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At least 181 records · Page 10

Mechanistic Insights into Co and Fe Quaterpyridine-Based CO 2 Reduction Catalysts: Metal–Ligand Orbital Interaction as the Key Driving Force for Distinct Pathways

Both [Co II (qpy)(H 2 O) 2 ] 2+ and [Fe II (qpy)(H 2 O) 2 ] 2+ (with qpy = 2,2':6',2'':6'',2'''-quaterpyridine) are efficient homogeneous electrocatalysts and photoelectrocatalysts for the reduction of CO 2 to CO. The Co catalyst is more efficient in the electrochemical reduction, while the Fe catalyst is an excellent photoelectrocatalyst. This work uses density functional theory to shed light on the contrasting catalytic pathways. While both catalysts experience primarily ligand-based reductions, the second reduction in the Co catalyst is delocalized onto the metal via a metal-ligand bonding interaction, causing a spin transition and a distorted ligand framework. This orbital interaction explains the experimentally observed mild reduction potential and slow kinetics of the second reduction. The decreased hardness and doubly occupied d z 2 -orbital facilitate a σ-bond with the CO 2 -π* in an η 1 - κC binding mode. CO 2 binding is only possible after two reductions resulting in an EEC mechanism (E = electron transfer, C = chemical reaction), and the second protonation is rate-limiting. In contrast, the Fe catalyst maintains a Lewis acidic metal center throughout the reduction process because the metal orbitals do not strongly mix with the qpy-π* orbitals. Further, this allows binding of the activated CO 2 in an η 2 -binding mode. This interaction stabilizes the activated CO 2 via a π-type interaction of a Fe-t 2g orbital and the CO 2 -π* and a dative bond of the oxygen lone pair. This facilitates CO 2 binding to a singly reduced catalyst resulting in an ECE mechanism. The barrier for CO 2 addition and the second protonation are higher than those for the Co catalyst and rate-limiting.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Wide range of possible trajectories of North Atlantic climate in a warming world

Decadal variability in the North Atlantic Ocean impacts regional and global climate, yet changes in internal decadal variability under anthropogenic radiative forcing remain largely unexplored. Here we use the Community Earth System Model 2 Large Ensemble under historical and the Shared Socioeconomic Pathway 3-7.0 future radiative forcing scenarios and show that the ensemble spread in northern North Atlantic sea surface temperature (SST) more than doubles during the mid-twenty-first century, highlighting an exceptionally wide range of possible climate states. Furthermore, there are strikingly distinct trajectories in these SSTs, arising from differences in the North Atlantic deep convection among ensemble members starting by 2030. We propose that these are stochastically triggered and subsequently amplified by positive feedbacks involving coupled ocean-atmosphere-sea ice interactions. Freshwater forcing associated with global warming seems necessary for activating these feedbacks, accentuating the impact of external forcing on internal variability. Further investigation on seven additional large ensembles affirms the robustness of our findings. By monitoring these mechanisms in real time and extending dynamical model predictions after positive feedbacks activate, we may achieve skillful long-lead North Atlantic decadal predictions that are effective for multiple decades.

