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NASA NTRS2010

Integrating Enhanced Grace Terrestrial Water Storage Data Into the U.S. and North American Drought Monitors

NASA's Gravity Recovery and Climate Experiment (GRACE) satellites measure time variations nf the Earth's gravity field enabling reliable detection of spatio-temporal variations in total terrestrial water storage (TWS), including ground water. The U.S. and North American Drought Monitors are two of the premier drought monitoring products available to decision-makers for assessing and minimizing drought impacts, but they rely heavily on precipitation indices and do not currently incorporate systematic observations of deep soil moisture and groundwater storage conditions. Thus GRACE has great potential to improve the Drought Monitors hy filling this observational gap. Horizontal, vertical and temporal disaggregation of the coarse-resolution GRACE TWS data has been accomplished by assimilating GRACE TWS anomalies into the Catchment Land Surface Model using ensemble Kalman smoother. The Drought Monitors combine several short-term and long-term drought indices and indicators expressed in percentiles as a reference to their historical frequency of occurrence for the location and time of year in question. To be consistent, we are in the process of generating a climatology of estimated soil moisture and ground water based on m 60-year Catchment model simulation which will subsequently be used to convert seven years of GRACE assimilated fields into soil moisture and groundwater percentiles. for systematic incorporation into the objective blends that constitute Drought Monitor baselines. At this stage we provide a preliminary evaluation of GRACE assimilated Catchment model output against independent datasets including soil moisture observations from Aqua AMSR-E and groundwater level observations from the U.S. Geological Survey's Groundwater Climate Response Network.

Housborg, Rasmus↗
NASA NTRS2011

Overview of NASA's Carbon Monitoring System Flux-Pilot Project

NASA's space-based observations of physical, chemical and biological parameters in the Earth System along with state-of-the-art modeling capabilities provide unique capabilities for analyses of the carbon cycle. The Carbon Monitoring System is developing an exploratory framework for detecting carbon in the environment and its changes, with a view towards contributing to national and international monitoring activities. The Flux-Pilot Project aims to provide a unified view of land-atmosphere and ocean-atmosphere carbon exchange, using observation-constrained models. Central to the project is the application of NASA's satellite observations (especially MODIS), the ACOS retrievals of the JAXA-GOSAT observations, and the "MERRA" meteorological reanalysis produced with GEOS-S. With a primary objective of estimating uncertainty in computed fluxes, two land- and two ocean-systems are run for 2009-2010 and compared with existing flux estimates. An transport model is used to evaluate simulated CO2 concentrations with in-situ and space-based observations, in order to assess the realism of the fluxes and how uncertainties in fluxes propagate into atmospheric concentrations that can be more readily evaluated. Finally, the atmospheric partial CO2 columns observed from space are inverted to give new estimates of surface fluxes, which are evaluated using the bottom-up estimates and independent datasets. The focus of this presentation will be on the science goals and current achievements of the pilot project, with emphasis on how policy-relevant questions help focus the scientific direction. Examples include the issue of what spatio-temporal resolution of fluxes can be detected from polar-orbiting satellites and whether it is possible to use space-based observations to separate contributions to atmospheric concentrations of (say) fossil-fuel and biological activity

Pawson, Steven↗
NASA NTRS2020

The interactive global fire module pyrE (v1.0)

Fires affect the composition of the atmosphere and Earth’s radiation balance by emitting a suite of reactive gases and particles. An interactive fire module in an Earth system model (ESM) allows us to study the natural and anthropogenic drivers, feedbacks, and interactions of open fires. To do so, we have developed pyrE, the NASA GISS (Goddard Institute for Space Studies) interactive fire emissions *module. The pyrE module is driven by environmental variables like flammability and cloud-to-ground lightning, calculated by the GISS ModelE ESM, and parameterized by anthropogenic impacts based on population density data. Fire emissions are generated from the flaming phase in pyrE (active fires). Using pyrE, we examine fire occurrence, regional fire suppression, burned area, fire emissions, and how it all affects atmospheric composition. To do so, we evaluate pyrE by comparing it to satellite-based datasets of fire count, burned area, fire emissions, and aerosol optical depth (AOD). We demonstrate pyrE’s ability to simulate the daily and seasonal cycles of open fires and resulting emissions. Our results indicate that interactive fire emissions are biased low by 32 %–42 %, depending on emitted species, compared to the GFED4s (Global Fire Emissions Database) inventory. The bias in emissions drives underestimation in column densities, which is diluted by natural and anthropogenic emissions sources and production and loss mechanisms. Regionally, the resulting AOD of a simulation with interactive fire emissions is underestimated mostly over Indonesia compared to a simulation with GFED4s emissions and to MODIS AOD. In other parts of the world pyrE’s performance in terms of AOD is marginal to a simulation with prescribed fire emissions.

