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At least 181 records · Page 10
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

ILI Code

This R code consists of three scripts, described below. 1. ILI_LHC_sample.R The first script generate 10,000 samples from the total parameter space formed by the ranges of the following five parameters inputted into the ILI model: transmission rate (beta), per capita rate of progress from exposed to infectious state (gamma_1), per capita rate of progress through initial infectious state (gamma_2), per capita rate of progress through hospitalized state (gamma_3), and per capita rate of progress through non-hospitalized infectious state (gamma_4). The output is LHS_samples.csv, for input into the global sensitivity script, ILI_SEIR. 2. ILI_SEIR.R The second script solves a standard Susceptible-Exposed-Infected- Recovered (SEIR) model (a system of Ordinary Differential Equations (ODEs)), runs global sensitivity analyses, and generates plots showing the impact of the input variables on the response variables for each virus. 3. virus_sims.R The third script solves a standard Susceptible-Exposed-Infected- Recovered (SEIR) model (a system of Ordinary Differential Equations (ODEs)), aimed at modeling outbreaks for five common upper respiratory viruses within a contained population. The output of this code is an epidemic curve to show timing and magnitude of the epidemic peak for each virus. Note: for all three scripts, the parameter values must be hard-coded by the user or the output will not be accurate.

Spencer, Julie↗
NASA NTRS2012

The Exact Solution for Linear Thermoelastic Axisymmetric Deformations of Generally Laminated Circular Cylindrical Shells

A detailed exact solution is presented for laminated-composite circular cylinders with general wall construction and that undergo axisymmetric deformations. The overall solution is formulated in a general, systematic way and is based on the solution of a single fourth-order, nonhomogeneous ordinary differential equation with constant coefficients in which the radial displacement is the dependent variable. Moreover, the effects of general anisotropy are included and positive-definiteness of the strain energy is used to define uniquely the form of the basis functions spanning the solution space of the ordinary differential equation. Loading conditions are considered that include axisymmetric edge loads, surface tractions, and temperature fields. Likewise, all possible axisymmetric boundary conditions are considered. Results are presented for five examples that demonstrate a wide range of behavior for specially orthotropic and fully anisotropic cylinders.

Nemeth, Michael P.↗
NASA NTRS1989

Supercritical flow past a symmetrical bicircular arc airfoil

A numerical scheme is developed for computing steady supercritical flow about symmetrical airfoils, applying it to an ellipse for zero angle of attack. An algorithmic description of this new scheme is presented. Application to a symmetrical bicircular arc airfoil is also proposed. The flow field before the shock is region 1. For transonic flow, singularity can be avoided by integrating the resulting ordinary differential equations away from the body. Region 2 contains the shock which will be located by shock fitting techniques. The shock divides region 2 into supersonic and subsonic regions and there is no singularity problem in this case. The Method of Lines is used in this region and it is advantageous to integrate the resulting ordinary differential equation along the body for shock fitting. Coaxial coordinates have to be used for the bicircular arc airfoil so that boundary values on the airfoil body can be taken with one direction of the coaxial coordinates fixed. To avoid taking boundary values at + or - infinity in the coaxial co-ordinary system, approximate analytical representation of the flow field near the tips of the airfoil is proposed.

Holt, Maurice↗
NASA NTRS1969

Variable-mesh method of solving differential equations

Multistep predictor-corrector method for numerical solution of ordinary differential equations retains high local accuracy and convergence properties. In addition, the method was developed in a form conducive to the generation of effective criteria for the selection of subsequent step sizes in step-by-step solution of differential equations.

Van Wyk, R.↗
NASA NTRS1983

A study of dynamic energy equations for Stirling cycle analysis

An analytical and computer study of the dynamic energy equations that describe the physical phenomena that occurs in a Stirling cycle engine. The basic problem is set up in terms of a set o hyperbolic partial differential equations. The characteristic lines are determined. The equations are then transformed to ordinary differential equations that are valid along characteristic lines. Computer programs to solve the differential equations and to plot pertinent factors are described.

Larson, V. H.↗
NASA NTRS1993

Multiple large-scale coherent mode interactions in a developing round jet

The integral energy method has been used to study the nonlinear interactions of the large-scale coherent structure in a spatially developing round jet. The streamwise development of a jet is obtained in terms of the mean flow shear-layer momentum thickness, the wave-mode kinetic energy and the wave-mode phase angle. With the energy method, a system of partial differential equations is reduced to a system of ordinary differential equations. The nonlinear differential equations are solved with initial conditions which are given at the nozzle exit. It is shown that the initial wave-mode energy densities as well as the initial phase angles play a significant role in the streamwise evolution of the large-scale coherent wave modes and the mean flow.