54 ENVIRONMENTAL SCIENCES↗

Aerosol-Water Cycle Interaction: A New Challenge in Monsoon Climate Research

Long recognized as a major environmental hazard, aerosol is now known to have strong impacts on both regional and global climate. It has been estimated that aerosol may reduce by up to 10% of the seasonal mean solar radiation reaching the earth surface, producing a global cooling effect that opposes global warming (Climate Change 2001). This means that the potential perils that humans have committed to global warming may be far greater than what we can detect at the present. As a key component of the Earth climate system, the water cycle is profoundly affected by the presence of aerosols in the atmosphere. Through the so-called direct effect , aerosol scatters and/or absorbs solar radiation, thus cooling the earth surface and changing the horizontal and vertical radiational heating contrast in the atmosphere. The heating contrast drives anomalous atmospheric circulation, resulting in changes in convection, clouds, and rainfall. Another way aerosol can affect the water cycle is through the so-called indirect effects, whereby aerosol increases the number of cloud condensation nuclei, prolongs life time of clouds, and inhibits the growth of cloud drops to raindrops. This leads to more clouds, and increased reflection of solar radiation, and further cooling at the earth surface. In monsoon regions, the response of the water cycle to aerosol forcing is especially complex, not only because of presence of diverse mix of aerosol species with vastly different radiative properties, but also because the monsoon is strongly influenced by ocean and land surface processes, land use, land change, as well as regional and global greenhouse warming effects. Thus, sorting out the impacts of aerosol forcing, and interaction with the monsoon water cycle is a very challenging problem. In this talk, I will offer some insights into how aerosols may impact the Asian monsoon based on preliminary results from satellite observations and climate model experiments. Specifically, I will discuss the elevated heat pump hypothesis, involving atmospheric heating by absorbing aerosols (dust and black carbon) over the southern slopes of the Himalayas, and feedback with the deep convection, in modifying monsoon water cycle over South .and East Asia. The role of aerosol forcing relative to those due to sea surface temperature and land surface processes, as well as observation requirements to verify such a hypothesis will also be discussed.

Lau, William K. M.↗

Aerosol-Water Cycle Interaction: A New Challenge in Monsoon Climate Research

Long recognized as a major environmental hazard, aerosol is now known to have strong impacts on both regional and global climate. It has been estimated that aerosol may reduce by up to 10% of the seasonal mean solar radiation reaching the earth surface, producing a global cooling effect that opposes global warming (Climate Change 2001). This means that the potential perils that humans have committed to global warming may be far greater than what we can detect at the present. As a key component of the Earth climate system, the water cycle is profoundly affected by the presence of aerosols in the atmosphere. Through the so-called "direct effect", aerosol scatters and/or absorbs solar radiation, thus cooling the earth surface and changing the horizontal and vertical radiational heating contrast in the atmosphere. The heating contrast drives anomalous atmospheric circulation, resulting in changes in convection, clouds, and rainfall. Another way aerosol can affect the water cycle is through the so-called "indirect effects", whereby aerosol increases the number of cloud condensation nuclei, prolongs life time of clouds, and inhibits the growth of cloud drops to raindrops. This leads to more clouds, and increased reflection of solar radiation, and further cooling at the earth surface. In monsoon regions, the response of the water cycle to aerosol forcing is especially complex, not only because of presence of diverse mix of aerosol species with vastly different radiative properties, but also because the monsoon is strongly influenced by ocean and land surface processes, land use, land change, as well as regional and global greenhouse warming effects. Thus, sorting out the impacts of aerosol forcing, and interaction with the monsoon water cycle is a very challenging problem. In this talk, I will offer some insights into how aerosols may impact the Asian monsoon based on preliminary results from satellite observations and climate model experiments. Specifically, I will discuss the "elevated heat pump" hypothesis, involving atmospheric heating by absorbing aerosols (dust and black carbon) over the southern slopes of the Himalayas, and feedback with the deep convection, in modifying monsoon water cycle over South and East Asia. The role of aerosol forcing relative to those due to sea surface temperature and land surface processes, as well as observation requirements to verify such a hypothesis will also be discussed.

