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At least 181 records · Page 10

Development of a Freeze-Dried CRISPR-Cas12 Sensor for Detecting Wolbachia in the Secondary Science Classroom

Training the future synthetic biology workforce requires the opportunity for students to be exposed to biotechnology concepts and activities in secondary education. Detecting Wolbachia bacteria in arthropods using polymerase chain reaction (PCR) has become a common way for secondary students to investigate and apply recombinant DNA technology in the science classroom. Despite this important activity, cutting-edge biotechnologies such as clustered regularly interspaced short palindromic repeat (CRISPR)-based diagnostics have yet to be widely implemented in the classroom. To address this gap, we present a freeze-dried CRISPR-Cas12 sensing reaction to complement traditional recombinant DNA technology education and teach synthetic biology concepts. The reactions accurately detect Wolbachia from arthropod-derived PCR samples in under 2 h and can be stored at room temperature for over a month without appreciable degradation. Here, the reactions are easy-to-use and cost less than $40 to implement for a classroom of 22 students including the cost of reusable equipment. We see these freeze-dried CRISPR-Cas12 reactions as an accessible way to incorporate synthetic biology education into the existing biology curriculum, which will expand biology educational opportunities in science, technology, engineering, and mathematics.

59 BASIC BIOLOGICAL SCIENCES↗

Automated High-Pressure Titration System with In Situ Infrared Spectroscopic Detection

A fully automated titration system with infrared detection was developed for investigating interfacial chemistry at high pressures. The apparatus consists of a high-pressure fluid generation and delivery system coupled to a high-pressure cell with infrared optics. A manifold of electronically actuated valves is used to direct pressurized fluids into the cell. Precise reagent additions to the pressurized cell are made with calibrated tubing loops that are filled with reagent and placed in-line with the cell and a syringe pump. The cell’s infrared optics facilitate both transmission and attenuated total reflection (ATR) measurements to monitor bulk-fluid composition and solid-surface phenomena such as adsorption, desorption, complexation, dissolution, and precipitation. Switching between the two measurement modes is accomplished with moveable mirrors that direct radiation from a Fourier transform infrared spectrometer into the cell along transmission or ATR light paths. The versatility of the high-pressure IR titration system is demonstrated with three case studies. First, we titrated water into supercritical CO2 (scCO2) to generate an infrared calibration curve and determine the solubility of water in CO2 at 50 °C and 90 bar. Next, we characterized the partitioning of water between a montmorillonite clay and scCO2 at 50 °C and 90 bar. Transmission-mode spectra were used to quantify changes in the clay’s sorbed water concentration as a function of scCO2 hydration, and ATR measurements provided insights into competitive residency of water and CO2 on the clay surface and in the interlayer. Finally, we demonstrated how time-dependent studies can be conducted with the system by monitoring the carbonation reaction of forsterite (Mg2SiO4) in water-bearing scCO2 at 50 °C and 90 bar. Immediately after water dissolved in the scCO2, a thin film of adsorbed water formed on the mineral surface, and the film thickness increased with time as the forsterite began to dissolve. However, after approximately 2.5 hours, the trend reversed, and a carbonate precipitate began to form on the forsterite surface, exposing dramatic chemical changes in the thin-water film. Collectively, these applications illustrate how the high-pressure IR titration system can provide molecular-level information about the interactions between variably wet scCO2 and minerals relevant to underground storage of CO2 (geologic carbon sequestration). The apparatus could also be utilized to study high-pressure interfacial chemistry in other areas such as catalysis, polymerization, food processing, and oil and gas recovery.

Environmental Molecular Sciences Laboratory↗

Extended performance gas Cherenkov detector for gamma-ray detection in high-energy density experiments

A new Gas Cherenkov Detector (GCD) with low-energy threshold and high sensitivity, currently known as Super GCD (or GCD-3 at OMEGA), is being developed for use at the OMEGA Laser Facility and the National Ignition Facility (NIF). Super GCD is designed to be pressurized to ≤400 psi (absolute) and uses all metal seals to allow the use of fluorinated gases inside the target chamber. This will allow the gamma energy threshold to be run as low at 1.8 MeV with 400 psi (absolute) of C{sub 2}F{sub 6}, opening up a new portion of the gamma ray spectrum. Super GCD operating at 20 cm from TCC will be ∼400 × more efficient at detecting DT fusion gammas at 16.7 MeV than the Gamma Reaction History diagnostic at NIF (GRH-6m) when operated at their minimum thresholds.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Coherent (photon) vs incoherent (current) detection of multidimensional optical signals from single molecules in open junctions

The nonlinear optical response of a current-carrying single molecule coupled to two metal leads and driven by a sequence of impulsive optical pulses with controllable phases and time delays is calculated. Coherent (stimulated, heterodyne) detection of photons and incoherent detection of the optically induced current are compared. Using a diagrammatic Liouville space superoperator formalism, the signals are recast in terms of molecular correlation functions which are then expanded in the many-body molecular states. Two dimensional signals in benzene-1,4-dithiol molecule show cross peaks involving charged states. The correlation between optical and charge current signal is also observed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Minding the MeV gap: The indirect detection of low mass dark matter

