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At least 181 records · Page 10

Efficient Capture and Release of the Rare-Earth Element Neodymium in Aqueous Solution by Recyclable Covalent Organic Frameworks

Rare-earth elements (REEs) are present in a broad range of critical materials. The development of solid adsorbents for REE capture could enable the cost-effective recycling of REE-containing magnets and electronics. In this context, covalent organic frameworks (COFs) are promising candidates for REE adsorption due to their exceptionally high surface area. Despite having attractive physical properties, COFs are heavily underutilized for REE capture applications due to their limited lifecycle in aqueous acidic environments, as well as synthetic challenges associated with the incorporation of ligands suitable for REE capture. Here, in this work, we show how the Ugi multicomponent reaction can be leveraged to postsynthetically modify imine-based COFs for the introduction of a diglycolic acid (DGA) moiety, an efficient scaffold for REE capture. The adsorption capacity of the DGA-functionalized COF was found to be more than 40 times higher than that of the pristine imine COF precursor and more than four times higher than that of the next-best reported DGA-functionalized solid support. This rationally designed COF has appealing characteristics of high adsorption capacity, fast and efficient capture and release of the REE ions, and reliable recyclability, making it one of the most promising adsorbents for solid–liquid REE ion extractions reported to date.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The evolution dynamical processes of Ural blocking through the lens of local finite-amplitude wave activity budget analysis

Understanding the formation and evolution mechanisms of Ural blocking (UB) is of great importance for the prediction of UB and relevant extremes in east Asia. Using the 6-hourly ERA-Interim reanalysis data, this study quantifies the conservative and nonconservative processes in the lifecycle of UB through the lens of the hybrid Eulerian-Lagrangian local finite-amplitude wave activity (LWA) diagnostics. It is found that (i) as a wave activity source, eddy heat flux works to not only initiate the UB, but also prevent the wave activity of the blocking from dispersing downstream---the key characteristic of blocking; (ii) both the wave propagation and wave advection mechanisms are indispensable for the evolution of UB, playing a tug-of-war on the downstream development of wave activity; (iii) Throughout the lifespan of UB, diabatic heating provides the most important damping mechanism for the wave activity both upstream and downstream; and (IV) irreversible PV mixing appears to compensate the eddy PV flux during the wave breaking stage of blocking.

Blocking, wave activity, eddy-mean flow interactio↗

Distinctive Signals in 1-min Observations of Overshooting Tops and Lightning Activity in a Severe Supercell Thunderstorm

This work examines a severe weather event that took place over central Argentina on December 11, 2018. The evolution of the storm from its initiation, rapid organization into a supercell, and eventual decay was analyzed with high-temporal resolution observations. This work provides insight into the spatio-temporal co-evolution of storm kinematics (updraft area and lifespan), cloud-top cooling rates, and lightning production that led to severe weather. The analyzed storm presented two convective periods with associated severe weather. An overall decrease in cloud-top local minima IR brightness temperature (MinIR10.3), increase in overshooting top area, and lightning jump (LJ) preceded both periods. LJs provided the highest lead time to the occurrence of severe weather, with the ground-based lightning networks providing the maximum warning time of around 30 min. Lightning flash counts from the Geostationary Lightning Mapper (GLM) were underestimated when compared to detections from ground-based lightning networks. Among the possible reasons for GLM’s lower detection efficiency were an optically dense medium located above lightning sources and the occurrence of flashes smaller than GLM’s footprint. The minimum MinIR provided the shorter warning time to severe weather occurrence. However, secondary minima in MinIR10.3 that preceded the absolute minima improved this warning time by more than 10 min. Furthermore, trends in MinIR10.3 for time scales shorter than 6 min revealed shorter cycles of fast cooling and warming, which provided information about the lifecycle of updrafts within the storm. The advantages of using observations with high-temporal resolution to analyze the evolution and intensity of convective storms are discussed.