Lau, William K. M.↗

Propulsion Aeroelastic Analysis Developed for Flutter and Forced Response

The NASA Glenn Research Center at Lewis Field develops new technologies to increase the fuel efficiency of aircraft engines, improve the safety of engine operation, reduce emissions, and reduce engine noise. With the development of new designs for fans, compressors, and turbines to achieve these goals, the basic aeroelastic requirements are that there should be no flutter (self-excited vibrations) or high resonant blade stresses (due to forced response) in the operating regime. Therefore, an accurate prediction and analysis capability is required to verify the aeroelastic soundness of the designs. Such a three-dimensional viscous propulsion aeroelastic analysis capability has been developed at Glenn with support from the Advanced Subsonic Technology (AST) program. This newly developed aeroelastic analysis capability is based on TURBO, a threedimensional unsteady aerodynamic Reynolds-averaged Navier-Stokes turbomachinery code developed previously under a grant from Glenn. TURBO can model the viscous flow effects that play an important role in certain aeroelastic problems such as flutter with flow separation, flutter at high loading conditions near the stall line (stall flutter), flutter in the presence of shock and boundary-layer interaction, and forced response due to wakes and shock impingement. In aeroelastic analysis, the structural dynamics representation of the blades is based on normal modes. A finite-element analysis code is used to calculate these in-vacuum vibration modes and the associated natural frequencies. In an aeroelastic analysis using the TURBO code, flutter and forced response are modeled as being uncoupled. To calculate if a blade row will flutter, one prescribes the motion of the blade to be a harmonic vibration in a specified in-vacuum normal mode. An aeroelastic analysis preprocessor is used to generate the displacement field required for the analysis. The work done by aerodynamic forces on the vibrating blade during a cycle of vibration is calculated. If this work is positive, the blade is dynamically unstable, since it will extract energy from the flow, leading to an increase in the blade s oscillation amplitude. The forced-response excitations on a blade row are calculated by modeling the flow through two adjacent blade rows using the TURBO code. The blades are assumed to be rigid. As an option, a single blade row can be modeled with the upstream blade row influence represented by a time-varying disturbance (gust) at the inlet boundary. The unsteady forces on a blade row from such analyses are used in a structural analysis along with the blade structural dynamics characteristics and aerodynamic damping associated with blade vibration to calculate the resulting dynamic stresses on the blade.

Bakhle, Milind A.↗

Quasilinear theory: the lost ponderomotive effects and why they matter

Quasilinear theory (QLT) has been used for modeling wave–plasma interactions for decades but remains largely heuristic. Plasma inhomogeneity, ponderomotive effects, microscopic fluctuations, and collisions are not easily accommodated from first principles in QLT, and typically are ignored entirely, due to the limitations of the standard Fourier–Laplace global-mode approach. This results in inconsistencies, for example, violation of the action conservation for nonresonant waves. However, these issues can be avoided, and the theory can be substantially generalized and corrected, if QLT is formulated using more suitable analytical tools, particularly, the Weyl symbol calculus. Here, an attempt is made to deliver an accessible review of this modern formulation, provide intuitive calculations for special cases, and elaborate on the connection with the ‘oscillation-center QLT’ originally proposed by Dewar (Phys Fluids 16:1102, 1973). A Fokker–Planck equation for a ‘dressed’ distribution is derived from the Klimontovich equation and captures quasilinear diffusion, ponderomotive forces, and interactions with background fields for a generic Hamiltonian, so many known formulations of QLT for specific plasma models become corollaries of a single unifying theory. Also, waves are allowed to be off-shell (not constrained by a dispersion relation), which allows them to accommodate microscopic fluctuations. This leads to a collision integral of the Balescu–Lenard type that has all the usual properties but is not restricted to any specific plasma model. For on-shell waves, a generalized version of the classic oscillation-center QLT is obtained. Finally, combined with the wave-kinetic equation, this formulation not only conserves particles, momentum, and energy, like the classic QLT but also reinstates the action conservation for nonresonant waves.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Experimental and computational investigation of interactive flow induced oscillations of two tandem rough cylinders at 3×10 4 ≤Re≤1.2×10 5