Lee, Sang S.↗
NASA NTRS2016

Light Diffraction by Large Amplitude Ultrasonic Waves in Liquids

Light diffraction from ultrasound, which can be used to investigate nonlinear acoustic phenomena in liquids, is reported for wave amplitudes larger than that typically reported in the literature. Large amplitude waves result in waveform distortion due to the nonlinearity of the medium that generates harmonics and produces asymmetries in the light diffraction pattern. For standing waves with amplitudes above a threshold value, subharmonics are generated in addition to the harmonics and produce additional diffraction orders of the incident light. With increasing drive amplitude above the threshold a cascade of period-doubling subharmonics are generated, terminating in a region characterized by a random, incoherent (chaotic) diffraction pattern. To explain the experimental results a toy model is introduced, which is derived from traveling wave solutions of the nonlinear wave equation corresponding to the fundamental and second harmonic standing waves. The toy model reduces the nonlinear partial differential equation to a mathematically more tractable nonlinear ordinary differential equation. The model predicts the experimentally observed cascade of period-doubling subharmonics terminating in chaos that occurs with increasing drive amplitudes above the threshold value. The calculated threshold amplitude is consistent with the value estimated from the experimental data.

Adler, Laszlo↗
DOE OSTI2026

Data and scripts associated with a manuscript modeling microbial regulation of priming effects

This data package is associated with the publication “Modeling Microbial Regulatory Feedback in Organic Matter Decomposition Identifies Copiotrophic Traits as Key Drivers of Positive Priming” published as a preprint on BioRXiv by Ahamed et al. (2026); https://doi.org/10.1101/2024.08.11.607483. The package contains MATLAB scripts and saved simulation outputs used to implement a cybernetic model of microbial regulation during complex organic matter (OM) decomposition governing priming effects. It includes models of (i) single microbial functional groups (copiotrophic or oligotrophic degraders) and (ii) binary consortia composed of degraders and non-degraders with contrasting or common growth traits. Simulation results were generated using Monte Carlo analyses, with randomized key model parameters across a range of environmental mixing fractions of complex and labile OM. The dataset was created to provide a transparent and reusable computational framework for systematically exploring how microbial growth traits, metabolic regulation, and community composition influence OM decomposition dynamics and priming effects. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. In addition to a readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes the variable definitions. This package includes: (1) annotated MATLAB code implementing the system of ordinary differential equations and cybernetic control laws; (2) saved output files containing data (e.g., biomass, substrates, enzyme levels, priming metrics); and (3) scripts for processing saved outputs and regenerating figures. Specifically, the data package contains three main MATLAB scripts: runPrimingModel.m, runPlotData.m, and runPlotSuppFigS1.m, along with this readme and supporting documentation. Users should begin with runPrimingModel.m, which contains the annotated code implementing the system of ordinary differential equations and cybernetic control laws. This script runs the Monte Carlo simulations of microbial OM decomposition and allows users to modify microbial trait definitions, adjust parameter distributions, or define new community configurations. Simulation outputs are automatically saved as .mat files in the folder named SavedData, which stores all pre-generated results included in this package. The second script, runPlotData.m, reads files from the SavedData folder and processes them to regenerate the figures presented in the manuscript. The third script, runPlotSuppFigS1.m, specifically generates Figure S1 in the Supplementary Material of the manuscript. The package also includes the aforementioned files in non-proprietary .txt format. If users intend to use them, they should first save the files in their respective .m or .mat formats prior to execution in MATLAB.

Biomass concentration↗
NASA NTRS1989

An investigation of a mathematical model of an optically pumped Ti(3+):Al2O3 laser system

During the last several years, solid state lasers were developed that have the potential for meeting rigorous performance requirements for space-based remote sensing of the atmosphere. In order to design a stable and efficient laser and to understand the effect on laser output of changes in the physical and design parameters, an understanding of the development of the dynamical processes of the laser is necessary. Typically, the dynamical processes in a laser system are investigated via rate equations describing the evolution of the occupancy in the electronic levels and of the photon density in the laser cavity. There are two approaches to this type of study. Most often, for the sake of simplicity, the spatial variations of the dynamic variables in the laser system are disregarded and the mathematical model consists of a system of first order nonlinear ordinary differential equations (ODE). The second approach is to take into account both spatial and temporal variations in the dynamic variables in the laser cavity. The resulting model consists of a first order semilinear system of partial differential equations (PDE). The model which was studied was studied was generic in the sense that it was a four-level laser system, but the parameters used in the numerical study were specific to Titanium-doped sapphire. For simplicity, a constant, spatially uniform pumping scheme was considered. In addition, a simplification of the model was made so that it treats a single lasing wavelength with a narrow bandwidth. The purpose was to investigate both versions of the mathematical model and to determine whether the numerical solutions are similar both qualitatively and quantitatively. The systems of ordinary differential equations were solved numerically using a Runge-Kutta-Fehlberg algorithm which was very efficient for typical values of the physical parameters. A numerical scheme, based on the Modified Euler method, for computing solutions to the system of partial differential equations was developed and implemented. The PDE model was solved numerically at the expense of greatly increased computer time.