54 ENVIRONMENTAL SCIENCES↗

Simulating the Effects of Surface Energy Partitioning on Convective Organization: Case Study and Observations in the US Southern Great Plains

Realistic cloud-resolving simulations were performed to study the effects of surface energy partitioning (surface sensible and latent heat fluxes) on the organization of isolated convection into larger mesoscale convective systems (MCSs) near the US Southern Great Plains. The role of cold pools in mediating surface-convection interactions was explored. Better organized MCSs tended to occur in the experiments with perturbed wetter soil (and more active vegetation), regardless of the effects of soil moisture on the diurnal timing of convective triggering. Wetter soil led to shallower boundary layers and more convective available potential energy than drier soil. The roles of cold pools on convection are lifecycle-stage dependent: A dry surface allows more numerous colliding cold pools, thereby aiding in convective triggering by reducing entrainment in the early stages, and providing gust-front uplift in later stages. However, horizontal propagation of the cold-pool density current can outrun the convective system, creating a slantwise updraft and thus weakening the gust front uplift in later stages. This effect calls into question previous cold pool parameterizations, in which the gust front uplift is mainly proportional to the negative buoyancy of cold air. Finally, both the model and observation show an enhancement of surface latent heat flux during the passage of a gust front at night, suggesting that a positive feedback between the surface and convection helps MCSs to persist into the nighttime.

54 ENVIRONMENTAL SCIENCES↗

Transition of Large-Scale Environmental Conditions and Characteristics of Four Rainfall Types Observed by S-PolKa During the MJO-1 Active Phase of DYNAMO/CINDY/AMIE

Analyses of National Center for Atmospheric Research (NCAR) S-PolKa dual-polarization radar data and ERA5 reanalysis fields indicate gradual changes in convection characteristics and large-scale environmental conditions during a central Indian Ocean Madden-Julian Oscillation (MJO) event observed by the DYNAMO/CINDY/AMIE field campaigns in late October 2011 (MJO-1). Examination of four rainfall types (isolated convective cores, convective, mixed, and stratiform) reveals a transition of convection characteristics (i.e., areal coverage and depth) between distinct 5-day environmental periods at the beginning and end of this ~2-week MJO active phase. A shift toward less frequent rainfall covering less of the radar domain for all four rainfall types occurs when large-scale lower-tropospheric dry air advects into the region with the westerly wind burst (WWB). Drier and warmer lower-free-tropospheric conditions associated with the WWB contribute to increased large-scale surface-based convective inhibition (CIN), surface-based convective available potential energy (CAPE), and cloud base heights. A thermodynamic budget analysis indicates reduced surface heat fluxes contribute to the increased surface-based CAPE. Greater CAPE at the end of MJO-1 coincides with deeper 50-dBZ convective echoes, while decreased 10-dBZ depth for all rainfall types corresponds in time with WWB-related dry-air advection. Increased (decreased) reflectivity values in the lower-level vertical reflectivity distribution of convective (stratiform) precipitation indicate increased (decreased) convective (stratiform) intensities when the WWB is present. The opposite depth changes for convective echoes and opposite shifts in convective and stratiform precipitation intensities underscore how the WWB can have differing impacts at different reflectivity thresholds and stages of the deep convection lifecycle.

54 ENVIRONMENTAL SCIENCES↗

Representations of Precipitation Diurnal Cycle in the Amazon as Simulated by Observationally Constrained Cloud‐System Resolving and Global Climate Models

Abstract The ability of an observationally‐constrained cloud‐system resolving model (Weather Research and Forecasting; WRF, 4‐km grid spacing) and a global climate model (Energy Exascale Earth System Model; E3SM, 1‐degree grid spacing) to represent the precipitation diurnal cycle over the Amazon basin during the 2014 wet season is assessed. The WRF model coupled with a 3‐D variational data assimilation scheme reproduces the spatial variability of the precipitation diurnal cycle over the basin and the lifecycle of westward propagating MCSs initiated by the coastal sea‐breeze front. In contrast, a single morning peak in rainfall is produced by E3SM for simulations despite the nudging of large‐scale winds toward global reanalysis, indicating precipitation in E3SM is largely controlled by local convection associated with diurnal heating. The role of propagating MCS on the environment are discussed by using a multivariate perturbation analysis. We also find that the advection of moisture perturbations from ocean to inland regions have a higher correlation with the occurrence of MCSs in the Amazon than the intensity of colder air intrusion associated with sea breezes along the coast. Moreover, the presence of large cold pools over the central Amazon basin are responsible for the maintenance of propagating deep convection.