The interactive flow induced oscillations (FIO) of two adjacent, elastically mounted, rigid, tandem, locally-rough cylinders in transverse flow direction are analyzed utilizing two-dimensional Unsteady Reynolds-Averaged Navier-Stokes (2-D URANS) equations and verified experimentally in the proximity-wake region. Three sets of experiments and simulations (K = 600N/m, ζ = 0.14; K = 600N/m, ζ = 0.26; K = 1,200N/m, ζ = 0.26; K is spring stiffness, ζ is damping ratio) of two tandem cylinders with turbulence stimulation are tested and simulated for Reynolds number in the range of 30,000 = Re ≤ 120,000. The reduced velocity range is U* = 2.48–14.22, the mass ratio is m* = 1.343, and the center-to-center in-flow spacing to diameter ratio is d/D = 2.57. The characteristics of amplitude response, frequency response, lift force, and interactive wake patterns are presented and discussed. The trends of the amplitude and frequency responses from numerical simulations are in good agreement with experimental results. The main conclusions of Reynolds number effect on interactive flow induced oscillations are: (1) Five significant flow patterns between two tandem locally-rough cylinders for different Reynolds numbers are observed through analyzing the complex but stable interactions between vortices and cylinders. (2) In the initial and upper VIV branches, the downstream cylinder's FIO is seriously interfered by the wake of the upstream cylinder. (3) The downstream cylinder is strongly impinged by the vortices shed from the upstream cylinder resulting in nearly 180O out-of-phase oscillations in transition from VIV to galloping and in-phase oscillations in galloping.

42 ENGINEERING↗

Simulations of Cloud-Radiation Interaction Using Large-Scale Forcing Derived from the CINDY/DYNAMO Northern Sounding Array

The recently completed CINDY/DYNAMO field campaign observed two Madden-Julian oscillation (MJO) events in the equatorial Indian Ocean from October to December 2011. Prior work has indicated that the moist static energy anomalies in these events grew and were sustained to a significant extent by radiative feedbacks. We present here a study of radiative fluxes and clouds in a set of cloud-resolving simulations of these MJO events. The simulations are driven by the large-scale forcing data set derived from the DYNAMO northern sounding array observations, and carried out in a doubly periodic domain using the Weather Research and Forecasting (WRF) model. Simulated cloud properties and radiative fluxes are compared to those derived from the S-PolKa radar and satellite observations. To accommodate the uncertainty in simulated cloud microphysics, a number of single-moment (1M) and double-moment (2M) microphysical schemes in the WRF model are tested. The 1M schemes tend to underestimate radiative flux anomalies in the active phases of the MJO events, while the 2M schemes perform better, but can overestimate radiative flux anomalies. All the tested microphysics schemes exhibit biases in the shapes of the histograms of radiative fluxes and radar reflectivity. Histograms of radiative fluxes and brightness temperature indicate that radiative biases are not evenly distributed; the most significant bias occurs in rainy areas with OLR less than 150 W/ cu sq in the 2M schemes. Analysis of simulated radar reflectivities indicates that this radiative flux uncertainty is closely related to the simulated stratiform cloud coverage. Single-moment schemes underestimate stratiform cloudiness by a factor of 2, whereas 2M schemes simulate much more stratiform cloud.

Indian Ocean↗

Axion strings are superconducting

We explore the cosmological consequences of the superconductivity of QCD axion strings. Axion strings can support a sizeable chiral electric current and charge density, which alters their early universe dynamics. We examine the possibility that shrinking axion string loops can become effectively stable remnants called vortons, supported by the repulsive electromagnetic force of the string current. We find that vortons in our scenario are generically unstable, and so do not pose a cosmological difficulty. Furthermore, if a primordial magnetic field (PMF) exists in the early universe, a large current is induced on axion strings, creating a significant drag force from interactions with the surrounding plasma. As a result, the strings are slowed down, which leads to an orders of magnitude enhancement in the number of strings per Hubble volume. Finally, we study potential implications for the QCD axion relic abundance. The QCD axion window is shifted by orders of magnitude in some parts of our parameter space.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Modeling the Impact of the Organic Aerosol Phase State on Multiphase OH Reactive Uptake Kinetics and the Resultant Heterogeneous Oxidation Timescale of Organic Aerosol in the Amazon Rainforest

