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At least 181 records · Page 10

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DOE OSTI2025

Mucilage produced by aerial roots hosts diazotrophs that provide nitrogen in Sorghum bicolor

Sorghum ( Sorghum bicolor ) is an important food, feed, and fodder crop worldwide and is gaining popularity as an energy crop due to its high potential for biomass production. Some sorghum accessions develop many aerial roots and produce an abundant carbohydrate-rich mucilage after rain. This aerial root mucilage is similar to that observed in landraces of maize ( Zea mays ) from southern Mexico, which have been previously shown to host diazotrophs. In this study, we characterized the aerial root development of several sorghum accessions and the impact of humidity on this trait. We conducted a microbiome study of the aerial root mucilage of maize and sorghum and isolated numerous diazotrophs from field sorghum mucilage. We observed that the prevailing phyla in the mucilage were Pseudomonadota, Bacteroidota, and Bacillota. However, bacterial abundances varied based on the genotype and the location. Using acetylene reduction, 15 N 2 gas feeding, and 15 N isotope dilution assays, we confirmed that these sorghum accessions can acquire about 40% of their nitrogen from the atmosphere through these associations on aerial roots. Nitrogen fixation in sorghum aerial root mucilage offers a promising avenue to reduce reliance on synthetic fertilizers and promote sustainable agricultural practices for food, feed, fodder, and bioenergy production.

Venado, Rafael E.↗

NASA NTRS2021

The benefit of brightness temperature assimilation for the SMAP Level-4 surface and root-zone soil moisture analysis

The Soil Moisture Active Passive (SMAP) Level-4 (L4) product provides global estimates of surface soil moisture (SSM) and root-zone soil moisture (RZSM) via the assimilation of SMAP brightness temperature (Tb) observations into the NASA Catchment Land Surface Model (CLSM). Here, using in situ measurements from 2474 sites in China, we evaluate the performance of soil moisture estimates from the L4 data assimilation (DA) system and from a baseline “open-loop” (OL) simulation of CLSM without Tb assimilation. Using random forest regression, the efficiency of the L4 DA system (i.e., the performance improvement in DA relative to OL) is attributed to eight control factors related to the CLSM as well as τ–ω radiative transfer model (RTM) components of the L4 system. Results show that the Spearman rank correlation (R) for L4 SSM with in situ measurements increases for 77 % of the in situ measurement locations (relative to that of OL), with an average R increase of approximately 14 % (ΔR=0.056). RZSM skill is improved for about 74 % of the in situ measurement locations, but the average R increase for RZSM is only 7 % (ΔR=0.034). Results further show that the SSM DA skill improvement is most strongly related to the difference between the RTM-simulated Tb and the SMAP Tb observation, followed by the error in precipitation forcing data and estimated microwave soil roughness parameter h. For the RZSM DA skill improvement, these three dominant control factors remain the same, although the importance of soil roughness exceeds that of the Tb simulation error, as the soil roughness strongly affects the ingestion of DA increments and further propagation to the subsurface. For the skill of the L4 and OL estimates themselves, the top two control factors are the precipitation error and the SSM–RZSM coupling strength error, both of which are related to the CLSM component of the L4 system. Finally, we find that the L4 system can effectively filter out errors in precipitation. Therefore, future development of the L4 system should focus on improving the characterization of the SSM–RZSM coupling strength.

Jianxiu Qiu↗

DOE OSTI2024

Engineered poplar for bioproduction of the triterpene squalene

Building sustainable platforms to produce biofuels and specialty chemicals has become an increasingly important strategy to supplement and replace fossil fuels and petrochemical-derived products. Terpenoids are the most diverse class of natural products that have many commercial roles as specialty chemicals. Poplar is a fast growing, biomassdense bioenergy crop with many species known to produce large amounts of the hemiterpene isoprene, suggesting an inherent capacity to produce significant quantities of other terpenes. Here we aimed to engineer poplar with optimized pathways to produce squalene, a triterpene commonly used in cosmetic oils, a potential biofuel candidate, and the precursor to the further diversified classes of triterpenoids and sterols. The squalene production pathways were either re-targeted from the cytosol to plastids or co-produced with lipid droplets in the cytosol. Squalene and lipid droplet co-production appeared to be toxic, which we hypothesize to be due to disruption of adventitious root formation, suggesting a need for tissue specific production. Plastidial squalene production enabled up to 0.63 mg/g fresh weight in leaf tissue, which also resulted in reductions in isoprene emission and photosynthesis. These results were also studied through a technoeconomic analysis, providing further insight into developing poplar as a production host.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Engineered poplar for bioproduction of the triterpene squalene