54 ENVIRONMENTAL SCIENCES↗

The Role of Atmospheric Rivers on Groundwater: Lessons Learned From an Extreme Wet Year

Abstract In the coastal regions of the western United States, atmospheric rivers (ARs) are associated with the largest precipitation generating storms and contribute up to half of annual precipitation, but the impact of ARs on the integrated hydrologic cycle, specifically on groundwater storage and hydrodynamics, is largely unknown. To better explore the hydrologic behavior of AR versus non‐AR event precipitation, we present a novel combination of two water tracking methods (one in the atmosphere and one in the subsurface) to explicitly track the full lifecycle of water parcels generated by ARs. Simulations of northern California's Cosumnes River watershed during the record wet 2017 water year are performed via the coupling of a high‐resolution regional climate model and a land surface‐groundwater model accounting for lateral groundwater flow. Despite ARs contributing more precipitation than non‐AR storms, we find less AR water is preferentially stored in aquifers by year end. Fractionally, ARs result in 300% less snow derived groundwater‐recharged compared to non‐AR precipitation. Rain‐on‐snow (RoS) plays an important role in AR‐driven discharge, where over 50% of total discharge from ARs snow is from RoS events. Finally, despite record‐breaking annual precipitation, simulated groundwater depletion occurs by year end due to estimates of groundwater pumping activities. The results from these simulations serve as a partial analogue of future hydrologic conditions where ARs are expected to intensify and provide a greater fraction of annual precipitation due to climate change.

54 ENVIRONMENTAL SCIENCES↗

The Role of In-Cloud Wet Removal in Simulating Aerosol Vertical Profiles and Cloud Radiative Forcing

Among the physical processes controlling aerosol vertical profiles, in-cloud wet removal is of utmost importance while its representation in global climate models (GCMs) is crude. In this study, we implement into the Community Atmosphere Model version 6 (CAM6) a physically based aerosol wet removal parameterization scheme that explicitly treats aerosol activation, removal and resuspension. Evaluation against in-situ observations shows that the default scheme substantially overestimates the upper tropospheric black carbon (BC) and sea salt mass. Our physically based scheme reduces BC and sea salt mass by a factor of 10 and 1,000, respectively, in better agreement with observations. Also, the new scheme slightly increases number of aerosol particles between 12 nm and 4.8 μm in diameter, thereby mitigating the aerosol number underestimation in the default scheme. Our new scheme reduces the overestimation of coarse-mode aerosol (0.5–4.8 μm) number. Overall, the aerosol property changes (mass decrease and number increase) reduce the cloud condensation nuclei (CCN) concentration at low supersaturation (i.e., 0.02% and 0.1%), and increase CCN at high supersaturations (i.e., 0.5% and 1%). Consequently, the global annual mean cloud liquid water path increases by 1.89 g m -2 and the ice water path increases by 0.51 g m -2 . The global annual mean shortwave, longwave, and net cloud radiative forcing change by -1.06, 0.57, and -0.48 W m -2 , respectively. Further improvement is needed to reflect the real physics that the removal efficiencies for aerosol mass and number are disproportionate and to advect cloud-borne (activated) aerosols for a complete aerosol lifecycle.