Fires↗
NASA NTRS2022

Effective Uncertainty Quantification for Multi-Angle Polarimetric Aerosol Remote Sensing Over Ocean

Multi-angle polarimetric (MAP) measurements can enable detailed characterization of aerosol microphysical and optical properties and improve atmospheric correction in ocean color remote sensing. Advanced retrieval algorithms have been developed to obtain multiple geophysical parameters in the atmosphere–ocean system. Theoretical pixel-wise retrieval uncertainties based on error propagation have been used to quantify retrieval performance and determine the quality of data products. However, standard error propagation techniques in high-dimensional retrievals may not always represent true retrieval errors well due to issues such as local minima and the nonlinear dependence of the forward model on the retrieved parameters near the solution. In this work, we analyze these theoretical uncertainty estimates and validate them using a flexible Monte Carlo approach. The Fast Multi-Angular Polarimetric Ocean coLor (FastMAPOL) retrieval algorithm, based on efficient neural network forward models, is used to conduct the retrievals and uncertainty quantification on both synthetic HARP2 (Hyper-Angular Rainbow Polarimeter 2) and AirHARP (airborne version of HARP2) datasets. In addition, for practical application of the uncertainty evaluation technique in operational data processing, we use the automatic differentiation method to calculate derivatives analytically based on the neural network models. Both the speed and accuracy associated with uncertainty quantification for MAP retrievals are addressed in this study. Pixel-wise retrieval uncertainties are further evaluated for the real AirHARP field campaign data. The uncertainty quantification methods and results can be used to evaluate the quality of data products, as well as guide MAP algorithm development for current and future satellite systems such as NASA’s Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission.

PACE↗
NASA NTRS2010

Statistical Analysis of Model Data for Operational Space Launch Weather Support at Kennedy Space Center and Cape Canaveral Air Force Station

The 12-km resolution North American Mesoscale (NAM) model (MesoNAM) is used by the 45th Weather Squadron (45 WS) Launch Weather Officers at Kennedy Space Center (KSC) and Cape Canaveral Air Force Station (CCAFS) to support space launch weather operations. The 45 WS tasked the Applied Meteorology Unit to conduct an objective statistics-based analysis of MesoNAM output compared to wind tower mesonet observations and then develop a an operational tool to display the results. The National Centers for Environmental Prediction began running the current version of the MesoNAM in mid-August 2006. The period of record for the dataset was 1 September 2006 - 31 January 2010. The AMU evaluated MesoNAM hourly forecasts from 0 to 84 hours based on model initialization times of 00, 06, 12 and 18 UTC. The MesoNAM forecast winds, temperature and dew point were compared to the observed values of these parameters from the sensors in the KSC/CCAFS wind tower network. The data sets were stratified by model initialization time, month and onshore/offshore flow for each wind tower. Statistics computed included bias (mean difference), standard deviation of the bias, root mean square error (RMSE) and a hypothesis test for bias = O. Twelve wind towers located in close proximity to key launch complexes were used for the statistical analysis with the sensors on the towers positioned at varying heights to include 6 ft, 30 ft, 54 ft, 60 ft, 90 ft, 162 ft, 204 ft and 230 ft depending on the launch vehicle and associated weather launch commit criteria being evaluated. These twelve wind towers support activities for the Space Shuttle (launch and landing), Delta IV, Atlas V and Falcon 9 launch vehicles. For all twelve towers, the results indicate a diurnal signal in the bias of temperature (T) and weaker but discernable diurnal signal in the bias of dewpoint temperature (T(sub d)) in the MesoNAM forecasts. Also, the standard deviation of the bias and RMSE of T, T(sub d), wind speed and wind direction indicated the model error increased with the forecast period all four parameters. The hypothesis testing uses statistics to determine the probability that a given hypothesis is true. The goal of using the hypothesis test was to determine if the model bias of any of the parameters assessed throughout the model forecast period was statistically zero. For th is dataset, if this test produced a value >= -1 .96 or <= 1.96 for a data point, then the bias at that point was effectively zero and the model forecast for that point was considered to have no error. A graphical user interface (GUI) was developed so the 45 WS would have an operational tool at their disposal that would be easy to navigate among the multiple stratifications of information to include tower locations, month, model initialization times, sensor heights and onshore/offshore flow. The AMU developed the GUI using HyperText Markup Language (HTML) so the tool could be used in most popular web browsers with computers running different operating systems such as Microsoft Windows and Linux.

