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At least 181 records · Page 10

GAtor: A First-Principles Genetic Algorithm for Molecular Crystal Structure Prediction

We present the implementation of GAtor, a massively parallel, first-principles genetic algorithm (GA) for molecular crystal structure prediction. GAtor is written in Python and currently interfaces with the FHI-aims code to perform local optimizations and energy evaluations using dispersion-inclusive density functional theory (DFT). GAtor offers a variety of fitness evaluation, selection, crossover, and mutation schemes. Breeding operators designed specifically for molecular crystals provide a balance between exploration and exploitation. Evolutionary niching is implemented in GAtor by using machine learning to cluster the dynamically updated population by structural similarity and then employing a cluster-based fitness function. Evolutionary niching promotes uniform sampling of the potential energy surface by evolving several subpopulations, which helps overcome initial pool biases and selection biases (genetic drift). The various settings offered by GAtor increase the likelihood of locating numerous low-energy minima, including those located in disconnected, hard to reach regions of the potential energy landscape. The best structures generated are re-relaxed and re ranked using a hierarchy of increasingly accurate DFT functionals and dispersion methods. GAtor is applied to a chemically diverse set of four past blind test targets, characterized by different types of intermolecular interactions. Furthermore, the experimentally observed structures and other low-energy structures are found for all four targets. In particular, for Target II, 5-cyano-3-hydroxythiophene, the top ranked putative crystal structure is a Z' = 2 structure with PT symmetry and a scaffold packing motif, which has not been reported previously.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Optimizing Fast Charging and Wetting in Lithium-Ion Batteries with Optimal Microstructure Patterns Identified by Genetic Algorithm

To sustain the high-rate current required for fast charging electric vehicle batteries, electrodes must exhibit sufficiently high effective ionic diffusion. Additionally, to reduce battery manufacturing costs, wetting time must decrease. Both of these issues can be addressed by structuring the electrodes with mesoscale pore channels. However, their optimal spatial distribution, or patterns, is unknown. Herein, a genetic algorithm has been developed to identify these optimal patterns using a CPU-cheap proxy distance-based model to evaluate the impact of the added pore networks. Both coin-cell and pouch cell form factors have been considered for the wetting analysis, with their respective electrolyte infiltration mode. Regular hexagonal and mud-crack-like patterns, respectively, for fast charging and fast wetting were found to be optimal and have been compared with pre-determined, easier to manufacture, patterns. The model predicts that using cylindrical channels arranged in a regular hexagonal pattern is ∼6.25 times more efficient for fast charging as compared to grooved lines with both structuring strategies being restricted to a 5% electrode total volume loss. The model also shows that only a very limited electrode volume loss (1%–2%) is required to dramatically improve the wetting (5–20 times) compared to an unstructured electrode.

25 ENERGY STORAGE↗

A genetic algorithm for first principles global structure optimization of supported nano structures

We present a newly developed publicly available genetic algorithm (GA) for global structure optimisation within atomic scale modeling. The GA is focused on optimizations using first principles calculations, but it works equally well with empirical potentials. The implementation is described and benchmarked through a detailed statistical analysis employing averages across many independent runs of the GA. This analysis focuses on the practical use of GA’s with a description of optimal parameters to use. New results for the adsorption of M{sub 8} clusters (M = Ru, Rh, Pd, Ag, Pt, Au) on the stoichiometric rutile TiO{sub 2}(110) surface are presented showing the power of automated structure prediction and highlighting the diversity of metal cluster geometries at the atomic scale.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Statistical Analysis of CO 2 Exposed Wells to Predict Long Term Leakage through the Development of an Integrated Neural-Genetic Algorithm

