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At least 181 records · Page 10

Knowledge Oriented Graph Unified Transformer (KOGUT) v0.1

KOGUT — Knowledge Oriented Graph Unified Transformer KOGUT implements the Relational Graph Transformer (RelGT) architecture for knowledge graph link prediction in biological domains, with a primary focus on microbial growth media prediction. While the original RelGT (arXiv:2505.10960) targets relational tables, time series, and multi-table databases, KOGUT adapts this architecture for heterogeneous biological knowledge graphs, providing first-in-class AI predictive models for microbial cultivation. Key Adaptations Beyond Original RelGT: - Knowledge Graph Focus: Applied to biological KGs with semantic node types (taxa, chemicals, media, phenotypes, environments) versus generic relational database tables, trained on the KG-Microbe knowledge graph (1.3M entities, 2.9M edges, 24 relation types). - Multimodal Node Encoding: Integrates node labels, categories, descriptions, and synonyms from KG metadata through learned embedding layers—adapting relational column features to graph node attributes with textual semantics. - Extended K-Hop Subgraph Strategy: Optimized neighborhood sampling (3-hop default, configurable up to 200 nodes) tuned for sparse biological networks, building on the original local-global attention framework with biological relation preservation. - Biolink Predicate Preservation: Type-specific transformations for 24 biological edge semantics (occurs_in, consumes, produces, has_phenotype, subclass_of) beyond standard relational foreign keys, enabling multi-relation link prediction. - Inductive Learning Support: Enables zero-shot predictions for novel taxa through feature-based embeddings (temperature, oxygen requirements, gram stain, cell shape), extending the original transductive relational benchmark scope to uncultured microorganisms. CheapSOTA Performance Optimizations (This Distribution): - VQ-EMA Centroid Attention: Vector quantization with exponential moving average for improved global context modeling (+5-10% MRR improvement). - HDF5 Precomputed Data Loading: One-time preprocessing of k-hop subgraphs to eliminate redundant graph traversals (2-5× training speedup). - Distributed Data Parallel Training: Multi-GPU support for scaling to larger knowledge graphs (tested on 4× NVIDIA A100 GPUs at NERSC Perlmutter). - Mixed Precision Training: Automatic mixed precision (AMP) for memory efficiency and faster training. Advantages Over Standard Knowledge Graph Embedding Models: Combines RelGT's proven multi-element tokenization (features, type, hop, structure) with graph-native biological representations, enabling interpretable link prediction across heterogeneous entities that standard embedding models (TransE, RotatE, ComplEx) and table-based transformers cannot directly model. Achieves near-perfect performance on microbial growth media prediction (MRR: 0.9966, Precision@1: 0.9932, Hit@10: 1.0000) while maintaining explainability through attention-based reasoning over biological pathways. Training Data: - KG-Microbe merged knowledge graph: 1,379,337 nodes, 2,960,472 edges - 24 biological relation types including taxonomic hierarchies, metabolic interactions, phenotype associations, and environmental relationships - Primary prediction task: Growth media suitability for microbial taxa (biolink:occurs_in, 50K edges) - Multi-relation capability: Predicts links for any of the 24 relation types, including chemical consumption/production, phenotype associations, and taxonomic classification Citation: Original RelGT Architecture: Dwivedi et al., "Relational Graph Transformer", arXiv:2505.10960, 2025 KOGUT Implementation: Knowledge Oriented Graph Unified Transformer for Microbial Growth Media Prediction Developed at Lawrence Berkeley National Laboratory (LBNL) Trained on NERSC Perlmutter supercomputer

Joachimiak, Marcin [Lawrence Berkeley National Lab↗

Effect of simulated glaze ice on a rectangular wing

Experimental measurements of the effect of simulated glaze ice on a three-dimensional wing are presented. A semispan wing of effective aspect ratio five was mounted from a splitter plate in the OSU subsonic wind tunnel. The model has a straight, untwisted rectangular platform, and uses a NACA 0012 airfoil section. Surface pressures were measured at 5 semispan locations and a total-pressure wake-survey probe was used on the model centerline. The section lift and drag data from the model centerline compared well to earlier two-dimensional data. These data show a large drag and maximum lift penalty due to the simulated glaze ice. Three-dimensional span-load data compare well to computational results.