Bauman, William H., III↗
NASA NTRS2021

Exploring Sentinel-1 and Sentinel-2 diversity for Flood inundation mapping using deep learning

Identification of flood water extent from satellite images has historically relied on either synthetic aperture radar (SAR) or multi-spectral (MS) imagery. MS sensors are limited to cloud free conditions, whereas SAR imagery is plagued by noise-like speckle. Prior studies that use combinations of MS and SAR data to overcome individual limitations of these sensors have not fully examined sensitivity of flood mapping performance to different combinations of SAR and MS derived spectral indices or band transformations in color space. This study explores the use of diverse bands of Sentinel 2 (S2) through well-established water indices and Sentinel 1 (S1) derived SAR imagery along with their combinations to assess their capability for generating accurate flood inundation maps. The robustness in performance of S-1 and S-2 band combinations was evaluated using 446 hand labeled flood inundation images spanning across 11 flood events from Sen1Floods11 dataset which are highly diverse in terms of land cover as well as location. A modified K-fold cross validation approach is used to evaluate the performance of 32 combinations of S1 and S2 bands using a fully connected deep convolutional neural network known as U-Net. Our results indicated that usage of elevation information has improved the capability of S1 imagery to produce more accurate flood inundation maps. Compared to a median F1 score of 0.62 when using only S1 bands, the combined use of S1 and elevation information led to an improved median F1 score of 0.73. Water extraction indices based on S2 bands have a statistically significant superior performance in comparison to S1. Among all the band combinations, HSV (Hue, Saturation, Value) transformation of S2 bands provides a median F1 score of 0.9, outperforming the commonly used water spectral indices owing to HSV’s transformation’s superior contrast distinguishing abilities. Additionally, U-Net algorithm was able to learn the relationship between raw S2 based water extraction indices and their corresponding raw S2 bands, but not of HSV owing to relatively complex computation involved in the latter. Results of the paper establishes important benchmarks for the extension of S1 and S2 data-based flood inundation mapping efforts over large spatial extents.

Goutam Konapala↗
NASA NTRSDate not supplied

Towards an Aviation Large Language Model by Fine-tuning and Evaluating Transformers

In the aviation domain, there are many applications for machine learning and artificial intelligence tools that utilize natural language. For example, there is a desire to know the commonalities in written safety reports such as voluntary post incidents reports or create more accurate transcripts of air traffic management conversations. Another use-case is the possibility of extracting airspace procedures and constraints currently written in documents such as Letters of Agreement (LOA) which is used as the evaluation case in this paper. These applications can benefit from the use of state-of-the-art Natural Language Processing (NLP) techniques when adapted to the language/phraseology specific to the aviation domain. This paper evaluates the viability of transferring pre-trained large language models to the aviation domain by adapting transformer based models using aviation datasets. This paper utilized two datasets to adapt a ‘Robustly Optimized Bidirectional Encoder Representations from Transformers Approach’ (RoBERTa) model and two down-stream classification tasks to assess its performance. These datasets are all built upon Letters of Agreement which are Federal Aviation Administration (FAA) documents that formalize airspace operations across the national airspace system. The first two datasets are used for the adaptation of RoBERTa to the aviation domain and were of different sizes to assess the number of documents needed to adapt to the aviation domain. They contain many examples of ‘aviation English’ using domain specific terminology and phrasing which serves as a representative basis to perform the unsupervised adaptation. The second dataset is a separate set of LOA documents with two sets of classification labels to be used for evaluation; one at the document level and one at the line level. These down-stream evaluations allowed the measurement of improvement by adapting RoBERTa. The accuracy increased by 4-6% on both tasks and the F1 score on the class of interest increased by 4-8% from the adaptation.

