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At least 181 records · Page 10

Large-scale homogeneity in the distribution of quasars in the Hercules-Corona Borealis Great Wall region

In light of recent debates on the existence of a gigaparsec-scale structure traced by gamma-ray bursts, namely the Hercules-Corona Borealis Great Wall (HCBGW), we revisit large-scale homogeneity in the spatial distribution of quasars. Our volume-limited sample of quasars in the redshift range 1:6 < z ≤ 2:1, which is constructed from the data release 7 of the Sloan Digital Sky Survey quasar catalogue, covers about half of the suspected HCBGW region. We analyze the sample in two complementary ways: fractal analysis of determining the average scale of homogeneity and friends- of-friends analysis of identifying specific large-scale structures. The quasar distribution on average reaches homogeneity at rh = 136 ± 38h-1 Mpc and the richness and comoving size frequencies of large (> ~ 150h-1 Mpc) quasar groups are consistent with the prediction of homogeneous distribution. These results put constraints on the spatial extent of the HCBGW but do not contradict its existence since our quasar sample does not cover the entire HCBGW region.

79 ASTRONOMY AND ASTROPHYSICS↗

Dynamical Large Deviations of Two-Dimensional Kinetically Constrained Models Using a Neural-Network State Ansatz

We use a neural-network ansatz originally designed for the variational optimization of quantum systems to study dynamical large deviations in classical ones. We use recurrent neural networks to describe the large deviations of the dynamical activity of model glasses, kinetically constrained models in two dimensions. We present the first finite size-scaling analysis of the large-deviation functions of the two-dimensional Fredrickson-Andersen model, and explore the spatial structure of the high-activity sector of the South-or-East model. These results provide a new route to the study of dynamical large-deviation functions, and highlight the broad applicability of the neural-network state ansatz across domains in physics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Investigation of Cycle-to-Cycle Variations in Internal Combustion Engine Using Proper Orthogonal Decomposition

The understanding, modeling and control of the cycle-to-cycle variation (CCV) in the modern internal combustion engine (ICE) is a key scientific challenge to achieve stable engine operation. High CCV in the engine combustion chamber may contribute to partial burn, misfire and knock, which adversely affects the engine performance and may potentially damage the engine. The objective of the current study is to leverage high-fidelity numerical simulations to improve the understanding of the causes of CCV. Using the massively parallel code, Nek5000, multi-cycle, wall-resolved large-eddy simulations (LES) were performed for the General Motors (GM), Transparent Combustion Chamber (TCC-III) optical engine under motored operating conditions. Further, the large-scale structures of the in-cylinder flow were investigated using a triple proper orthogonal decomposition (POD) technique to explore the characteristics of different parts of the flow and their contributions to CCV. The kinetic energy of the subset of flow structures were determined and correlated between the intake and compression strokes. The insights from the analysis of the large-scale flow structures will be used to assist the development of improved engine designs with reduced CCV and enhance the engine performance.

33 ADVANCED PROPULSION SYSTEMS↗

WISE-PS1-STRM: neural network source classification and photometric redshifts for WISE×PS1

ABSTRACT We cross-match between the WISE All-Sky and PS1 3π DR2 source catalogues. The resulting catalogue has 354 590 570 objects, significantly fewer than the parent PS1 catalogue, but its combination of optical and infrared colours facilitate both better source classification and photometric redshift estimation. We perform a neural network-based classification of the objects into galaxies, quasars, and stars, then run neural network-based photometric redshift estimation for the galaxies. The star sample purity and quasar sample completeness measures improve substantially, and the resulting photo-z’s are significantly more accurate in terms of statistical scatter and bias than those calculated from PS1 properties alone. The catalogue will be a basis for future large-scale structure studies, and will be made available as a high-level science product via the Mikulski Archive for Space Telescopes.