Bragg, M. B.↗

A Generalized Hydrodynamic-Impact Theory for the Loads and Motions of Deeply Immersed Prismatic Bodies

A theory is derived for determining the loads and motions of a deeply immersed prismatic body. The method makes use of a two-dimensional water-mass variation and an aspect-ratio correction for three-dimensional flow. The equations of motion are generalized by using a mean value of the aspect-ratio correction and by assuming a variation of the two-dimensional water mass for the deeply immersed body. These equations lead to impact coefficients that depend on an approach parameter which, in turn, depends upon the initial trim and flight-path angles. Comparison of experiment with theory is shown at maximum load and maximum penetration for the flat-bottom (0 deg dead-rise angle) model with bean-loading coefficients from 36.5 to 133.7 over a wide range of initial conditions. A dead-rise angle correction is applied and maximum-load data are compared with theory for the case of a model with 300 dead-rise angle and beam-loading coefficients from 208 to 530.

Markey, Melvin F.↗

Differentially Private K -Means Clustering Applied to Meter Data Analysis and Synthesis

The proliferation of smart meters has resulted in a large amount of data being generated. It is increasingly apparent that methods are required for allowing a variety of stakeholders to leverage the data in a manner that preserves the privacy of the consumers. The sector is scrambling to define policies, such as the so called ‘15/15 rule’, to respond to the need. However, the current policies fail to adequately guarantee privacy. Here, in this paper, we address the problem of allowing third parties to apply K-means clustering, obtaining customer labels and centroids for a set of load time series by applying the framework of differential privacy. We leverage the method to design an algorithm that generates differentially private synthetic load data consistent with the labeled data. We test our algorithm’s utility by answering summary statistics such as average daily load profiles for a 2-dimensional synthetic dataset and a real-world power load dataset.

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Sustainable Campus with PEV and Microgrid

Market penetration of electric vehicles (EVs) is gaining momentum, as is the move towards increasingly distributed, clean and renewable electricity sources. EV charging shifts a significant portion of transportation energy use onto building electricity meters. Hence, integration strategies for energy-efficiency in buildings and transport sectors are of increasing importance. This paper focuses on a portion of that integration: the analysis of an optimal interaction of EVs with a building-serving transformer, and coupling it to a microgrid that includes PV, a fuel cell and a natural gas micro-turbine. The test-case is the Nanyang Technological University (NTU), Singapore campus. The system under study is the Laboratory of Clean Energy Research (LaCER) Lab that houses the award winning Microgrid Energy Management System (MG-EMS) project. The paper analyses three different case scenarios to estimate the number of EVs that can be supported by the building transformer serving LaCER. An approximation of the actual load data collected for the building into different time intervals is performed for a transformer loss of life (LOL) calculation. The additional EV loads that can be supported by the transformer with and without the microgrid are analyzed. The numbers of possible EVs that can be charged at any given time under the three scenarios are also determined. The possibility of using EV fleet at NTU campus to achieve demand response capability and intermittent PV output leveling through vehicle to grid (V2G) technology and building energy management systems is also explored.

Singh, Reshma↗

Space Station Freedom Data Assessment Study

The SSF Data Assessment Study was initiated to identify payload and operations data requirements to be supported in the Space Station era. To initiate the study payload requirements from the projected SSF user community were obtained utilizing an electronic questionnaire. The results of the questionnaire were incorporated in a personal computer compatible database used for mission scheduling and end-to-end communications analyses. This paper discusses data flow paths and associated latencies, communications bottlenecks, resource needs versus availability, payload scheduling 'warning flags' and payload data loading requirements for each major milestone in the Space Station buildup sequence. This paper also presents the statistical and analytical assessments produced using the data base, an experiment scheduling program, and a Space Station unique end-to-end simulation model. The modeling concepts and simulation methodologies presented in this paper provide a foundation for forecasting communication requirements and identifying modeling tools to be used in the SSF Tactical Operations Planning (TOP) process.