Air Traffic Management↗
NASA NTRSDate not supplied

Towards an Aviation Large Language Model by Fine-tuning and Evaluating Transformers

In the aviation domain, there are many applications for machine learning and artificial intelligence tools that utilize natural language. For example, there is a desire to know the commonalities in written safety reports such as voluntary post incidents reports or create more accurate transcripts of air traffic management conversations. Another use-case is the possibility of extracting airspace procedures and constraints currently written in documents such as Letters of Agreement (LOA) which is used as the evaluation case in this paper. These applications can benefit from the use of state-of-the-art Natural Language Processing (NLP) techniques when adapted to the language/phraseology specific to the aviation domain. This paper evaluates the viability of transferring pre-trained large language models to the aviation domain by adapting transformer based models using aviation datasets. This paper utilized two datasets to adapt a ‘Robustly Optimized Bidirectional Encoder Representations from Transformers Approach’ (RoBERTa) model and two down-stream classification tasks to assess its performance. These datasets are all built upon Letters of Agreement which are Federal Aviation Administration (FAA) documents that formalize airspace operations across the national airspace system. The first two datasets are used for the adaptation of RoBERTa to the aviation domain and were of different sizes to assess the number of documents needed to adapt to the aviation domain. They contain many examples of ‘aviation English’ using domain specific terminology and phrasing which serves as a representative basis to perform the unsupervised adaptation. The second dataset is a separate set of LOA documents with two sets of classification labels to be used for evaluation; one at the document level and one at the line level. These down-stream evaluations allowed the measurement of improvement by adapting RoBERTa. The accuracy increased by 4-6% on both tasks and the F1 score on the class of interest increased by 4-8% from the adaptation.

Air Traffic Management↗
NASA NTRS2018

The Importance of User Feedback in Sustaining Trusted Repositories

The NASA Earth Observation System Data and Information System (EOSDIS) has been operating since 1994 and is serving a global user community with well-managed Earth science data in a variety of scientific disciplines. EOSDIS processes, archives and distributes data and information products resulting from spaceborne and airborne instruments as well as in situ measurements from field campaigns. The Earth Science Data and Information System (ESDIS) Project at the NASA Goddard Space Flight Center manages EOSDIS with its 12 Distributed Active Archive Centers (DAACs) located across the United States. During the entire life of EOSDIS, the ESDIS Project and the DAACs have deployed many different mechanisms for user feedback, which have proven extremely valuable to their evolution and performance in their service to user communities. Some of the inputs from our user groups have resulted in fundamental changes in the architecture, design and operations of EOSDIS, while others have provided novel ideas for incremental changes. The EOSDIS DAACs have User Working Groups (UWGs) that represent broad user communities in the Earth science disciplines served by the DAACs. The UWGs meet periodically to assess and provide feedback on dataset and service priorities. As regular users of the data and services of the DAAC and experts in the scientific disciplines, the UWG members provide valuable inputs for planning and prioritizing the services, as well as addition of new datasets, for the benefit of the community. The EOSDIS is evaluated annually through an independently administered survey of its users resulting in the American Customer Satisfaction Index (ACSI). The survey provides an ACSI score as well as free-text suggestions from users, which are also helpful in making specific system improvements. In addition, each of the DAACs has a user services group that address on-going requests for help and other comments from users. The ESDIS Project has established a mechanism through the "earthdata" website (http://earthdata.nasa.gov) for users to provide feedback of any kind and these questions/comments are routed to the appropriate individuals in the Project or the DAACs. These various forms of receiving user feedback and responding to them continue to be extremely valuable in evolving and sustaining our Earth Science repository.