54 ENVIRONMENTAL SCIENCES↗

Characterizing Wet Season Precipitation in the Central Amazon Using a Mesoscale Convective System Tracking Algorithm

To comprehensively characterize convective precipitation in the central Amazon region, we utilize the Python FLEXible object TRacKeR (PyFLEXTRKR) to track mesoscale convective systems (MCSs) observed through satellite measurements and simulated by the Weather Research and Forecasting model at a convection-permitting resolution. This study spans a 2-month period during the wet seasons of 2014 and 2015. We observe a strong correlation between the MCS track density and accumulated precipitation in the Amazon basin. Key factors contributing to precipitation, such as MCS properties (number, size, rainfall intensity, and movement), are thoroughly examined. Our analysis reveals that while the overall model produces fewer MCSs with smaller mean sizes compared to observations, it tends to overpredict total precipitation due to excessive rainfall intensity for heavy rainfall events (≥10 mm hr –1 ). These biases in simulated MCS properties could vary with the constraints on the convective background environment. Moreover, while the wet bias from heavy (convective) rainfall outweighs the dry bias in light (stratiform) rainfall, the latter can be crucial, particularly when MCS cloud cover is significantly underestimated. A case study for 1 April 2014 highlights the influence of environmental conditions on the MCS lifecycle and identifies an unrealistic model representation in both stratiform and convective precipitation features.

54 ENVIRONMENTAL SCIENCES↗

Evaluating Sea Breezes and Associated Convective Cloud Evolution in the Model Gray Zone

We characterize convective clouds associated with sea‐breeze circulations (SBC) using multi‐agency observations and multi‐case ensemble model simulations. The focus is on assessing convective cloud lifecycle properties and their merging behavior, as well as the environmental conditions they are embedded in, particularly SBC features. In total, 46 SBC days over the Houston‐Galveston region are selected and simulated using the Weather Research and Forecasting (WRF) model at a gray zone scale with a forecast‐like parameterization setup. Advanced techniques, including change‐point detection, a Lagrangian cloud tracking method, and a newly developed cell merging and splitting detection algorithm, are applied and/or developed for this study. Our findings indicate that the WRF model at 1 km grid spacing well represents the thermodynamic conditions over the region, as well as SBC timing and intensity. However, for the associated convective cells, WRF overestimates the 30‐dBZ echo top height, cell area, and maximum radar reflectivity compared to radar observations. This overestimation is potentially due to under‐resolved entrainment processes, an overestimated merging frequency, and the overestimation of updraft intensity. Furthermore, the model exhibits a deficiency in simulating congestus clouds, showing a more rapid transition from shallow to deep convection compared to observed behavior. Moreover, observations indicate stronger, deeper, and wider clouds when merging happens. Conversely, in simulations, the merging process does not necessarily lead to higher or longer‐lived cells, as many cases experience rapid and frequent merging and splitting which may result in more variance in convective updraft velocity during the convection lifetime.

54 ENVIRONMENTAL SCIENCES↗

Advancing Organized Convection Representation in the Unified Model: Implementing and Enhancing Multiscale Coherent Structure Parameterization

To address the effect of stratiform latent heating on meso- to large-scale circulations, an enhanced implementation of the Multiscale Coherent Structure Parameterization (MCSP) is developed for the Met Office Unified Model. MCSP represents the top-heavy stratiform latent heating from under-resolved organized convection in general circulation models. We couple the MCSP with a mass-flux convection scheme (CoMorph-A) to improve storm lifecycle continuity. The improved MCSP trigger is specifically designed for mixed-phase deep convective cloud, combined with a background vertical wind shear, both known to be crucial for stratiform development. We also test a cloud top temperature dependent convective-stratiform heating partitioning, in contrast to the earlier fixed partitioning. Assessments from ensemble weather forecasts and decadal simulations demonstrate that MCSP directly reduces cloud deepening and precipitation areas by moderating mesoscale circulations. Indirectly, it amends tropical precipitation biases, notably correcting dry and wet biases over India and the Indian Ocean, respectively. Remarkably, the scheme outperforms a climate model ensemble by improving seasonal precipitation cycle predictions in these regions. The scheme also improves Madden-Julian Oscillation (MJO) spectra, achieving better alignment with observational and reanalysis data by intensifying the simulated MJO over the Indian Ocean during phases 4 to 5. However, the scheme increases precipitation overestimation over the Western Pacific. Shifting from fixed to temperature-dependent convective-stratiform partitioning reduces the Pacific precipitation overestimation and further improves the seasonal cycle in India. Spatially correlated biases highlight the necessity for advances beyond deterministic approaches to align MCSP with environmental conditions.