Johnson, Anngienetta R.↗

Error containment for enabling local checkpoint and recovery

Various embodiments include a parallel processing computer system that detects memory errors as a memory client loads data from memory and disables the memory client from storing data to memory, thereby reducing the likelihood that the memory error propagates to other memory clients. The memory client initiates a stall sequence, while other memory clients continue to execute instructions and the memory continues to service memory load and store operations. When a memory error is detected, a specific bit pattern is stored in conjunction with the data associated with the memory error. When the data is copied from one memory to another memory, the specific bit pattern is also copied, in order to identify the data as having a memory error.

Cherukuri, Naveen↗

Modeling Aircraft Wing Loads from Flight Data Using Neural Networks

Neural networks were used to model wing bending-moment loads, torsion loads, and control surface hinge-moments of the Active Aeroelastic Wing (AAW) aircraft. Accurate loads models are required for the development of control laws designed to increase roll performance through wing twist while not exceeding load limits. Inputs to the model include aircraft rates, accelerations, and control surface positions. Neural networks were chosen to model aircraft loads because they can account for uncharacterized nonlinear effects while retaining the capability to generalize. The accuracy of the neural network models was improved by first developing linear loads models to use as starting points for network training. Neural networks were then trained with flight data for rolls, loaded reversals, wind-up-turns, and individual control surface doublets for load excitation. Generalization was improved by using gain weighting and early stopping. Results are presented for neural network loads models of four wing loads and four control surface hinge moments at Mach 0.90 and an altitude of 15,000 ft. An average model prediction error reduction of 18.6 percent was calculated for the neural network models when compared to the linear models. This paper documents the input data conditioning, input parameter selection, structure, training, and validation of the neural network models.

Allen, Michael J.↗

Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials: A modeling study

Development of an effective antiviral drug for Coronavirus Disease 2019 (COVID-19) is a global health priority. Although several candidate drugs have been identified through in vitro and in vivo models, consistent and compelling evidence from clinical studies is limited. The lack of evidence from clinical trials may stem in part from the imperfect design of the trials. We investigated how clinical trials for antivirals need to be designed, especially focusing on the sample size in randomized controlled trials. A modeling study was conducted to help understand the reasons behind inconsistent clinical trial findings and to design better clinical trials. We first analyzed longitudinal viral load data for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) without antiviral treatment by use of a within-host virus dynamics model. The fitted viral load was categorized into 3 different groups by a clustering approach. Comparison of the estimated parameters showed that the 3 distinct groups were characterized by different virus decay rates (p-value < 0.001). The mean decay rates were 1.17 d -1 (95% CI: 1.06 to 1.27 d -1 ), 0.777 d -1 (0.716 to 0.838 d -1 ), and 0.450 d -1 (0.378 to 0.522 d -1 ) for the 3 groups, respectively. Such heterogeneity in virus dynamics could be a confounding variable if it is associated with treatment allocation in compassionate use programs (i.e., observational studies). Subsequently, we mimicked randomized controlled trials of antivirals by simulation. An antiviral effect causing a 95% to 99% reduction in viral replication was added to the model. To be realistic, we assumed that randomization and treatment are initiated with some time lag after symptom onset. Using the duration of virus shedding as an outcome, the sample size to detect a statistically significant mean difference between the treatment and placebo groups (1:1 allocation) was 13,603 and 11,670 (when the antiviral effect was 95% and 99%, respectively) per group if all patients are enrolled regardless of timing of randomization. The sample size was reduced to 584 and 458 (when the antiviral effect was 95% and 99%, respectively) if only patients who are treated within 1 day of symptom onset are enrolled. We confirmed the sample size was similarly reduced when using cumulative viral load in log scale as an outcome. We used a conventional virus dynamics model, which may not fully reflect the detailed mechanisms of viral dynamics of SARS-CoV-2. The model needs to be calibrated in terms of both parameter settings and model structure, which would yield more reliable sample size calculation. In this study, we found that estimated association in observational studies can be biased due to large heterogeneity in viral dynamics among infected individuals, and statistically significant effect in randomized controlled trials may be difficult to be detected due to small sample size. The sample size can be dramatically reduced by recruiting patients immediately after developing symptoms. We believe this is the first study investigated the study design of clinical trials for antiviral treatment using the viral dynamics model.