Behnke, Jeanne↗
NASA NTRS2021

Semantic Segmentation of High-Resolution Satellite Imagery using Generative Adversarial Networks with Progressive Growing

With increase in urbanization and Earth Sciences research into urban areas, the need to quickly and accurately segment urban rooftop maps has never been greater. Cur-rent machine learning techniques struggle to produce high accuracy maps in dense urban zones where there is high image noise and foot print overlap. In this paper, we evaluate a training methodology for pixel-wise segmentation for high resolution satellite imagery using progressive growing of generative adversarial networks as a solution. We apply our model to segmenting building rooftops and compare these results to conventional methods for rooftop segmentation. We evaluate our approach using the SpaceNet version 2 and xView datasets. Our experiments show that for SpaceNet, progressive Generative Adversarial Network (GAN) training achieved a test accuracy of 93% compared to 89% for traditional GAN training and 87% for U-Net architecture, while for xView, we achieved 71% accuracy using progressive GAN training compared to 69% through traditional GAN training and 65% using U-Net.

Semantic↗
NASA NTRS2022

Re-Evaluation of Low Cloud Amount Relationships With Lower-Tropospheric Stability and Estimated Inversion Strength

Lower-tropospheric stability (LTS) and estimated inversion strength (EIS) have a widely accepted relationship with low cloud amount and are key observational foundations for understanding and modeling low-level stratiform clouds. Using the updated surface-based and satellite cloud data, we find that low cloud amount is not as strongly correlated with LTS, and not as sensitive to LTS, as established in the past. EIS does not provide a stronger correlation with low cloud amount than LTS over all eight regions (including the midlatitudes). Further analyzing the relationships between LTS and EIS with different types of low clouds, we find that there is a strong correlation of LTS and EIS with stratocumulus only. This explains the weaker correlation of low cloud fraction (including cumulus, stratocumulus, and stratus) to both LTS and EIS. These results also suggest the need to re-evaluate these relationships in Earth system models. Plain Language Summary: Low-level clouds play an important role in the global radiation budget. Low cloud amount has two established linear relationships with lower-tropospheric stability (LTS) and estimated inversion strength (ETS). These two relationships are re-evaluated here using three separate observational cloud and two reanalysis datasets for three distinct but overlapping time periods. The analysis shows that the strength of the LTS and ETS relationships with low cloud amount varies, depending on the cloud data used. They have a strong relationship with stratocumulus cloud amount only.

Lauren Cutler↗
NASA NTRSDate not supplied

The Next Frontier for Remote Sensing of Freshwater HABS: Utilizing Imaging Spectroscopy Data to Identify Cyanobacteria Bloom Types

Cyanobacteria Harmful Algal Blooms (HABs) and their associated toxicity are a concern for inland waters. Due to the extensive spatial coverage and frequent data availability of satellite-based sensors, multi-spectral remote sensing tools have demonstrated utility for monitoring, understanding, and managing these blooms. The next frontier is utilizing high spectral resolution imaging spectroscopy data, such as from NASA’s upcoming PACE, GLIMR, and SBG missions planned for this decade, which allow for the development of more sophisticated cyanobacteria detection algorithms. We evaluate the performance of cyanobacteria genera differentiation algorithms using precursor datasets in support of these upcoming hyperspectral missions. In situ measurements of lake optical, biological, chemical, and physical properties are used to characterize cyanobacteria blooms in hypereutrophic Clear Lake, CA, USA, which supports large, diverse algal and cyanobacteria populations. Data collection occurred during 12 field events in 2021-2022 across all seasons. Three field events were conducted concurrently with hyperspectral data acquisitions from the DESIS sensor on the International Space Station. The results of this study will support the development of future tools utilizing satellite-based imaging spectroscopy data to identify the cyanobacteria genera present in a bloom, and thus the potential for cyanotoxin production. This outcome – the ability to quickly characterize a cyanobacteria bloom at a low cost – will have enormous benefits for public health.