Here we aimed to engineer poplar with optimized pathways to produce squalene, a triterpene commonly used in cosmetic oils, a potential biofuel candidate, and the precursor to the further diversified classes of triterpenoids and sterols. The squalene production pathways were either re-targeted from the cytosol to plastids or co-produced with lipid droplets in the cytosol. Squalene and lipid droplet co-production appeared to be toxic, which we hypothesize to be due to disruption of adventitious root formation, suggesting a need for tissue specific production. Plastidial squalene production enabled up to 0.63 mg/g fresh weight in leaf tissue, which also resulted in reductions in isoprene emission and photosynthesis. These results were also studied through a technoeconomic analysis, providing further insight into developing poplar as a production host

isoprene emission↗

DOE OSTI2025

Tundra Vegetation Community Type, Not Microclimate, Controls Asynchrony of Above‐ and Below‐Ground Phenology

The below-ground growing season often extends beyond the above-ground growing season in tundra ecosystems and as the climate warms, shifts in growing seasons are expected. However, we do not yet know to what extent, when and where asynchrony in above- and below-ground phenology occurs and whether variation is driven by local vegetation communities or spatial variation in microclimate. Here, we combined above- and below-ground plant phenology metrics to compare the relative timings and magnitudes of leaf and fine-root growth and senescence across microclimates and plant communities at five sites across the Arctic and alpine tundra biome. We observed asynchronous growth between above- and below-ground plant tissue, with the below-ground season extending up to 74% (~56 days) beyond the onset of above-ground leaf senescence. Plant community type, rather than microclimate, was a key factor controlling the timing, productivity, and growth rates of fine roots, with graminoid roots exhibiting a distinct ‘pulse’ of growth later into the growing season than shrub roots. Our findings indicate the potential of vegetation change to influence below-ground carbon storage as the climate warms and roots remain active in unfrozen soils for longer. Taken together, our findings of increased root growth in soils that remain thawed later into the growing season, in combination with ongoing tundra vegetation change including increased shrub and graminoid abundance, indicate increased below-ground productivity and altered carbon cycling in the tundra biome.

below-ground↗

DOE OSTI2021

Identification of a diguanylate cyclase expressed in the presence of plants and its application for discovering candidate gene products involved in plant colonization by Pantoea sp. YR343

Microbial colonization of plant roots is a highly complex process that requires the coordination and regulation of many gene networks, yet the identities and functions of many of these gene products have yet to be discovered. Pantoea sp. YR343, a gamma-proteobacterium isolated from the rhizosphere of Populus deltoides , forms robust biofilms along the root surfaces of Populus and possesses plant growth-promoting characteristics. In this work, we identified three diguanylate cyclases in the plant-associated microbe Pantoea sp. YR343 that are expressed in the presence of plant roots. One of these diguanylate cyclases, DGC2884, localizes to discrete sites in the cells and its overexpression results in reduced motility and increased EPS production and biofilm formation. We performed a genetic screen by expressing this diguanylate cyclase from an inducible promoter in order to identify candidate gene products that may be involved in root colonization by Pantoea sp. YR343. Further, we demonstrate the importance of other domains in DGC2884 to its activity, which in combination with the genes identified by transposon mutagenesis, may yield insights into the mechanisms of plant association as well as the activity and regulation of homologous enzymes in medically and agriculturally relevant microbes.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1988

Hormonal regulation of wheat growth during hydroponic culture

Hormonal control of root growth has been explored as one means to alleviate the crowding of plant root systems experienced in prototype hydroponic biomass production chambers being developed by the CELSS Breadboard Project. Four plant hormones, or their chemical analogs, which have been reported to selectively inhibit root growth, were tested by adding them to the nutrient solutions on day 10 of a 25 day growth test using spring wheat in hydroponic cultures. Growth and morphological changes is both shoot and root systems were evaluated. In no case was it possible to inhibit root growth without a comparable inhibition of shoot growth. It was concluded that this approach is unlikely to prove useful for wheat.