Roberts, Lila F.↗
DOE OSTI2023

The role of stiffness in training and generalization of ResNets

Neural ordinary differential equations (NODEs) have recently regained popularity as large-depth limits of a large class of neural networks. In particular, residual neural networks (ResNets) are equivalent to an explicit Euler discretization of an underlying NODE, where the transition from one layer to the next is one time step of the discretization. The relationship between continuous and discrete neural networks has been of particular interest. Notably, analysis from the ordinary differential equation viewpoint can potentially lead to new insights for understanding the behavior of neural networks in general. In this work, we take inspiration from differential equations to define the concept of stiffness for a ResNet via the interpretation of a ResNet as the discretization of a NODE. Here, we then examine the effects of stiffness on the ability of a ResNet to generalize, via computational studies on example problems coming from climate and chemistry models. We find that penalizing stiffness does have a unique regularizing effect, but we see no benefit to penalizing stiffness over L 2 regularization (penalization of network parameter norms) in terms of predictive performance.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1987

A low dimensional dynamical system for the wall layer

Low dimensional dynamical systems which model a fully developed turbulent wall layer were derived.The model is based on the optimally fast convergent proper orthogonal decomposition, or Karhunen-Loeve expansion. This decomposition provides a set of eigenfunctions which are derived from the autocorrelation tensor at zero time lag. Via Galerkin projection, low dimensional sets of ordinary differential equations in time, for the coefficients of the expansion, were derived from the Navier-Stokes equations. The energy loss to the unresolved modes was modeled by an eddy viscosity representation, analogous to Heisenberg's spectral model. A set of eigenfunctions and eigenvalues were obtained from direct numerical simulation of a plane channel at a Reynolds number of 6600, based on the mean centerline velocity and the channel width flow and compared with previous work done by Herzog. Using the new eigenvalues and eigenfunctions, a new ten dimensional set of ordinary differential equations were derived using five non-zero cross-stream Fourier modes with a periodic length of 377 wall units. The dynamical system was integrated for a range of the eddy viscosity prameter alpha. This work is encouraging.

Aubry, N.↗
NASA NTRS1973

A general conclusion regarding the large amplitude flexural vibration of beams and plates.

Use is made of the two coupled partial differential equations that govern the large amplitude flexural vibration of flat plates. On the basis of an assumed vibration mode taken to be separable in the space coordinates and time, the modal equation is obtained. In the case of a one-term solution, it is shown that the modal equation is the same as the dynamic equation of a mass-spring combination where the restoring force of the nonlinear spring is a cubic and an odd function of the displacement. Since the modal equation is a nonlinear, ordinary differential equation with positive coefficients, it is shown that the nonlinearity associated with the large amplitude flexural vibration of beams and plates is of the hardening type, that is, the frequency increases with amplitude.

Pandalai, K. A. V.↗
NASA NTRS1990

The Design-To-Cost Manifold

Design-to-cost is a popular technique for controlling costs. Although qualitative techniques exist for implementing design to cost, quantitative methods are sparse. In the launch vehicle and spacecraft engineering process, the question whether to minimize mass is usually an issue. The lack of quantification in this issue leads to arguments on both sides. This paper presents a mathematical technique which both quantifies the design-to-cost process and the mass/complexity issue. Parametric cost analysis generates and applies mathematical formulas called cost estimating relationships. In their most common forms, they are continuous and differentiable. This property permits the application of the mathematics of differentiable manifolds. Although the terminology sounds formidable, the application of the techniques requires only a knowledge of linear algebra and ordinary differential equations, common subjects in undergraduate scientific and engineering curricula. When the cost c is expressed as a differentiable function of n system metrics, setting the cost c to be a constant generates an n-1 dimensional subspace of the space of system metrics such that any set of metric values in that space satisfies the constant design-to-cost criterion. This space is a differentiable manifold upon which all mathematical properties of a differentiable manifold may be applied. One important property is that an easily implemented system of ordinary differential equations exists which permits optimization of any function of the system metrics, mass for example, over the design-to-cost manifold. A dual set of equations defines the directions of maximum and minimum cost change. A simplified approximation of the PRICE H(TM) production-production cost is used to generate this set of differential equations over [mass, complexity] space. The equations are solved in closed form to obtain the one dimensional design-to-cost trade and design-for-cost spaces. Preliminary results indicate that cost is relatively insensitive to changes in mass and that the reduction of complexity, both in the manufacturing process and of the spacecraft, is dominant in reducing cost.