remote sensing↗
NASA NTRSDate not supplied

Quantitative Assessment of the HLS Surface Reflectance Consistency

The Harmonized Landsat and Sentinel-2 (HLS) project produces compatible surface reflectance (SR) from observations acquired by Landsat-8/9 OLI and Sentinel-2A/2B MSI. The HLS harmonization procedures include atmosphere correction, cloud masking, view angle normalization, and bandpass adjustment. The objective of this study is to quantitatively assess the reflectance consistency between Landsat and Sentinel-2 within the Version 2 HLS data. We collected 545 pairs of same-day Landsat/Sentinel-2 images across the globe to represent a wide range of vegetation types and climate regimes. The mean absolute difference (MAD) in reflectance between Landat and Sentinel-2 was calculated as a consistency indicator for each harmonization step. The MAD generally increased after the atmosphere correction, and then greatly decreased after the BRDF and bandpass adjustments, to smaller than the top-of-atmosphere MAD values. The MAD ranged from 0.0048 to 0.0093 for the six common spectral bands (blue, green, red, NIR, SWIR1, and SWIR2) in the final products, only slightly greater than the difference between Landsat and Sentinel-2 calibrations.. An evaluation on a few commonly used vegetation indices also showed good agreement between Landsat and Sentinel-2 reflectance. All these evaluations demonstrate that the HLS project produces a consistent SR dataset from Landsat-OLI and Sentinel-MSI, which will be a valuable resource for a wide range of remote sensing applications.

Qiang Zhou↗
NASA NTRS2017

Metadata Evaluation and Improvement: Evolving Analysis and Reporting

ESIP Community members create and manage a large collection of environmental datasets that span multiple decades, the entire globe, and many parts of the solar system. Metadata are critical for discovering, accessing, using and understanding these data effectively and ESIP community members have successfully created large collections of metadata describing these data. As part of the White House Big Earth Data Initiative (BEDI), ESDIS has developed a suite of tools for evaluating these metadata in native dialects with respect to recommendations from many organizations. We will describe those tools and demonstrate evolving techniques for sharing results with data providers.

metadata recommendations↗
NASA NTRSDate not supplied

The SCIFLI Airborne Observation of Artemis 1 Ascent

SCIFLI, The Scientifically Calibrated In-Flight Imagery (https://scifli.larc.nasa.gov/), team at NASA Langley Research Center specializes in the collection of multispectral data for space vehicles during Ascent and Entry, Descent, and Landing (EDL) observations. Multispectral datasets are invaluable across the NASA Agency and to commercial stakeholders for evaluating the performance of launch and re-entry space vehicles and ensuring the safety of the scientific research community. The launch of Artemis 1 marked the initiation of NASA returning to lunar exploration. SCIFLI’s Airborne Multispectral Imager (SAMI) was deployed by the SCIFLI team to scientifically document the historic event and provide the NASA research community with aerial footage of the event in wavelength channels ranging from the ultraviolet (UV) to the visible (VIS) to mid-wave infrared (MWIR). SAMI was designed to spectrally image unique aerothermal phenomena during the Artemis 1 launch. The use of these datasets captured in-flight during the launch will provide insight to research organizations across the Agency; aiding in validation efforts for simulations and modeling that contributed to the kickoff of the Agency’s resurgence to lunar exploration. This presentation will focus on the imagery captured on SAMI by the WB-57 team on November 16th, 2022, during the observation. Imaging objectives were identified and considered beforehand to determine the configuration of the SAMI instrument for the imaging mission. SCIFLI and Opto-Knowledge Systems, Inc. (OKSI) performed a thorough review of the datasets collected to identify and characterize aerothermal phenomena occurring during the observation. Additional post-processing was completed to provide quantitatively calibrated temperature images of the rocket during the observation. Some of the candidates were not optimal for quantitative temperature extraction due to common degradation factors, but after various image enhancements they proved useful for qualitatively characterizing different phenomena during the observation.