Wetherell, Donald↗

NASA NTRS2011

Growth of Three Lettuce Cultivars in NASA's HDU PEM During the 2010 DRATS Test

NASA's 2010 Desert Research and Technology Studies (DRATS) of the VEGGIE Food Production System in the Habitat Demonstration Unit (HDU) Pressurized Excursion Module (PEM) was the first operational evaluation of salad crop production technology in a NASA analog test. Rooting media and slow release fertilizers were evaluated for three lettuce cultivars that had shown promise as candidates for a surface based food production system. These tests involved comparing growth, color and quality of the lettuce cultivars grown under VEGGIE LED array (Orbitec, Madison, WI) or Biomass Production System for Education ((BSEe), Orbitec, Madison, WI) compact fluorescent lamps using a gravity feed water delivery system. Mission relevant conditions of CO2, temperature and RH were maintained using controlled environment chambers (EGC, Chagrin Falls, OH). Growth data was obtained for the two red leaf lettuce cultivars, Outredgeous and Firecracker, and the green Bibb lettuce cultivar, Flandria. Growth and quality was evaluated using different concentrations (7.5 g/L and 15 g/L) of commercial slow release fertilizer (Osmocote Plus 15-9-12, Scotts, Maryville, OH) and Nutricote 18-6-8 (Florikan, Sarasota, FL) in either a peat/vermiculite media (sunshine LP5 MiX, Sungro, Bellview, WA) or calcined montmorillonite clay [(arcillite,)Turface Proleague, Profile LLC, Buffalo Grove, IL]. The commercial peat/vermiculite mix generally resulted in larger plants than those grown in arcillite. Increasing the concentration of Osmocote from 7.5 to 15 g/L increased the height, dry mass, and leaf area of lettuce cultivars. In contrast, there was a decrease in growth parameters when concentration of Nutricote was increased from 7.5 to 15 g/L. The best growth was obtained with the 7.5 g/L Nutricote using a commercial peat/vermiculite mixture. This media was used for field testing VEGGIE plant system in the 2010 DRAT test. The VEGGIE nutrient delivery system worked well, was able to be maintained by multiple operators with a minimum of training, and supported excellent lettuce growth for the duration of the 14-day test. The operational DRAT field testing in the HDU identified light quality issues related to morphology and pigment development that will need to be addressed through additional testing. Feedback from the crew, ground support personnel, and human factors leads was uniformly positive on the psychological value of having the crop production system in the pressurized excursion module. Data are being used to design a plant atrium with LED lighting to evaluate salad crop growth during NASA's 2011 DRATS test.

Stutte, Gary W.↗

NASA NTRS2001

Genetic and chemical reductions in protein phosphatase activity alter auxin transport, gravity response, and lateral root growth

Auxin transport is required for important growth and developmental processes in plants, including gravity response and lateral root growth. Several lines of evidence suggest that reversible protein phosphorylation regulates auxin transport. Arabidopsis rcn1 mutant seedlings exhibit reduced protein phosphatase 2A activity and defects in differential cell elongation. Here we report that reduced phosphatase activity alters auxin transport and dependent physiological processes in the seedling root. Root basipetal transport was increased in rcn1 or phosphatase inhibitor-treated seedlings but showed normal sensitivity to the auxin transport inhibitor naphthylphthalamic acid (NPA). Phosphatase inhibition reduced root gravity response and delayed the establishment of differential auxin-induced gene expression across a gravity-stimulated root tip. An NPA treatment that reduced basipetal transport in rcn1 and cantharidin-treated wild-type plants also restored a normal gravity response and asymmetric auxin-induced gene expression, indicating that increased basipetal auxin transport impedes gravitropism. Increased auxin transport in rcn1 or phosphatase inhibitor-treated seedlings did not require the AGR1/EIR1/PIN2/WAV6 or AUX1 gene products. In contrast to basipetal transport, root acropetal transport was normal in phosphatase-inhibited seedlings in the absence of NPA, although it showed reduced NPA sensitivity. Lateral root growth also exhibited reduced NPA sensitivity in rcn1 seedlings, consistent with acropetal transport controlling lateral root growth. These results support the role of protein phosphorylation in regulating auxin transport and suggest that the acropetal and basipetal auxin transport streams are differentially regulated.