The objective of this project is to develop a computerized statistical model with the Integrated Neural-Genetic Algorithm (INGA) for predicting the probability of long-term leak of wells in CO 2 sequestration operations. This object has been accomplished by conducting research in three phases: 1) data mining of CO 2 -explosed wells, 2) INGA computer model development, and 3) evaluation of the predictive performance of the computer model with data from field tests. Data mining was conducted for 510 wells in two CO 2 sequestration projects in the Texas Gulf Coast region. They are the Hasting West field and Oyster Bayou field in the Southern Texas. Missing wellbore integrity data were estimated using an analytical and Finite Element Method (FEM) model. The INGA was first tested for performances of convergence and computing efficiency with the obtained data set of high dimension. It was concluded that the INGA can handle the gathered data set with good accuracy and reasonable computing time after a reduction of dimension with a grouping mechanism. A computerized statistical model with the INGA was then developed based on data pre-processing and grouping. Comprehensive training and testing of the model were carried out to ensure that the model is accurate and efficient enough for predicting the probability of long-term leak of wells in CO 2 sequestration operations. The Cranfield in the southern Mississippi was select as the test site. Observation wells CFU31F2 and CFU31F3 were used for pressure-testing, formation-logging, and cement-sampling. Tools run in the wells include Isolation Scanner, Slim Cement Mapping Tool (SCMT), Cased Hole Formation Dynamics Tester (CHDT), and Mechanical Sidewall Coring Tool (MSCT). Analyses of the obtained data indicate no leak of CO 2 cross the cap zone while it is evident that the well cement sheath was invaded by the CO 2 from the storage zone. This observation is consistent with the result predicted by the INGA model which indicates the well has a CO 2 leak-safe probability of 72%. This comparison implies that the developed INGA model is valid for future use in predicting well leak probability.

97 MATHEMATICS AND COMPUTING↗

Experience with a Genetic Algorithm Implemented on a Multiprocessor Computer

Numerical experiments were conducted to find out the extent to which a Genetic Algorithm (GA) may benefit from a multiprocessor implementation, considering, on one hand, that analyses of individual designs in a population are independent of each other so that they may be executed concurrently on separate processors, and, on the other hand, that there are some operations in a GA that cannot be so distributed. The algorithm experimented with was based on a gaussian distribution rather than bit exchange in the GA reproductive mechanism, and the test case was a hub frame structure of up to 1080 design variables. The experimentation engaging up to 128 processors confirmed expectations of radical elapsed time reductions comparing to a conventional single processor implementation. It also demonstrated that the time spent in the non-distributable parts of the algorithm and the attendant cross-processor communication may have a very detrimental effect on the efficient utilization of the multiprocessor machine and on the number of processors that can be used effectively in a concurrent manner. Three techniques were devised and tested to mitigate that effect, resulting in efficiency increasing to exceed 99 percent.

Plassman, Gerald E.↗

Experience with a Genetic Algorithm Implemented on a Multiprocessor Computer

Numerical experiments were conducted to find out the extent to which a Genetic Algorithm (GA) may benefit from a multiprocessor implementation, considering, on one hand, that analyses of individual designs in a population are independent of each other so that they may be executed concurrently on separate processors, and, on the other hand, that there are some operations in a GA that cannot be so distributed. The algorithm experimented with was based on a gaussian distribution rather than bit exchange in the GA reproductive mechanism, and the test case was a hub frame structure of up to 1080 design variables. The experimentation engaging up to 128 processors confirmed expectations of radical elapsed time reductions comparing to a conventional single processor implementation. It also demonstrated that the time spent in the non-distributable parts of the algorithm and the attendant cross-processor communication may have a very detrimental effect on the efficient utilization of the multiprocessor machine and on the number of processors that can be used effectively in a concurrent manner. Three techniques were devised and tested to mitigate that effect, resulting in efficiency increasing to exceed 99 percent.

Plassman, Gerald E.↗

GAAF: Searching Activation Functions for Binary Neural Networks Through Genetic Algorithm

Binary neural networks (BNNs) show promising utilization in cost and power-restricted domains such as edge devices and mobile systems. This is due to its significantly less computation and storage demand, but at the cost of degraded performance. To close the accuracy gap, in this paper we propose to add a complementary activation function (AF) ahead of the sign based binarization, and rely on the genetic algorithm (GA) to automatically search for the ideal AFs. These AFs can help extract extra information from the input data in the forward pass, while allowing improved gradient approximation in the backward pass. Fifteen novel AFs are identified through our GA-based search, while most of them show improved performance (up to 2.54% on ImageNet) when testing on different datasets and network models. Interestingly, periodic functions are identified as a key component for most of the discovered AFs, which rarely exist in human designed AFs. Our method offers a novel approach for designing general and application-specific BNN architecture.

59 BASIC BIOLOGICAL SCIENCES↗

Comprehensive Efficiency Analysis of Seven-Switch Current-Source Inverter Based on Voltage-Boost Function and Genetic Algorithm

This paper investigates the voltage-boost features of the emerging seven-switch current-source inverter (H7-CSI) to improve the efficiency of the CSI-based motor drive system. The switching transient and power loss model of the H7-CSI topology during voltage-boost operation are analyzed in detail. The effects of the boost function on the switching and conduction loss of the H7-CSI topology are investigated. A genetic algorithm has been introduced that makes it possible to optimize the H7-CSI’s modulation index to minimize its power loss. Experimental results for the H7-CSI unit show that this optimization can reduce the power loss by 10.6%.