60 APPLIED LIFE SCIENCES↗

FAST User Guide

The Flow Analysis Software Toolkit, FAST, is a software environment for visualizing data. FAST is a collection of separate programs (modules) that run simultaneously and allow the user to examine the results of numerical and experimental simulations. The user can load data files, perform calculations on the data, visualize the results of these calculations, construct scenes of 3D graphical objects, and plot, animate and record the scenes. Computational Fluid Dynamics (CFD) visualization is the primary intended use of FAST, but FAST can also assist in the analysis of other types of data. FAST combines the capabilities of such programs as PLOT3D, RIP, SURF, and GAS into one environment with modules that share data. Sharing data between modules eliminates the drudgery of transferring data between programs. All the modules in the FAST environment have a consistent, highly interactive graphical user interface. Most commands are entered by pointing and'clicking. The modular construction of FAST makes it flexible and extensible. The environment can be custom configured and new modules can be developed and added as needed. The following modules have been developed for FAST: VIEWER, FILE IO, CALCULATOR, SURFER, TOPOLOGY, PLOTTER, TITLER, TRACER, ARCGRAPH, GQ, SURFERU, SHOTET, and ISOLEVU. A utility is also included to make the inclusion of user defined modules in the FAST environment easy. The VIEWER module is the central control for the FAST environment. From VIEWER, the user can-change object attributes, interactively position objects in three-dimensional space, define and save scenes, create animations, spawn new FAST modules, add additional view windows, and save and execute command scripts. The FAST User Guide uses text and FAST MAPS (graphical representations of the entire user interface) to guide the user through the use of FAST. Chapters include: Maps, Overview, Tips, Getting Started Tutorial, a separate chapter for each module, file formats, and system administration.

Walatka, Pamela P.↗

WISP: Watching grid Infrastructure Stealthily through Proxies (Final Technical Report)

The complex interdependencies of cyber systems (sensors and communications), physical grids and associated electricity market operations make protecting electric power grids a significant challenge. The energy sector is constantly under new, targeted, advanced and dangerous cyber-attacks that have the potential to result in the loss of human life. These threats are further exacerbated by our need to modernize the grid. One focus of cyber security research in smart grids is the securing of the SCADA system through advanced intrusion detection systems (IDS) and bad data detection algorithms in state estimation. These methods either require full knowledge of the system topology and parameters or fail to understand the physical behaviors under attack. WISP (Watching grid Infrastructure Stealthily through Proxies) is designed to provide additional protection to the power grid using only publicly available data. In particular, WISP exploits the spatio-temporal nature of the real time locational marginal prices (LMPs), in conjunction with other information such as bids, weather, outages and load data to analyze anomalous power pricing behaviors and then correlate those observations to localize regions of interest and identify potential cyber events. WISP is non-intrusive as the tool is deployed as a service in the Cloud or on premise and provides reliable information to system operators for enhanced situational awareness, without impeding energy delivery functions. The WISP technology comprises three modules: the data-driven anomaly detection core, the vulnerability and risk analysis and the root cause analysis. The data-driven anomaly detection core performs the tasks of feature selection, anomaly detection and attack region localization. The vulnerability and risk analysis module provides system level information of the vulnerable variables and times, assisting the operators in selecting monitoring and protection nodes. The root cause analysis module takes the detection results and identifies potential operational conditions that contribute to the detected anomalies. In Phase I, we have demonstrated the feasibility and effectiveness of WISP. We developed a realistic electricity market simulator capable of generating normal and attack market data under various operational conditions. We developed a series of cyber-attack detection and analysis algorithms and evaluated them under multiple data sources. Finally, we integrated all modules into an end-to-end software, providing functions for data management, data analytics and visualization. Specifically, we have achieved: (i) real-time data acceptance from external utility interfaces with >99% acceptance rate; (ii) high performance anomaly detection algorithms with >98% detection accuracy and <0.1% false alarm rate; and (iii) ultra-low computing delay <50 milliseconds. Additionally, our team developed algorithms to identify the vulnerable variables in electricity market operations and root cause analysis functions to identify major contributors to the price spikes. These ancillary modules are necessary when deploying WISP in real world industry environment. In Phase II, we have demonstrated the effectiveness of WISP software on realistic largescale power systems. We performed red team testing for the Phase I WISP software and identified software vulnerabilities and implemented corresponding mitigation solutions. We adapted the electricity market simulator for the Texas synthetic 2000-bus system and generated datasets for the false data injection attacks. We created database and visualization interfaces for the Texas system and the ISO New England system. We performed software optimization in terms of operation efficiency, computing speed and detection accuracy. Finally, we tested the software on the Texas system and the ISO New England system and evaluated the detection performance. Overall, we achieved above 89% detection rate, below 3% false alarm rate and below 37 seconds of end-to-end detection delay.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Methods for data reduction and loads analysis of Space Shuttle Solid Rocket Booster model water impact tests