79 ASTRONOMY AND ASTROPHYSICS↗

Computational and numerical analysis of AC optimal power flow formulations on large-scale power grids

We report that alternating current optimal power flow (AC-OPF) is a fundamental tool in electric utilities to determine optimal operation of the various resources. Typically, the AC-OPF problem uses power balance formulation containing voltages and power equations. Yet, there is no comprehensive comparison of the different AC-OPF formulations, especially for large-scale networks. This paper presents a detailed comparative evaluation of different formulations of the AC-OPF problem on networks ranging from 9-bus to 25,000 buses. Three different formulations: 1) power balance with polar voltages, 2) power balance with Cartesian voltages, and 3) current balance with Cartesian voltages are discussed in detail by comparing their characteristics, and numerical and computational performance.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Supporting Co-Design of Extreme-Scale Systems with In Situ Visual Analysis of Event-Driven Simulations (Final Report)

Extreme-scale systems for compute- and data-centric science are pushing the boundaries of system architectures in order to achieve ambitious goals in terms of computing capability, resilience, and power efficiency. Future systems necessitate emerging designs that incorporate new technologies, system organizations, and computer science techniques, and these changes are not yet well understood. Discrete-event-driven simulation of computing system architectures and subsystems has emerged as a productive and cost-effective means to evaluating potential designs, along with capabilities for executing these simulations of extreme-scale systems. However, techniques for analyzing the behavior of these simulations have not kept pace with our ability to perform the simulations, preventing us from extracting the most value from this promising approach. The objective of this project is to support the codesign of extreme-scale system architectures for compute and data-centric science through research and development of novel methods for analysis and visualization of large-scale event-driven simulations.

97 MATHEMATICS AND COMPUTING↗

Performance Analysis and Optimization for Scientific Data Workloads

Scientific data generated at experimental and observational facilities are increasingly being processed on large-scale compute systems. Most of the experimental data analysis workflows are not designed or implemented to run on large scale environments and take full advantage of HPC compute and storage resources. These applications are unlike the traditional tightly-coupled scientific applications and hence face significant performance and scalability challenges as the volume of data increases exponentially. In this paper, we conduct a performance and scalability analysis for experimental analysis applications and workflows operating on data from light sources. Our analysis detects and quantifies I/O performance, scalability and runtime bottlenecks for three data analysis applications that run on NERSC resources. Based on our analysis we propose and implement a set of optimizations that lead to reducing the amount of time spent on I/O operations by almost 90%.

97 MATHEMATICS AND COMPUTING↗

Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups

Abstract Deltaproteobacteria, now proposed to be the phyla Desulfobacterota, Myxococcota, and SAR324, are ubiquitous in marine environments and play essential roles in global carbon, sulfur, and nutrient cycling. Despite their importance, our understanding of these bacteria is biased towards cultured organisms. Here we address this gap by compiling a genomic catalog of 1 792 genomes, including 402 newly reconstructed and characterized metagenome-assembled genomes (MAGs) from coastal and deep-sea sediments. Phylogenomic analyses reveal that many of these novel MAGs are uncultured representatives of Myxococcota and Desulfobacterota that are understudied. To better characterize Deltaproteobacteria diversity, metabolism, and ecology, we clustered ~1 500 genomes based on the presence/absence patterns of their protein families. Protein content analysis coupled with large-scale metabolic reconstructions separates eight genomic clusters of Deltaproteobacteria with unique metabolic profiles. While these eight clusters largely correspond to phylogeny, there are exceptions where more distantly related organisms appear to have similar ecological roles and closely related organisms have distinct protein content. Our analyses have identified previously unrecognized roles in the cycling of methylamines and denitrification among uncultured Deltaproteobacteria. This new view of Deltaproteobacteria diversity expands our understanding of these dominant bacteria and highlights metabolic abilities across diverse taxa.

Langwig, Marguerite V. (ORCID:0000000202472816)↗

A MeerKAT-meets-LOFAR study of MS 1455.0 + 2232: a 590 kiloparsec ‘mini’-halo in a sloshing cool-core cluster

