent California Department of Fish and Wildlife (CDFW) Corral Hollow Ecological Reserve. Both sites are located east of the City of Livermore and southwest of the City of Tracy, Alameda and San Joaquin Counties, California (Figure 1-1). A small mammal trapping survey of the project site was conducted in 2002 in preparation for the 2005 LLNL Site-Wide Environmental Impact Statement (SWEIS; Jones & Stokes 2003). The San Joaquin pocket mouse (Perognathus inornatus) was the only special-status species (federal species of concern) captured on Site 300 during the study (West and Woollett 2003). However, since then P. inornatus was taxonomically split into separate subspecies and the pocket mouse species identified on Site 300 in 2002 is no longer considered a special-status species. The 2002 survey also captured woodrats, but identification of the subspecies was not possible. Further investigation was necessary to determine if the woodrat species on the project site was the federally listed (endangered) riparian (San Joaquin Valley) woodrat (Neotoma macrotis riparia [Formerly described as Neotoma fuscipes riparia]), the common Diablo Range woodrat (N. f. perplexa), or another form.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

The Advantages of Combining Morphological and Molecular Methods to Characterise Zooplankton Communities: A Case Study of the UNESCO Biosphere Reserve of the Berlengas Archipelago, Portugal

Understanding the ecological dynamics of zooplankton communities is crucial to precisely assessing the health of marine ecosystems and their management. Metabarcoding has contributed to a better understanding of biodiversity in marine environments. However, this methodology still requires protocol optimisation. Here, we used a complementary approach combining molecular and morphological identification methods to identify the zooplankton community inhabiting the Berlengas Archipelago, Portugal. The presence of non-indigenous species was also assessed. The results showed that the metabarcoding approach outperformed the classical morphological identification method, detecting more species with higher resolution. Nevertheless, the classical method was able to identify species that were not detected by the molecular approaches, probably due to a lack of reference data in the databases. The comparison between different molecular approaches showed that COI and bulk DNA gave better results than 18S rRNA and eDNA by detecting higher species diversity. However, complementarities were observed between them. Molecular tools also proved effective in identifying several potential non-indigenous species, identifying, for the first time, several potentially unreported NIS inhabiting the Portuguese marine ecosystems. Overall, our results confirmed the importance of combining both classical and molecular methods to obtain a more refined assessment of the zooplanktonic communities in marine environments.

Simões, Marco (ORCID:0000000179957304)↗