Accurate predictions of chemical lifetime, i.e., oxidation timescale and change in the mass of organic aerosols (OAs) in atmospheric models, are critical to quantify the impacts of OA on aerosol–cloud interactions, radiative forcing, and air quality. The heterogeneous oxidation of OA by hydroxyl (OH) radicals is a key process governing OA mass changes during their oxidation. Recently, laboratory observations of the OH uptake coefficient (γ OH ) and heterogeneous reaction rate (k het,OH ) for different OA systems with varying phase states have been combined to develop a new parameterization of γ OH and k het,OH as a function of the OA phase state, i.e., viscosity (η OA ). Here, in this work, we use a recently published viscosity prediction framework to analyze the new γ OH and k het,OH parameterization with a box model. Subsequently, we implement this box model to predict γ OH and k het,OH over the Amazon rainforest in the dry-to-wet transition season with both significant biomass burning and biogenic influences. Relevant parameters within our box model are specified based on detailed regional model simulations over the Amazon using the Weather Research and Forecasting model coupled with Chemistry (WRF-Chem). η OA is predicted as a function of species volatility, OA composition (including water uptake) along with ambient relative humidity (RH), and temperature. Based on ambient conditions simulated by WRF-Chem over the entire atmospheric column, we use the box model to predict the upper bounds of the heterogeneous oxidation timescale of OA. Based on previous laboratory measurements, we assume that this heterogeneous OH oxidation causes fragmentation (carbon loss) of OA, followed by the evaporation of the fragmented molecules that results in the exponential decay of OA. We predict that the oxidation timescale of OA is ~1 month near the Earth’s surface in the pristine Amazonian background because of low OH concentrations. But OA is oxidized more rapidly within urban and wildfire plumes near the Earth’s surface with an order of magnitude higher OH concentrations compared to the pristine background, causing the simulated oxidation timescale of OA to be much shorter, ~3–4 days. At 3–5 km altitudes where biomass burning OA is predicted to be semisolid, the heterogeneous oxidation timescale is estimated as ~6 days to 3 weeks and decreases with increasing OH concentrations within plumes. We show that the simulated mass loss of OA is strongly size-dependent, where smaller particles oxidize more rapidly compared to larger particles due to their greater per-particle surface area-to-volume ratio. Increasing urbanization and deforestation in the Amazon in the future might increase OH concentrations in the background Amazon, causing faster oxidation of OA. At higher altitudes above liquid clouds, especially in the upper troposphere where temperatures approach ~250 K, future measurements are needed to reduce the uncertainties related to the mass loss of OA at colder temperatures and low relative humidity conditions due to its heterogeneous OH oxidation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Sensitivity of Grass Fires Burning in Marginal Conditions to Atmospheric Turbulence

Abstract Atmospheric forcing and interactions between the fire and atmosphere are primary drivers of wildland fire behavior. The atmosphere is known to be a chaotic system that, although deterministic, is very sensitive to small perturbations to initial conditions. We assume that as a result of the tight coupling between fire and atmosphere; wildland fire behavior, in turn, should also be sensitive to perturbations in atmospheric initial conditions. Observations suggest that low intensity prescribed fire, in particular, is susceptible to small perturbations in the wind field, which can significantly alter fire spread. Here, we employ a computational fluid dynamics model of coupled fire‐atmosphere interactions to answer the question: How sensitive is fire behavior to small variations in atmospheric turbulence? We perform ensemble simulations of fires in homogenous grass fuels. The only difference between ensemble members is the state of the turbulent atmosphere provided to the model throughout the simulation. The atmospheric state is a function of the initial conditions applied at the start of the simulation and boundary conditions applied throughout the simulation. We find a wide range of outcomes, with area burned ranging from 2,212 to 11,236 m 2 (>400% change), driven primarily by sensitivity to initial conditions, with nonnegligible contributions from boundary condition variability during the initial 30 s of simulation. Our results highlight the need for ensemble simulations, especially when considering fire behavior in marginal burning conditions.