We consider the prospects for the indirect detection of low mass dark matter which couples dominantly to quarks. If the center of mass energy is below about 280 MeV, the kinematically allowed final states will be dominated by photons and neutral pions, producing striking signatures at gamma ray telescopes. In fact, an array of new instruments have been proposed, which would greatly improve sensitivity to photons in this energy range. We find that planned instruments can improve on current sensitivity to dark matter models of this type by up to a few orders of magnitude.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Searches for anisotropies in the arrival directions of the highest energy cosmic rays detected by the Pierre Auger Observatory

We analyze the distribution of arrival directions of ultra-high-energy cosmic rays recorded at the Pierre Auger Observatory in 10 years of operation. The data set, about three times larger than that used in earlier studies, includes arrival directions with zenith angles up to 80°, thus covering from −90{sup ∘} to +45{sup ∘} in declination. After updating the fraction of events correlating with the active galactic nuclei (AGNs) in the Véron-Cetty and Véron catalog, we subject the arrival directions of the data with energies in excess of 40 EeV to different tests for anisotropy. We search for localized excess fluxes, self-clustering of event directions at angular scales up to 30°, and different threshold energies between 40 and 80 EeV. We then look for correlations of cosmic rays with celestial structures both in the Galaxy (the Galactic Center and Galactic Plane) and in the local universe (the Super-Galactic Plane). We also examine their correlation with different populations of nearby extragalactic objects: galaxies in the 2MRS catalog, AGNs detected by Swift-BAT, radio galaxies with jets, and the Centaurus A (Cen A) galaxy. None of the tests show statistically significant evidence of anisotropy. The strongest departures from isotropy (post-trial probability ∼1.4%) are obtained for cosmic rays with E>58 EeV in rather large windows around Swift AGNs closer than 130 Mpc and brighter than 10{sup 44} erg s{sup −1} (18° radius), and around the direction of Cen A (15° radius).

79 ASTRONOMY AND ASTROPHYSICS↗

Simultaneous Detection of Water, Methane, and Carbon Monoxide in the Atmosphere of Exoplanet HR 8799 b

Here, absorption lines from water, methane, and carbon monoxide are detected in the atmosphere of exoplanet HR 8799 b. A medium-resolution spectrum presented here shows well-resolved and easily identified spectral features from all three molecules across the K band. The majority of the lines are produced by CO and H 2 O, but several lines clearly belong to CH 4 . Comparisons between these data and atmosphere models covering a range of temperatures and gravities yield log mole fractions of H 2 O between –3.09 and –3.91, CO between –3.30 and –3.72, and CH 4 between –5.06 and –5.85. More precise mole fractions are obtained for each temperature and gravity studied. A reanalysis of H-band data, previously obtained at a similar spectral resolution, results in a nearly identical water abundance as determined from the K-band spectrum. The methane abundance is shown to be sensitive to vertical mixing and indicates an eddy diffusion coefficient in the range of 10 6 –10 8 cm 2 s –1 , comparable to mixing in the deep troposphere of Jupiter. The model comparisons also indicate a carbon-to-oxygen ratio (C/O) between ~0.58 and 0.7, encompassing previous estimates for a second planet in the same system, HR 8799 c. Super-stellar C/O could indicate planet formation by core-accretion; however, the range of possible C/O for these planets (and the star) is currently too large to comment strongly on planet formation. More precise values of the bulk properties (e.g., effective temperature and surface gravity) are needed for improved abundance estimates.

79 ASTRONOMY AND ASTROPHYSICS↗

DETECTION OF BROAD Hα EMISSION LINES IN THE LATE-TIME SPECTRA OF A HYDROGEN-POOR SUPERLUMINOUS SUPERNOVA

iPTF13ehe is a hydrogen-poor superluminous supernova (SLSN) at z = 0.3434, with a slow-evolving light curve and spectral features similar to SN2007bi. It rises in 83–148 days to reach a peak bolometric luminosity of ∼1.3 × 10{sup 44} erg s{sup −1}, then decays slowly at 0.015 mag day{sup −1}. The measured ejecta velocity is ∼ 13,000 km s{sup −1}. The inferred explosion characteristics, such as the ejecta mass (70–220 M{sub ⊙}), and the total radiative and kinetic energy (E{sub rad} ∼ 10{sup 51} erg, E{sub kin} ∼ 2 × 10{sup 53} erg), are typical of slow-evolving H-poor SLSN events. However, the late-time spectrum taken at +251 days (rest, post-peak) reveals a Balmer Hα emission feature with broad and narrow components, which has never been detected before among other H-poor SLSNe. The broad component has a velocity width of ∼4500 km s{sup −1} and a ∼300 km s{sup −1} blueward shift relative to the narrow component. We interpret this broad Hα emission with a luminosity of ∼2 × 10{sup 41} erg s{sup −1} as resulting from the interaction between the supernova ejecta and a discrete H-rich shell, located at a distance of ∼4 × 10{sup 16} cm from the explosion site. This interaction causes the rest-frame r-band LC to brighten at late times. The fact that the late-time spectra are not completely absorbed by the shock-ionized H-shell implies that its Thomson scattering optical depth is likely ≤1, thus setting upper limits on the shell mass ≤30 M{sub ⊙}. Of the existing models, a Pulsational Pair Instability supernova model can naturally explain the observed 30 M{sub ⊙} H-shell, ejected from a progenitor star with an initial mass of (95–150) M{sub ⊙} about 40 years ago. We estimate that at least ∼15% of all SLSNe-I may have late-time Balmer emission lines.