42 ENGINEERING↗

Small bimetallic clusters Agn-1M (M = Au, Co, Cu, Ni, Pd, Pt; n = 3, 9, 15): Density functional theory and genetic algorithm

We investigated the effect of size and composition on the properties of bimetallic nanoclusters. The geometric structures, stabilities, and electronic properties of size-selected Ag n-1 M (M = Au, Co, Cu, Ni, Pd, Pt; n = 3, 9, 15) bimetallic nanoclusters are systematically analyzed using spin-polarized density functional theory (DFT) within the generalized gradient approximation (GGA). We determine the most stable geometries for these clusters using a genetic algorithm (GA) in combination with DFT. Our results show that doping pure silver clusters with an M atom (transition metal), referred to as a “guest atom”, increases the stability as compared to pure Ag n (n = 3, 9, 15) clusters. The results for various properties including formation energy per atom, electronic structure, magnetic moments, and vibrational density of states (VDOS) are evaluated as a function of both size and composition of the system. The adsorption of selected bimetallic clusters on hydroxylated alumina substrate shows weak binding and minor changes in geometric properties except for Ag 8 Pt.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Multi-objective optimization of a PCHE-type intermediate heat exchanger using genetic algorithms

For the advanced nuclear reactor systems and power conversion units, it is important to optimize the design of intermediate heat exchangers (IHXs) which transfer heat from the primary loop to the secondary or intermediate loop. For a multi-objective optimization problem, a printed circuit heat exchanger-type IHX with zigzag and S-shaped fin channels is selected to be optimized in terms of both the total cost and the heat exchanger thermal effectiveness using genetic algorithms. A computer code is developed to search a set of optimized designs of the zigzag channel geometry. It is found that among the Pareto-optimal solutions, the total cost is approximately linearly related to the thermal effectiveness between 88 and 95% while it rises rapidly after the effectiveness exceeds 95%. An optimal flow channel diameter is also determined through the optimization. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

New approach based on group technology for the consolidation problem in cloud computing-mathematical model and genetic algorithm

Resource management is a hotspot issue in distributed systems like cloud computing (CC). It means how to prepare the computational resources, i.e., servers and virtual machines (VMS), to execute the tasks. This paper offers a new approach based on Group Technology (GT)—known as a powerful philosophy for the resource management in cellular manufacturing systems—to deal with the resource management problem in CC. We develop a mathematical model to optimally consolidate the VMs, servers and tasks simultaneously to control several important factors such as task migrations and server load variation, as well as the number of VMs. To test the validity of our proposed model, several small problems are generated randomly and solved by LINGO 9 software. Furthermore, to cope with larger problems, which cannot be solved optimally, a genetic algorithm is proposed. We, finally, compare our methods with the most well-known algorithms in this context, round robin (RR) and first-come, first-served (FCFS) algorithms.

97 MATHEMATICS AND COMPUTING↗

In silico discovery of metal-organic frameworks for precombustion CO 2 capture using a genetic algorithm

Discovery of new adsorbent materials with a high CO 2 working capacity could help reduce CO 2 emissions from newly commissioned power plants using precombustion carbon capture. High-throughput computational screening efforts can accelerate the discovery of new adsorbents but sometimes require significant computational resources to explore the large space of possible materials. Here in this paper we report the in silico discovery of high-performing adsorbents for precombustion CO 2 capture by applying a genetic algorithm to efficiently search a large database of metal-organic frameworks (MOFs) for top candidates. High-performing MOFs identified from the in silico search were synthesized and activated and show a high CO 2 working capacity and a high CO 2 /H 2 selectivity. One of the synthesized MOFs shows a higher CO 2 working capacity than any MOF reported in the literature under the operating conditions investigated here.