ABSTRACT Radio mini-haloes are poorly understood, moderately extended diffuse radio sources that trace the presence of magnetic fields and relativistic electrons on scales of hundreds of kiloparsecs, predominantly in relaxed clusters. With relatively few confirmed detections to-date, many questions remain unanswered. This paper presents new radio observations of the galaxy cluster MS 1455.0+2232 performed with MeerKAT (covering the frequency range 872−1712 MHz) and LOFAR (covering 120−168 MHz), the first results from a homogeneously selected mini-halo census. We find that this mini-halo extends for ∼590 kpc at 1283 MHz, significantly larger than previously believed, and has a flatter spectral index (α = −0.97 ± 0.05) than typically expected. Our X-ray analysis clearly reveals a large-scale (254 kpc) sloshing spiral in the intracluster medium. We perform a point-to-point analysis, finding a tight single correlation between radio and X-ray surface brightness with a super-linear slope of $b_{\rm 1283\, MHz} = 1.16^{+0.06}_{-0.07}$ and $b_{\rm 145\, MHz} = 1.15^{+0.09}_{-0.08}$; this indicates a strong link between the thermal and non-thermal components of the intracluster medium. Conversely, in the spectral index/X-ray surface brightness plane, we find that regions inside and outside the sloshing spiral follow different correlations. We find compelling evidence for multiple sub-components in this mini-halo for the first time. While both the turbulent (re-)acceleration and hadronic scenarios are able to explain some observed properties of the mini-halo in MS 1455.0+2232, neither scenario is able to account for all the evidence presented by our analysis.

79 ASTRONOMY AND ASTROPHYSICS↗

Different Spatiotemporal Patterns in Global Human Population and Built‐Up Land

Abstract Population concentration and built‐up land expansion are two prominent features of contemporary urbanization. Existing literature on the population aspect of urbanization has mostly focused on national and regional aggregates, and literature on the land development aspect has often relied on spatial case studies of individual cities or their meta‐analyses. Using newly‐available data, here we conduct the first global‐coverage, spatial analysis of the relationship between (changes in) population and built‐up land at multiple spatial scales, and compare to existing common beliefs about urbanization based on individual city studies. We find that population and built‐up land show distinctly different spatial and temporal patterns (with a global correlation coefficient around 0.6). Contrary to common impressions, our results show that during recent decades, developed and developing regions across the world experienced comparable amounts of built‐up land expansion. While meta‐analyses have reported that built‐up land in urban areas expands globally on average twice as fast as population grows, our results show the global change rates of built‐up land and population are similar. Also, most global population, including what national statistics agencies call urban population, reside in areas with low land development levels (which are frequently less than 5% built up). These changes in perspective suggest that urbanization's potential large‐scale impacts may need to be re‐evaluated, and lead to best‐practice recommendations for urbanization modeling and analysis. Especially, the common practice in large‐scale earth system modeling of assuming demographically‐defined urban population resides in areas with medium to high built‐up land development levels should change.

Gao, Jing↗

A Global Increase in Nearshore Tropical Cyclone Intensification

Abstract Tropical Cyclones (TCs) inflict substantial coastal damages, making it pertinent to understand changing storm characteristics in the important nearshore region. Past work examined several aspects of TCs relevant for impacts in coastal regions. However, few studies explored nearshore storm intensification and its response to climate change at the global scale. Here, we address this using a suite of observations and numerical model simulations. Over the historical period 1979–2020, observations reveal a global mean TC intensification rate increase of about 3 kt per 24‐hr in regions close to the coast. Analysis of the observed large‐scale environment shows that stronger decreases in vertical wind shear and larger increases in relative humidity relative to the open oceans are responsible. Further, high‐resolution climate model simulations suggest that nearshore TC intensification will continue to rise under global warming. Idealized numerical experiments with an intermediate complexity model reveal that decreasing shear near coastlines, driven by amplified warming in the upper troposphere and changes in heating patterns, is the major pathway for these projected increases in nearshore TC intensification.

54 ENVIRONMENTAL SCIENCES↗

Multi-scale Analysis of Surface Heterogeneity Induced Convection on Isentropic Coordinates

This research uses semi-idealized simulations to investigate multi-scale processes induced by the heterogeneity of soil moisture observed during the 2016 Holistic Interactions of Shallow Clouds, Aerosols, and Land-Ecosystems (HI-SCALE) field campaign. The semi-idealized simulations have realistic land heterogeneity, but large-scale winds are removed. Analysis on isentropic coordinates enables the tracking of circulation that transports energy vertically and facilitates the identification of the primary convective processes induced by realistic land heterogeneity. The isentropes associated with upward motion are found to connect the ground characterized by high latent heat flux to cloud bases directly over the ground with high sensible heat flux, while isentropes associated with downward motion connect precipitation to the ground characterized by high sensible heat fluxes. The mixing of dry, warm parcels ascending from the ground with high sensible heat fluxes and moist parcels from high latent heat regions leads to cloud formation. This new mechanism explains how soil moisture heterogeneity provides the key ingredients such as buoyancy and moisture for shallow cloud formation. We also found that the sub-mesoscale dominates upward energy transport in the boundary layer, while mesoscale circulations contribute to vertical energy transport above the boundary layer. Our novel method better illustrates and elucidates the nature of land atmospheric interactions under irregular and realistic soil moisture patterns.