The methodology used to predict full scale space shuttle solid rocket booster (SRB) water impact loads from scale model test data is described. Tests conducted included 12.5 inch and 120 inch diameter models of the SRB. Geometry and mass characteristics of the models were varied in each test series to reflect the current SRB baseline configuration. Nose first and tail first water entry modes were investigated with full-scale initial impact vertical velocities of 40 to 120 ft/sec, horizontal velocities of 0 to 60 ft/sec., and off-vertical angles of 0 to plus or minus 30 degrees. The test program included a series of tests with scaled atmospheric pressure.

Source record↗

Monitoring Composite Material Pressure Vessels with a Fiber-Optic/Microelectronic Sensor System

We discuss the concept of an integrated, fiber-optic/microelectronic distributed sensor system that can monitor composite material pressure vessels for Air Force space systems to provide assessments of the overall health and integrity of the vessel throughout its entire operating history from birth to end of life. The fiber optic component would include either a semiconductor light emitting diode or diode laser and a multiplexed fiber optic sensing network incorporating Bragg grating sensors capable of detecting internal temperature and strain. The microelectronic components include a power source, a pulsed laser driver, time domain data acquisition hardware, a microprocessor, a data storage device, and a communication interface. The sensing system would be incorporated within the composite during its manufacture. The microelectronic data acquisition and logging system would record the environmental conditions to which the vessel has been subjected to during its storage and transit, e.g., the history of thermal excursions, pressure loading data, the occurrence of mechanical impacts, the presence of changing internal strain due to aging, delamination, material decomposition, etc. Data would be maintained din non-volatile memory for subsequent readout through a microcomputer interface.

Klimcak, C.↗

Phenomenological modeling of hardening and thermal recovery in metals

Modeling of hardening and thermal recovery in metals is considered within the context of unified elastic-viscoplastic theories. Specifically, the choices of internal variables and hardening measures, and the resulting hardening response obtained by incorporating saturation-type evolution equations into two general forms of the flow law are examined. Based on the analytical considerations, a procedure for delineating directional and isotropic hardening from uniaxial hardening data has been developed for the Bodner-Partom model and applied to a nickel-base superalloy, B1900 + Hf. Predictions based on the directional hardening properties deduced from the monotonic loading data are shown to be in good agreement with results of cyclic tests.

Chan, K. S.↗

BuildingsBench: A Benchmark for Universal Building Load Forecasting [SWR-23-51]

The residential and commercial building stock in the United States is responsible for a significant percentage of energy consumption and greenhouse gas emissions. Electrification of end-uses, as well as decarbonizing the electrical grid through renewable energy sources such as solar and wind, constitutes the pathway to zero-emission buildings. Forecasting day-ahead building energy consumption is an integral part of this solution. Currently, specialized forecasting models are hand-made for each individual building, which is time-consuming, expensive, and leads to duplicated efforts. BuildingsBench is a Python software framework for training and comparing generalized machine learning models for universal building load forecasting. This challenge tasks a single foundational model to generalize its forecasts for a wide variety of buildings, across geographic regions, building types, weather patterns, and more. This software provide code for pre-training such models and subsequently evaluating their performance on a suite of hundreds of diverse real and synthetic buildings. BuildingsBench is a platform for: - Large-scale pretraining with the synthetic Buildings-900K dataset for short-term load forecasting (STLF). Buildings-900K is statistically representative of the entire U.S. building stock and is extracted from the NREL End-Use Load Profiles database. - Benchmarking on two tasks evaluating generalization: zero-shot STLF and transfer learning for STLF. We provide an index-based PyTorch Dataset for large-scale pretraining, easy data loading for multiple real building energy consumption datasets as PyTorch Tensors or Pandas DataFrames, simple (persistence) to advanced (transformer) baselines, metrics management, and more.