54 ENVIRONMENTAL SCIENCES↗

Realism of Lagrangian Large Eddy Simulations Driven by Reanalysis Meteorology: Tracking a Pocket of Open Cells Under a Biomass Burning Aerosol Layer

An approach to drive Lagrangian large eddy simulation (LES) of boundary layer clouds with reanalysis data is presented and evaluated using satellite (Spinning Enhanced Visible and Infrared Imager, SEVIRI) and aircraft (Cloud-Aerosol-Radiation Interactions and Forcing, CLARIFY) measurements. The simulations follow trajectories of the boundary layer flow. They track the formation and evolution of a pocket of open cells (POC) underneath a biomass burning aerosol layer in the free troposphere. The simulations reproduce the evolution of observed stratocumulus cloud morphology, cloud optical depth, and cloud drop effective radius, and capture the timing of the cloud state transition from closed to open cells seen in the satellite imagery on the three considered trajectories. They reproduce a biomass burning aerosol layer identified by the in-situ aircraft measurements above the inversion of the POC. Entrainment of aerosol from the biomass burning layer into the POC is limited to the extent of having no impact on cloud- or boundary layer properties, in agreement with the CLARIFY observations. The two-moment bin microphysics scheme used in the simulations reproduces the in-situ cloud microphysical properties reasonably well. A two-moment bulk microphysics scheme reproduces the satellite observations in the non-precipitating closed-cell state, but overestimates liquid water path and cloud optical depth in the precipitating open-cell state due to insufficient surface precipitation. A boundary layer cold and dry bias occurring in LES can be counteracted by reducing the grid aspect ratio and by tightening the large scale wind speed nudging towards the surface.

54 ENVIRONMENTAL SCIENCES↗

Model Sensitivities of Biomass-Burning Aerosol Chemical Aging, Sulfate Formation, and Cloud Droplet Activation in the Southeastern Atlantic Using CESM and E3SM

Biomass-burning smoke drives large uncertainty in climate projections of the Earth's radiative balance. This is due to the chemical and physical evolution of smoke and its impact on clouds and radiation. Here we focus on the southeastern Atlantic region and its inflow of African biomass-burning smoke during August 2017. We evaluate smoke properties and processes in two coupled earth-system models, the Energy Exascale Earth System Model (E3SM) and Community Earth System Model (CESM). These are compared against in situ aircraft observations from two field campaigns, ObseRvations of Aerosols above CLouds and their intEractionS (ORACLES) and CLoud–Aerosol–Radiation Interaction and Forcing: Year 2017 (CLARIFY-2017). Observations reveal an increase and subsequent decrease in smoke mean diameter, and a steady decrease in the mass ratio of organic aerosol (OA) to black carbon aerosol (BC) (OA:BC) over 4–12 days of aging, neither captured by the base models. Implementation of a photolytic loss scheme for secondary organic aerosol (SOA)—as a proxy for other heterogeneous volatilization chemistry—and a ∼1-day conversion for primary OA to SOA significantly improves the representation of this loss. In the boundary layer, both models show dimethyl sulfide driving a large increase in the sulfate aerosol mass fraction from the free troposphere, which is consistent with observations. Finally, models tend to underpredict cloud droplet number concentration partially due to weak modeled turbulent updraft strength, and model performance improves when the parameterized turbulent updraft strength is increased substantially. These results are expected to provide insights into future model development to reduce climate model uncertainties.

54 ENVIRONMENTAL SCIENCES↗

Study of the doubly charmed tetraquark $\mathrm{T}$ $^+_{cc}$

Quantum chromodynamics, the theory of the strong force, describes interactions of coloured quarks and gluons and the formation of hadronic matter. Conventional hadronic matter consists of baryons and mesons made of three quarks and quark-antiquark pairs, respectively. Particles with an alternative quark content are known as exotic states. Here a study is reported of an exotic narrow state in the D 0 D 0 π + mass spectrum just below the D *+ D 0 mass threshold produced in proton-proton collisions collected with the LHCb detector at the Large Hadron Collider. The state is consistent with the ground isoscalar T$^{+}_{cc}$ tetraquark with a quark content of cc$\bar{u}\bar{d}$ and spin-parity quantum numbers J P = 1 + . Study of the DD mass spectra disfavours interpretation of the resonance as the isovector state. The decay structure via intermediate off-shell D *+ mesons is consistent with the observed D 0 π+ mass distribution. To analyse the mass of the resonance and its coupling to the D*D system, a dedicated model is developed under the assumption of an isoscalar axial-vector T$^{+}_{cc}$ state decaying to the D*D channel. Using this model, resonance parameters including the pole position, scattering length, effective range and compositeness are determined to reveal important information about the nature of the T$^{+}_{cc}$ state. In addition, an unexpected dependence of the production rate on track multiplicity is observed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Quantum bath augmented stochastic nonequilibrium atomistic simulations for molecular heat conduction