54 ENVIRONMENTAL SCIENCES↗

A functional map of HIV-host interactions in primary human T cells

Human Immunodeficiency Virus (HIV) relies on host molecular machinery for replication. Systematic attempts to genetically or biochemically define these host factors have yielded hundreds of candidates, but few have been functionally validated in primary cells. Here, we target 426 genes previously implicated in the HIV lifecycle through protein interaction studies for CRISPR-Cas9-mediated knock-out in primary human CD4+ T cells in order to systematically assess their functional roles in HIV replication. We achieve efficient knockout (>50% of alleles) in 364 of the targeted genes and identify 86 candidate host factors that alter HIV infection. 47 of these factors validate by multiplex gene editing in independent donors, including 23 factors with restrictive activity. Both gene editing efficiencies and HIV-1 phenotypes are highly concordant among independent donors. Importantly, over half of these factors have not been previously described to play a functional role in HIV replication, providing numerous novel avenues for understanding HIV biology. These data further suggest that host-pathogen protein-protein interaction datasets offer an enriched source of candidates for functional host factor discovery and provide an improved understanding of the mechanics of HIV replication in primary T cells.

60 APPLIED LIFE SCIENCES↗

The obligate intracellular bacterium Orientia tsutsugamushi differentiates into a developmentally distinct extracellular state

Orientia tsutsugamushi (Ot) is an obligate intracellular bacterium in the family Rickettsiaceae that causes scrub typhus, a severe mite-borne human disease. Its mechanism of cell exit is unusual amongst Rickettsiaceae, as Ot buds off the surface of infected cells enveloped in plasma membrane. Here, we show that Ot bacteria that have budded out of host cells are in a distinct developmental stage compared with intracellular bacteria. We refer to these two stages as intracellular and extracellular bacteria (IB and EB, respectively). These two forms differ in physical properties: IB is both round and elongated, and EB is round. Additionally, IB has higher levels of peptidoglycan and is physically robust compared with EB. The two bacterial forms differentially express proteins involved in bacterial physiology and host-pathogen interactions, specifically those involved in bacterial dormancy and stress response, and outer membrane autotransporter proteins ScaA and ScaC. Whilst both populations are infectious, entry of IB Ot is sensitive to inhibitors of both clathrin-mediated endocytosis and macropinocytosis, whereas entry of EB Ot is only sensitive to a macropinocytosis inhibitor. Our identification and detailed characterization of two developmental forms of Ot significantly advances our understanding of the intracellular lifecycle of an important human pathogen.

59 BASIC BIOLOGICAL SCIENCES↗

Circular olefin copolymers made de novo from ethylene and α-olefins

Ethylene/α-olefin copolymers are produced in huge scale and widely used, but their after-use disposal has caused plastic pollution problems. Their chemical inertness made chemical re/upcycling difficult. Ideally, PE materials should be made de novo to have a circular closed-loop lifecycle. However, synthesis of circular ethylene/α-olefin copolymers, including high-volume, linear low-density PE as well as high-value olefin elastomers and block copolymers, presents a particular challenge due to difficulties in introducing branches while simultaneously installing chemical recyclability and directly using industrial ethylene and α-olefin feedstocks. Here we show that coupling of industrial coordination copolymerization of ethylene and α-olefins with a designed functionalized chain-transfer agent, followed by modular assembly of the resulting AB telechelic polyolefin building blocks by polycondensation, affords a series of ester-linked PE-based copolymers. These new materials not only retain thermomechanical properties of PE-based materials but also exhibit full chemical circularity via simple transesterification and markedly enhanced adhesion to polar surfaces.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Phosphorylation toggles the SARS-CoV-2 nucleocapsid protein between two membrane-associated condensate states