Emami, Patrick↗

Phase 1: Duke Energy Zero Emission Resource Integration Study (ZERIS); Phase 2: Carbon-Free Resource Integration Study for Duke Energy (Final Report)

Phase 1: This statement of work makes up Phase 1 of a larger effort. During this Phase 1 effort, NREL will work with Duke Energy to analyze the impacts of integrating significant amounts of new solar power into the Duke Energy power system under a variety of different penetrations scenarios, with a maximum of ten (10) full scenarios examined. The existing fleet, particularly the nuclear generation, will be considered in the quantitative assessments and discussions. Duke Energy is looking to quantify how much solar generation its system can handle. NREL will work with Duke Energy to quantify solar potential, identify likely integration challenges and possible opportunities for wind, storage, demand side resources and other technologies. Phase 2: This Statement of Work consists of a follow-up effort (Phase 2) to a recently completed Phase 1 modeling effort. During Phase 2, NREL will work closely with Duke Energy to analyze the impacts of integrating significant amounts of variable generation resources (wind and solar) and storage into Duke Energy's system in the Carolinas. The existing fleet, particularly nuclear generation, will be considered in the quantitative assessment and discussions. This Statement of Work also includes an extension to Phase II of the Carbon-Free Resource Integration Study for Duke Energy. In this extension, NREL will work closely with Duke Energy to extend the production cost analysis developed in Phase II to 2018 weather and load data for Duke Energy's territory. This extension leverages the modeling tools and datasets developed as part of Phase II. The analysis will compare results from Phase II (using 2012 weather and load) with 2018 results to assess system operations with increased penetration of renewables and storage. Simplifying assumptions will be made for modeling Duke Energy's neighbors in the production cost model.

14 SOLAR ENERGY↗

Filling the Gaps: The Synergistic Application of Satellite Data for the Volcanic Ash Threat to Aviation

Although significant progress has been made in recent years, estimating volcanic ash concentration for the full extent of the airspace affected by volcanic ash remains a challenge. No single satellite, airborne or ground observing system currently exists which can sufficiently inform dispersion models to provide the degree of accuracy required to use them with a high degree of confidence for routing aircraft in and near volcanic ash. Toward this end, the detection and characterization of volcanic ash in the atmosphere may be substantially improved by integrating a wider array of observing systems and advancements in trajectory and dispersion modeling to help solve this problem. The qualitative aspect of this effort has advanced significantly in the past decade due to the increase of highly complementary observational and model data currently available. Satellite observations, especially when coupled with trajectory and dispersion models can provide a very accurate picture of the 3-dimensional location of ash clouds. The accurate estimate of the mass loading at various locations throughout the entire plume, however improving, remains elusive. This paper examines the capabilities of various satellite observation systems and postulates that model-based volcanic ash concentration maps and forecasts might be significantly improved if the various extant satellite capabilities are used together with independent, accurate mass loading data from other observing systems available to calibrate (tune) ash concentration retrievals from the satellite systems.

Murray, John↗

TASTI-GRID: Improving Electric Grid Resilience across the State of Tennessee

Residential, industrial, and large load data center facility expansion have exacerbated management backlogs. Additionally, as newer technologies emerge in larger utility providers, a chasm between urban and rural resilience grows – creating segmentation across the state. With new development, industries, and large load additions to the electric grid across the Volunteer state, utilities must contend with these new connections, management backlogs, and technology gaps – while addressing an increase in major outages with more frequent extreme weather events, such as Hurricane Helene in 2024. This issues, in turn, have given way to greater vulnerabilities in adjacent infrastructure – including transportation and emergency management services, among others.

24 POWER TRANSMISSION AND DISTRIBUTION↗