Dean, Edwin B.↗
DOE OSTI2024

CryoTRANS: predicting high-resolution maps of rare conformations from self-supervised trajectories in cryo-EM

Cryogenic electron microscopy (cryo-EM) has revolutionized structural biology, enabling efficient determination of structures at near-atomic resolutions. However, a common challenge arises from the severe imbalance among various conformations of vitrified particles, leading to low-resolution reconstructions in rare conformations due to a lack of particle images in these quasi-stable states. We introduce CryoTRANS, a method that predicts high-resolution maps of rare conformations by constructing a self-supervised pseudo-trajectory between density maps of varying resolutions. This trajectory is represented by an ordinary differential equation parameterized by a deep neural network, ensuring retention of detailed structures from high-resolution density maps. By leveraging a single high-resolution density map, CryoTRANS significantly improves the reconstruction of rare conformations and has been validated on four real-world datasets: alpha-2-macroglobulin, actin-binding protein complexes, SARS-CoV-2 spike glycoprotein, and the 70S ribosome. CryoTRANS can also predict high-resolution structures in cryogenic electron tomography maps using a high-resolution cryo-EM map.Cryogenic electron microscopy (cryo-EM) has revolutionized structural biology, enabling efficient determination of structures at near-atomic resolutions. However, a common challenge arises from the severe imbalance among various conformations of vitrified particles, leading to low-resolution reconstructions in rare conformations due to a lack of particle images in these quasi-stable states. We introduce CryoTRANS, a method that predicts high-resolution maps of rare conformations by constructing a self-supervised pseudo-trajectory between density maps of varying resolutions. This trajectory is represented by an ordinary differential equation parameterized by a deep neural network, ensuring retention of detailed structures from high-resolution density maps. By leveraging a single high-resolution density map, CryoTRANS significantly improves the reconstruction of rare conformations and has been validated on four real-world datasets: alpha-2-macroglobulin, actin-binding protein complexes, SARS-CoV-2 spike glycoprotein, and the 70S ribosome. CryoTRANS can also predict high-resolution structures in cryogenic electron tomography maps using a high-resolution cryo-EM map.

47 OTHER INSTRUMENTATION↗
DOE OSTI2022

State elimination for mixed‐integer optimal control of partial differential equations by semigroup theory

Abstract Mixed‐integer optimal control problems governed by partial differential equations (MIPDECOs) are powerful modeling tools but also challenging in terms of theory and computation. We propose a highly efficient state elimination approach for MIPDECOs that are governed by partial differential equations that have the structure of an abstract ordinary differential equation in function space. This allows us to avoid repeated calculations of the states for all time steps, and our approach is applied only once before starting the optimization. The presentation of theoretical results is complemented by numerical experiments.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Exponential Time Differencing Schemes for Fuel Depletion and Transport in Molten Salt Reactors: Theory and Implementation

A numerical framework for modeling depletion and mass transport in liquid-fueled molten salt reactions is presented based on exponential time differencing. The solution method involves using the finite volume method to transform the system of partial differential equations (PDEs) into a much larger system of ordinary differential equations. The key part of this method involves solving for the exponential of a matrix. We explore six different algorithms to compute the exponential in a series of progression problems that explore physical transport phenomena in molten salt reactors. This framework shows good results for solving linear parabolic PDEs with each of the six matrix exponential algorithms. For large problems, the series solvers such as Padé and Taylor have large run times, which can be mitigated by using the Krylov subspace.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
NASA NTRS1972

Calculation of turbulent boundary layers with heat transfer and pressure gradient utilizing a compressibility transformation. Part 3: Computer program manual

A computer program is described capable of determining the properties of a compressible turbulent boundary layer with pressure gradient and heat transfer. The program treats the two-dimensional problem assuming perfect gas and Crocco integral energy solution. A compressibility transformation is applied to the equation for the conservation of mass and momentum, which relates this flow to a low speed constant property flow with simultaneous mass transfer and pressure gradient. The resulting system of describing equations consists of eight ordinary differential equations which are solved numerically. For Part 1, see N72-12226; for Part 2, see N72-15264.

Schneider, J.↗