Artemis1↗
NASA NTRSDate not supplied

Evaluation of Spectral Band Adjustment Factors for Cross-Calibration of Visible Imagers

The CERES EBAF dataset provides TOA SW and LW fluxes for long-term monitoring of the Earth’s energy balance and to validate climate models. The EBAF products, based on the Terra and Aqua CERES instrument observed radiances, rely on coincident measurements from the onboard MODIS imagers to determine cloud properties that are used in the angular distribution model scene selection required to convert the CERES observed radiances into flux values. Once the Terra and Aqua orbits start drifting outside of their 15-minute window, the CERES project will rely solely on the NOAA-20 CERES observations. A seamless transition of fluxes and clouds can only occur if the analogous MODIS and VIIRS channels are properly inter-calibrated. The visible band (0.65 µm) in MODIS (band 1) and VIIRS (M5 or I1) is critical for retrieving the cloud mask and optical depth. The spectral response functions (SRF) of these bands differ noticeably and will require scene dependent spectral band adjustment factors (SBAF) for proper radiometric scaling between them. Fortunately, the VIIRS I1 and M5 bands are calibrated using the same solar diffuser as a reference, which implies that band reflectance differences must be due to the spectral disparity. The coincident I1 and M5 TOA reflectance measurements provide the optimal opportunity to validate SBAFs over many surface and cloud conditions. The CERES project maintains SCIAMACHY, GOME-2, Hyperion, and radiative transfer model-based scene-stratified hyper-spectral reflectance measurements that can be convolved with sensor pair SRFs to compute the corresponding SBAF. This study will evaluate the SCIAMACHY, GOME-2, Hyperion, and RTM based SBAFs over tropical ocean targets used in SNO inter-calibration of MODIS and VIIRS, including clear-sky ocean, deep convective clouds (DCC), and liquid cloud targets in terms of their applicability to absolute intercomparison of visible imagers. The large SCIAMACHY and GOME-2 footprints and the lack of Hyperion cloudy scenes will impact the resulting SBAFs and necessitates the need for future CLARREO hyper-spectral reflectances to decrease SBAF uncertainties Preliminary results indicate that the SCIAMACHY and GOME-2 based SBAFs for the VIIRS I1 and M5 band pairs may differ by 1.5% for some ATO scene types. Because most of the modern GEOs visible band SRFs encompass the VIIRS I1 band SRF, these evaluations are critical to ensure that the MODIS, VIIRS, and GEO clouds and fluxes are consistent. SBAFs for Libya-4, Dome-C and other Earth invariant target will also be evaluated.

D. R. Doelling↗
NASA NTRSDate not supplied

Batch Effect Correction Methods for NASA GeneLab Transcriptomic Datasets

RNA sequencing (RNA-seq) data from space biology experiments promise to yield invaluable insights into the effects of spaceflight on terrestrial biology. However, sample numbers from each study are low due to limited crew availability, hardware, and space. To increase statistical power, spaceflight RNA-seq datasets from different missions are often aggregated together. However, this can introduce technical variation or "batch effects", often due to differences in sample handling, sample processing, and sequencing platforms. Several computational methods have been developed to correct for technical batch effects, thereby reducing their impact on true biological signals. In this study, we combined 7 mouse liver RNA-seq datasets from NASA GeneLab (part of the NASA Open Science Data Repository) to evaluate several common batch effect correction methods (ComBat and ComBat-seq from the sva R package, and Median Polish, Empirical Bayes, and ANOVA from the MBatch R package). We quantitatively evaluated the ability of these methods to correct for technical batch variables in space biology RNA-seq data using the following criteria: BatchQC, principal component analysis, dispersion separability criterion, log fold change correlation, and differential gene expression analysis. Each batch variable / correction method combination was then assessed using a custom scoring approach to identify the optimal correction method for the combined dataset, by geometrically probing the space of all allowable scoring functions to yield an aggregate volume-based scoring measure. Finally, we describe the way in which the GeneLab multi-study analysis and visualization portal will allow users to examine the presence or absence of batch effects using multiple metrics. If the user chooses to perform batch effect correction, the scoring approach described here can be implemented to identify the optimal correction method to use for their specific combined dataset prior to analysis.

Lauren M. Sanders↗