Classical molecular dynamics (MD) has been shown to be effective in simulating heat conduction in certain molecular junctions since it inherently takes into account some essential methodological components which are lacking in the quantum Landauer-type transport model, such as many-body full force-field interactions, anharmonicity effects and nonlinear responses for large temperature biases. However, the classical MD reaches its limit in the environments where the quantum effects are significant (e.g. with low-temperatures substrates, presence of extremely high frequency molecular modes). Here, we present an atomistic simulation methodology for molecular heat conduction that incorporates the quantum Bose–Einstein statistics into an “effective temperature” in the form of a modified Langevin equation. We show that the results from such a quasi-classical effective temperature MD method deviates drastically when the baths temperature approaches zero from classical MD simulations and the results converge to the classical ones when the bath approaches the high-temperature limit, which makes the method suitable for full temperature range. In addition, we show that our quasi-classical thermal transport method can be used to model the conducting substrate layout and molecular composition (e.g. anharmonicities, high-frequency modes). Anharmonic models are explicitly simulated via the Morse potential and compared to pure harmonic interactions to show the effects of anharmonicities under quantum colored bath setups. Finally, the chain length dependence of heat conduction is examined for one-dimensional polymer chains placed in between quantum augmented baths.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray–derived conformational ensembles

How enzymes achieve their enormous rate enhancements remains a central question in biology, and our understanding to date has impacted drug development, influenced enzyme design, and deepened our appreciation of evolutionary processes. While enzymes position catalytic and reactant groups in active sites, physics requires that atoms undergo constant motion. Numerous proposals have invoked positioning or motions as central for enzyme function, but a scarcity of experimental data has limited our understanding of positioning and motion, their relative importance, and their changes through the enzyme’s reaction cycle. To examine positioning and motions and test catalytic proposals, we collected “room temperature” X-ray crystallography data for Pseudomonas putida ketosteroid isomerase (KSI), and we obtained conformational ensembles for this and a homologous KSI from multiple PDB crystal structures. Here, ensemble analyses indicated limited change through KSI’s reaction cycle. Active site positioning was on the 1- to 1.5-Å scale, and was not exceptional compared to noncatalytic groups. The KSI ensembles provided evidence against catalytic proposals invoking oxyanion hole geometric discrimination between the ground state and transition state or highly precise general base positioning. Instead, increasing or decreasing positioning of KSI’s general base reduced catalysis, suggesting optimized Ångstrom-scale conformational heterogeneity that allows KSI to efficiently catalyze multiple reaction steps. Ensemble analyses of surrounding groups for WT and mutant KSIs provided insights into the forces and interactions that allow and limit active-site motions. Most generally, this ensemble perspective extends traditional structure–function relationships, providing the basis for a new era of “ensemble–function” interrogation of enzymes.

59 BASIC BIOLOGICAL SCIENCES↗

Design and Analyses of the NSTX-U PF1A Poloidal Field Coil Support

New poloidal field (PF) coils and supports have been designed for the National Spherical Torus Experiment Upgrade (NSTX-U) Recovery project. The PF1A coil structural requirements demand a large preload to pre-compress the coil insulation. Coil support design accounts for all operational conditions and loads of NSTX-U including bakeout, seismic events, and electromagnetic loads. Background magnetic fields produce coil Lorentz forces that react on the structural supports. These Lorentz forces include interactions from the coil current and all plasma events: normal operations, disruptions, and vertical displacement events. This paper will detail the design and design loads and highlight some of the analyses.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