Abstract The Nucleocapsid protein (N) of SARS-CoV-2 plays a critical role in the viral lifecycle by regulating RNA replication and by packaging the viral genome. N and RNA phase separate to form condensates that may be important for these functions. Both functions occur at membrane surfaces, but how N toggles between these two membrane-associated functional states is unclear. Here, we reveal that phosphorylation switches how N condensates interact with membranes, in part by modulating condensate material properties. Our studies also show that phosphorylation alters N’s interaction with viral membrane proteins. We gain mechanistic insight through structural analysis and molecular simulations, which suggest phosphorylation induces a conformational change in N that softens condensate material properties. Together, our findings identify membrane association as a key feature of N condensates and provide mechanistic insights into the regulatory role of phosphorylation. Understanding this mechanism suggests potential therapeutic targets for COVID infection.

Science & Technology - Other Topics↗

Producing Performance-Advantaged Bioplastics

A grand challenge for bio-based plastics is the ability to cost-effectively manufacture high-performance polymers directly from renewable resources that are also recyclable-by-design. A one-step conversion of xylose to polyesters has been reported, combining a sustainable lifecycle with impressive materials performance.

biomass feedstock↗

WorkflowHub: a registry for computational workflows

The rising popularity of computational workflows is driven by the need for repetitive and scalable data processing, sharing of processing know-how, and transparent methods. As both combined records of analysis and descriptions of processing steps, workflows should be reproducible, reusable, adaptable, and available. Workflow sharing presents opportunities to reduce unnecessary reinvention, promote reuse, increase access to best practice analyses for non-experts, and increase productivity. In reality, workflows are scattered and difficult to find, in part due to the diversity of available workflow engines and ecosystems, and because workflow sharing is not yet part of research practice. WorkflowHub provides a unified registry for all computational workflows that links to community repositories, and supports both the workflow lifecycle and making workflows findable, accessible, interoperable, and reusable (FAIR). By interoperating with diverse platforms, services, and external registries, WorkflowHub adds value by supporting workflow sharing, explicitly assigning credit, enhancing FAIRness, and promoting workflows as scholarly artefacts. The registry has a global reach, with hundreds of research organisations involved, and more than 800 workflows registered.

97 MATHEMATICS AND COMPUTING↗

Morphologically-Directed Raman Spectroscopy as an Analytical Method for Subvisible Particle Characterization in Therapeutic Protein Product Quality

Abstract Subvisible particles (SVPs) are a critical quality attribute of injectable therapeutic proteins (TPs) that needs to be controlled due to potential risks associated with drug product quality. The current compendial methods routinely used to analyze SVPs for lot release provide information on particle size and count. However, chemical identification of individual particles is also important to address root-cause analysis. Herein, we introduce Morphologically-Directed Raman Spectroscopy (MDRS) for SVP characterization of TPs. The following particles were used for method development: (1) polystyrene microspheres, a traditional standard used in industry; (2) photolithographic (SU-8); and (3) ethylene tetrafluoroethylene (ETFE) particles, candidate reference materials developed by NIST. In our study, MDRS rendered high-resolution images for the ETFE particles (> 90%) ranging from 19 to 100 μm in size, covering most of SVP range, and generated comparable morphology data to flow imaging microscopy. Our method was applied to characterize particles formed in stressed TPs and was able to chemically identify individual particles using Raman spectroscopy. MDRS was able to compare morphology and transparency properties of proteinaceous particles with reference materials. The data suggests MDRS may complement the current TPs SVP analysis system and product quality characterization workflow throughout development and commercial lifecycle.

Science & Technology - Other Topics↗