36 MATERIALS SCIENCE↗

Optimization of groundwater artificial recharge systems using a genetic algorithm: a case study in Beijing, China

An optimization approach is used for the operation of groundwater artificial recharge systems in an alluvial fan in Beijing, China. The optimization model incorporates a transient groundwater flow model, which allows for simulation of the groundwater response to artificial recharge. The facilities’ operation with regard to recharge rates is formulated as a nonlinear programming problem to maximize the volume of surface water recharged into the aquifers under specific constraints. This optimization problem is solved by the parallel genetic algorithm (PGA) based on OpenMP, which could substantially reduce the computation time. To solve the PGA with constraints, the multiplicative penalty method is applied. In addition, the facilities’ locations are implicitly determined on the basis of the results of the recharge-rate optimizations. Two scenarios are optimized and the optimal results indicate that the amount of water recharged into the aquifers will increase without exceeding the upper limits of the groundwater levels. Optimal operation of this artificial recharge system can also contribute to the more effective recovery of the groundwater storage capacity.

58 GEOSCIENCES↗

Comprehensive Efficiency Analysis of Current Source Inverter Based on CSI-Type Double Pulse Test and Genetic Algorithm

A current-source inverter (CSI) has a natural output voltage boost feature that can be advantageous for traction applications. Switching frequency is one of the easily-controlled variables that can be adjusted to improve the CSI efficiency at different operating points when the boost function is used. This paper investigates a CSI-based double-pulse test (DPT) measurement that mimics normal operation of the CSI. A loss model of the CSI is developed based on the CSI-type DPT experimental results. The impacts of the switching frequency and voltage boost ratio on the CSI efficiency and output voltage ripple are investigated. Based on the loss model, a genetic algorithm has been introduced that makes it possible to optimize the CSI's switching frequency and modulation index to maximize its efficiency under any desired operating condition.

current-source inverter, genetic algorithm, SPM ma↗

Structures and stabilities of alkaline earth metal peroxides XO2 (X=Ca, Be, Mg) studied by a genetic algorithm

The structures and stabilities of alkaline earth metal peroxides XO2 (X = Ca, Be, Mg) were studied using an adaptive genetic algorithm (GA) for global structure optimization in combination with first-principles calculations. From the adaptive GA search, we obtained an orthorhombic structure for CaO2 with 12 atoms in the unit cell, which is energetically more favorable than the previously proposed structures. Reaction energy of the decomposition CaO2 → CaO + 1/2O2 determined by density functional theory (DFT) calculation shows that this orthorhombic calcium peroxide structure is thermodynamically stable. The simulated X-ray diffraction (XRD) pattern using our predicted structure is in excellent agreement with experimental data. We also show that crystal phase BeO2 is unlikely to exist under normal conditions. MgO2 has a cubic pyrite structure, but it is not stable against decomposition: MgO2 → MgO + 1/2O2.

36 MATERIALS SCIENCE↗

Modelling of radiative transfer by the Monte Carlo method and solving the inverse problem based on a genetic algorithm according to experimental results of aerosol sensing on short paths using a femtosecond laser source

We consider the algorithms that implement a broadband ('multiwave') radiative transfer with allowance for multiple (aerosol) scattering and absorption by main atmospheric gases. In the spectral range of 0.6 – 1 μm, a closed numerical simulation of modifications of the supercontinuum component of a probing femtosecond pulse is performed. In the framework of the algorithms for solving the inverse atmospheric-optics problems with the help of a genetic algorithm, we give an interpretation of the experimental backscattered spectrum of the supercontinuum. An adequate reconstruction of the distribution mode for the particles of artificial aerosol with the narrow-modal distributions in a size range of 0.5 – 2 mm and a step of 0.5 mm is obtained. (light scattering)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Genetic-algorithm retrieval of the molecular alignment distribution with high-order harmonics generated from transiently aligned CO 2 molecules

Using genetic algorithm, we propose a method to retrieve the alignment distribution of transiently aligned CO 2 molecules from the high-order harmonic generation (HHG) spectra. The retrieval method is based on the quantitative rescattering (QRS) model where averaged photorecombination transition dipole can be factored out from the parallel (or perpendicular) harmonic spectra after the propagation of the harmonic fields in the gas medium. We examine how the retrieved alignment distributions are affected by uncertainty in alignment dependent ionization probability and on multiple orbital contribution to the HHG. We further confirm that alignment distribution is more accurately retrieved by using the minima in the HHG spectra driven by a long-wavelength laser. In addition, we show that earlier experimental data on the ratios between the perpendicular and the parallel HHG components of aligned CO 2 molecules are in better agreement with the QRS model if the macroscopic propagation and multiple orbital interference are included in the theoretical calculation.

74 ATOMIC AND MOLECULAR PHYSICS↗