NASA Discipline Plant Biology↗

NASA NTRS2015

Technical Report Series on Global Modeling and Data Assimilation: Soil Moisture Active Passive (SMAP) Project Assessment Report for the Beta-Release L4_SM Data Product - Volume 40

During the post-launch SMAP calibration and validation (Cal/Val) phase there are two objectives for each science data product team: 1) calibrate, verify, and improve the performance of the science algorithm, and 2) validate the accuracy of the science data product as specified in the science requirements and according to the Cal/Val schedule. This report provides an assessment of the SMAP Level 4 Surface and Root Zone Soil Moisture Passive (L4_SM) product specifically for the product's public beta release scheduled for 30 October 2015. The primary objective of the beta release is to allow users to familiarize themselves with the data product before the validated product becomes available. The beta release also allows users to conduct their own assessment of the data and to provide feedback to the L4_SM science data product team. The assessment of the L4_SM data product includes comparisons of SMAP L4_SM soil moisture estimates with in situ soil moisture observations from core validation sites and sparse networks. The assessment further includes a global evaluation of the internal diagnostics from the ensemble-based data assimilation system that is used to generate the L4_SM product. This evaluation focuses on the statistics of the observation-minus-forecast (O-F) residuals and the analysis increments. Together, the core validation site comparisons and the statistics of the assimilation diagnostics are considered primary validation methodologies for the L4_SM product. Comparisons against in situ measurements from regional-scale sparse networks are considered a secondary validation methodology because such in situ measurements are subject to upscaling errors from the point-scale to the grid cell scale of the data product. Based on the limited set of core validation sites, the assessment presented here meets the criteria established by the Committee on Earth Observing Satellites for Stage 1 validation and supports the beta release of the data. The validation against sparse network measurements and the evaluation of the assimilation diagnostics address Stage 2 validation criteria by expanding the assessment to regional and global scales.

ubRMSE↗

NASA NTRS2017

Validation of SMAP Surface Soil Moisture Products with Core Validation Sites

The NASA Soil Moisture Active Passive (SMAP) mission has utilized a set of core validation sites as the primary methodology in assessing the soil moisture retrieval algorithm performance. Those sites provide well calibrated in situ soil moisture measurements within SMAP product grid pixels for diverse conditions and locations.The estimation of the average soil moisture within the SMAP product grid pixels based on in situ measurements is more reliable when location specific calibration of the sensors has been performed and there is adequate replication over the spatial domain, with an up-scaling function based on analysis using independent estimates of the soil moisture distribution. SMAP fulfilled these requirements through a collaborative CalVal Partner program.This paper presents the results from 34 candidate core validation sites for the first eleven months of the SMAP mission. As a result of the screening of the sites prior to the availability of SMAP data, out of the 34 candidate sites 18 sites fulfilled all the requirements at one of the resolution scales (at least). The rest of the sites are used as secondary information in algorithm evaluation. The results indicate that the SMAP radiometer-based soil moisture data product meets its expected performance of 0.04 cu m/cu m volumetric soil moisture (unbiased root mean square error); the combined radar-radiometer product is close to its expected performance of 0.04 cu m/cu m, and the radar-based product meets its target accuracy of 0.06 cu m/cu m (the lengths of the combined and radar-based products are truncated to about 10 weeks because of the SMAP radar failure). Upon completing the intensive CalVal phase of the mission the SMAP project will continue to enhance the products in the primary and extended geographic domains, in co-operation with the CalVal Partners, by continuing the comparisons over the existing core validation sites and inclusion of candidate sites that can address shortcomings.