54 ENVIRONMENTAL SCIENCES↗

Defining upstream enhancing and inhibiting sequence patterns for plant peroxisome targeting signal type 1 using large–scale in silico and in vivo analyses

Peroxisomes are universal eukaryotic organelles essential to plants and animals. Most peroxisomal matrix proteins carry peroxisome targeting signal type 1 (PTS1), a C-terminal tripeptide. Studies from various kingdoms have revealed influences from sequence upstream of the tripeptide on peroxisome targeting, supporting the view that positive charges in the upstream region are the major enhancing elements. However, a systematic approach to better define the upstream elements influencing PTS1 targeting capability is needed. Here, we used protein sequences from 177 plant genomes to perform large-scale and in-depth analysis of the PTS1 domain, which includes the PTS1 tripeptide and upstream sequence elements. We identified and verified 12 low-frequency PTS1 tripeptides and revealed upstream enhancing and inhibiting sequence patterns for peroxisome targeting, which were subsequently validated in vivo. Follow-up analysis revealed that nonpolar and acidic residues have relatively strong enhancing and inhibiting effects, respectively, on peroxisome targeting. However, in contrast to the previous understanding, positive charges alone do not show the anticipated enhancing effect and that both the position and property of the residues within these patterns are important for peroxisome targeting. We further demonstrated that the three residues immediately upstream of the tripeptide are the core influencers, with a ‘basic-nonpolar-basic’ pattern serving as a strong and universal enhancing pattern for peroxisome targeting. These findings have significantly advanced our knowledge of the PTS1 domain in plants and likely other eukaryotic species as well. The principles and strategies employed in the present study may also be applied to deciphering auxiliary targeting signals for other organelles.

59 BASIC BIOLOGICAL SCIENCES↗

ROSE

Developed at Lawrence Livermore National Laboratory (LLNL), ROSE is an open source compiler infrastructure to build source-to-source program transformation and analysis tools for large-scale C (C89 to C23), C++ (C++98 to C++23), UPC, Fortran (Fortran4, 66, 77, 95, 2003), OpenMP, Java, Python, and Binary applications. ROSE users range from experienced compiler researchers to library and tool developers who may have minimal compiler experience. ROSE is particularly well suited for building custom tools for static analysis, program optimization, arbitrary program transformation, domain-specific optimizations, complex loop optimizations, performance analysis, and cyber-security. ROSE is: A library (and set of associated tools) to quickly and easily apply compiler techniques to one's code in order to improve application performance and developer productivity. A research and development compiler infrastructure for for writing custom source-to-source translators to perform source code transformations, analysis, and optimizations. Is

Pinnow, NathanT [Lawrence Livermore National Labor↗

An implementation of neural simulation-based inference for parameter estimation in ATLAS

Neural simulation-based inference (NSBI) is a powerful class of machine-learning-based methods for statistical inference that naturally handles high-dimensional parameter estimation without the need to bin data into low-dimensional summary histograms. Such methods are promising for a range of measurements, including at the Large Hadron Collider, where no single observable may be optimal to scan over the entire theoretical phase space under consideration, or where binning data into histograms could result in a loss of sensitivity. This work develops a NSBI framework for statistical inference, using neural networks to estimate probability density ratios, which enables the application to a full-scale analysis. It incorporates a large number of systematic uncertainties, quantifies the uncertainty due to the finite number of events in training samples, develops a method to construct confidence intervals, and demonstrates a series of intermediate diagnostic checks that can be performed to validate the robustness of the method. As an example, the power and feasibility of the method are assessed on simulated data for a simplified version of an off-shell Higgs boson couplings measurement in the four-lepton final states. This approach represents an extension to the standard statistical methodology used by the experiments at the Large Hadron Collider, and can benefit many physics analyses.

frequentist statistics↗