SMAP↗

NASA NTRS2018

Toward Long-Term Aquatic Science Products from Heritage Landsat Missions

This paper aims at generating a long-term consistent record of Landsat-derived remote sensing reflectance (Rrs) products, which are central for producing downstream aquatic science products (e.g., concentrations of total suspended solids). The products are derived from Landsat-5 and Landsat-7 observations leading to Landsat-8 era to enable retrospective analyses of inland and nearshore coastal waters. In doing so, the data processing was built into the SeaWiFS Data Analysis System (SeaDAS) followed by vicariously calibrating Landsat-7 and -5 data using reference in situ measurements and near-concurrent ocean color products, respectively. The derived Rrs products are then validated using (a) matchups using the Aerosol Robotic Network (AERONET) data measured by in situ radiometers, i.e., AERONET-OC, and (b) ocean color products at select sites in North America. Following the vicarious calibration adjustments, it is found that the overall biases in Rrs products are significantly reduced. The root-mean-square errors (RMSE), however, indicate noticeable uncertainties due to random and systematic noise. Long-term (since 1984) seasonal Rrs composites over 12 coastal and inland systems are further evaluated to explore the utility of Landsat archive processed via SeaDAS. With all the qualitative and quantitative assessments, it is concluded that with careful algorithm developments, it is possible to discern natural variability in historic water quality conditions using heritage Landsat missions. This requires the changes in Rrs exceed maximum expected uncertainties, i.e., 0.0015 [1/sr], estimated from mean RMSEs associated with the matchups and intercomparison analyses. It is also anticipated that Landsat-5 products will be less susceptible to uncertainties in turbid waters with Rrs(660) > 0.004 [1/sr], which is equivalent of ~1.2% reflectance. Overall, end-users may utilize heritage Rrs products with "fitness-for-purpose" concept in mind, i.e., products could be valuable for one application but may not be viable for another. Further research should be dedicated to enhancing atmospheric correction to account for non-negligible near-infrared reflectance in CDOM-rich and extremely turbid waters.

Pahlevan, Nima↗

DOE OSTI2026

Local Resource Assessment: Beetle-Killed Spruce in Alaska

This report synthesizes forest inventory and spatial data from federal and state sources to present a snapshot of beetle-killed spruce across Southcentral and Interior Alaska. This natural resource is under investigation for use in cellulose-based products, particularly building insulation. Research funded by the Department of Energy's ARPA-E program, has successfully developed insulation - Celium - using beetle-killed spruce combined with mycelium, the root network of fungi. The resulting insulation product can be manufactured locally and used across all Alaskan climate zones for residential, commercial, and shipping applications. Removing standing dead wood also contributes to wildfire risk reduction and mitigates associated public health impacts. This Local Resource Assessment, funded by the Denali Commission, contextualizes and reconciles unaligned forestry data sources, establishing a pathway to refined, replicable analysis and, ultimately, presenting estimates of beetle-killed spruce biomass to inform the potential scale and development of a Celium industry.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2022

Deconstructing the root system of grasses through an exploration of development, anatomy and function

Abstract Well‐adapted root systems allow plants to grow under resource‐limiting environmental conditions and are important determinants of yield in agricultural systems. Important staple crops such as rice and maize belong to the family of grasses, which develop a complex root system that consists of an embryonic root system that emerges from the seed, and a postembryonic nodal root system that emerges from basal regions of the shoot after germination. While early seedling establishment is dependent on the embryonic root system, the nodal root system, and its associated branches, gains in importance as the plant matures and will ultimately constitute the bulk of below‐ground growth. In this review, we aim to give an overview of the different root types that develop in cereal grass root systems, explore the different physiological roles they play by defining their anatomical features, and outline the genetic networks that control their development. Through this deconstructed view of grass root system function, we provide a parts‐list of elements that function together in an integrated root system to promote survival and crop productivity.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1989

Interior Landscape Plants for Indoor Air Pollution Abatement

In this study, the leaves, roots, soil, and associated microorganisms of plants have been evaluated as a possible means of reducing indoor air pollutants. Additionally, a novel approach of using plant systems for removing high concentrations of indoor air pollutants such as cigarette smoke, organic solvents, and possibly radon has been designed from this work. This air filter design combines plants with an activated carbon filter. The rationale for this design, which evolved from wastewater treatment studies, is based on moving large volumes of contaminated air through an activated carbon bed where smoke, organic chemicals, pathogenic microorganisms (if present), and possibly radon are absorbed by the carbon filter. Plant roots and their associated microorganisms then destroy the pathogenic viruses, bacteria, and the organic chemicals, eventually converting all of these air pollutants into new plant tissue. It is believed that the decayed radon products would be taken up the plant roots and retained in the plant tissue.

Wolverton, B. C.↗

DOE OSTI2021

Serendipita Fungi Modulate the Switchgrass Root Transcriptome to Circumvent Host Defenses and Establish a Symbiotic Relationship

The fungal family Serendipitaceae encompasses root-associated lineages with endophytic, ericoid, orchid, and ectomycorrhizal lifestyles. Switchgrass is an important bioenergy crop for cellulosic ethanol production owing to high biomass production on marginal soils otherwise unfit for food crop cultivation. The aim of this study was to investigate the host plant responses to Serendipita spp. colonization by characterizing the switchgrass root transcriptome during different stages of symbiosis in vitro. For this, we included a native switchgrass strain, Serendipita bescii, and a related strain, S. vermifera, isolated from Australian orchids. Serendipita colonization progresses from thin hyphae that grow between root cells to, finally, the production of large, bulbous hyphae that fill root cells during the later stages of colonization. We report that switchgrass seems to perceive both fungi prior to physical contact, leading to the activation of chemical and structural defense responses and putative host disease resistance genes. Subsequently, the host defense system appears to be quenched and carbohydrate metabolism adjusted, potentially to accommodate the fungal symbiont. In addition, prior to contact, switchgrass exhibited significant increases in root hair density and root surface area. Furthermore, genes involved in phytohormone metabolism such as gibberellin, jasmonic acid, and salicylic acid were activated during different stages of colonization. Both fungal strains induced plant gene expression in a similar manner, indicating a conserved plant response to members of this fungal order. Understanding plant responsiveness to Serendipita spp. will inform our efforts to integrate them into forages and row crops for optimal plant–microbe functioning, thus facilitating low-input, sustainable agricultural practices.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1994

Isatin as an auxin source favoring floral and vegetative shoot regeneration from calli produced by thin layer explants of tomato pedicel

Thin layer explants taken from the pedicels and peduncles of flowering tomato plants yielded calli with great organogenetic potential. Of the 15 cultivars tested, 7 regenerated roots, shoots and eventually entire fruit-bearing plants. Calli grown on modified Murashige-Skoog medium responded to varied auxins and cytokinins with different morphogenetic patterns. Thus, naphthaleneacetic acid yielded root-producing calli, while the auxin precursor isatin (indole 2,3-dione) caused the production of calli with vegetative and floral shoots, rarely yielding roots. This may be related to isatin's slow, steady conversion to an active auxin (Plant Physiol 41:1485-1488, 1966) in contrast with naphthaleneacetic acid's immediate presentation of a high level of active auxin. The highest incidence of vegetative shoot (100%) and flower (50%) formation was obtained with 10 micromoles isatin and 3 micromoles zeatin. A few of the flowers developed into ripe fruits. The high frequency of induction of vegetative shoots and flowers before roots with isatin suggests its utility in micropropagation from plant tissue cultures.

NASA Discipline Life Support Systems↗

DOE OSTI2021

Multiple Sources of Solar High-energy Protons

During the 24th solar cycle, the Fermi Large Area Telescope (LAT) has observed a total of 27 solar flares possessing delayed γ -ray emission, including the exceptionally well-observed flare and coronal mass ejection (CME) on 2017 September 10. Based on the Fermi/LAT data, we plot, for the first time, maps of possible sources of the delayed >100 MeV γ -ray emission of the 2017 September 10 event. The long-lasting γ -ray emission is localized under the CME core. The γ -ray spectrum exhibits intermittent changes in time, implying that more than one source of high-energy protons was formed during the flare–CME eruption. We find a good statistical correlation between the γ -ray fluences of the Fermi/LAT-observed delayed events and the products of corresponding CME speed and the square root of the soft X-ray flare magnitude. Data support the idea that both flares and CMEs jointly contribute to the production of subrelativistic and relativistic protons near the Sun.

79 ASTRONOMY AND ASTROPHYSICS↗