79 ASTRONOMY AND ASTROPHYSICS↗

Identifying the theory of dark matter with direct detection

Identifying the true theory of dark matter depends crucially on accurately characterizing interactions of dark matter (DM) with other species. In the context of DM direct detection, we present a study of the prospects for correctly identifying the low-energy effective DM-nucleus scattering operators connected to UV-complete models of DM-quark interactions. We take a census of plausible UV-complete interaction models with different low-energy leading-order DM-nuclear responses. For each model (corresponding to different spin–, momentum–, and velocity-dependent responses), we create a large number of realizations of recoil-energy spectra, and use Bayesian methods to investigate the probability that experiments will be able to select the correct scattering model within a broad set of competing scattering hypotheses. We conclude that agnostic analysis of a strong signal (such as Generation-2 would see if cross sections are just below the current limits) seen on xenon and germanium experiments is likely to correctly identify momentum dependence of the dominant response, ruling out models with either “heavy” or “light” mediators, and enabling downselection of allowed models. However, a unique determination of the correct UV completion will critically depend on the availability of measurements from a wider variety of nuclear targets, including iodine or fluorine. We investigate how model-selection prospects depend on the energy window available for the analysis. In addition, we discuss accuracy of the DM particle mass determination under a wide variety of scattering models, and investigate impact of the specific types of particle-physics uncertainties on prospects for model selection.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for correlations between the arrival directions of IceCube neutrino events and ultrahigh-energy cosmic rays detected by the Pierre Auger Observatory and the Telescope Array

This study presents the results of different searches for correlations between very high-energy neutrino candidates detected by IceCube and the highest-energy cosmic rays measured by the Pierre Auger Observatory and the Telescope Array. We first consider samples of cascade neutrino events and of high-energy neutrino-induced muon tracks, which provided evidence for a neutrino flux of astrophysical origin, and study their cross-correlation with the ultrahigh-energy cosmic ray (UHECR) samples as a function of angular separation. We also study their possible directional correlations using a likelihood method stacking the neutrino arrival directions and adopting different assumptions on the size of the UHECR magnetic deflections. Finally, we perform another likelihood analysis stacking the UHECR directions and using a sample of through-going muon tracks optimized for neutrino point-source searches with sub-degree angular resolution. No indications of correlations at discovery level are obtained for any of the searches performed. The smallest of the p-values comes from the search for correlation between UHECRs with IceCube high-energy cascades, a result that should continue to be monitored.

79 ASTRONOMY AND ASTROPHYSICS↗

Prospects for detection of target-dependent annual modulation in direct dark matter searches

Earth's rotation about the Sun produces an annual modulation in the expected scattering rate at direct dark matter detection experiments. The annual modulation as a function of the recoil energy E R imparted by the dark matter particle to a target nucleus is expected to vary depending on the detector material. However, for most interactions a change of variables from E R to v min , the minimum speed a dark matter particle must have to impart a fixed E R to a target nucleus, produces an annual modulation independent of the target element. We recently showed that if the dark matter-nucleus cross section contains a non-factorizable target and dark matter velocity dependence, the annual modulation as a function of v min can be target dependent. Here we examine more extensively the necessary conditions for target-dependent modulation, its observability in present-day experiments, and the extent to which putative signals could identify a dark matter-nucleus differential cross section with a non-factorizable dependence on the dark matter velocity.

79 ASTRONOMY AND ASTROPHYSICS↗

Spherical cows in dark matter indirect detection

Dark matter (DM) halos have been previously known to be triaxial, but in studies of possible annihilation and decay signals they are often treated as approximately spherical. Here, we examine the asymmetry of potential indirect detection signals of DM annihilation and decay, exploiting the large statistics of the hydrodynamic simulation Illustris. We carefully investigate the effects of the baryons on the sphericity of annihilation and decay signals for both the case where the observer is at 8.5 kpc from the center of the halo (exemplified in the case of Milky Way-like halos), and for an observer situated well outside the halo. In the case of Galactic signals, we find that both annihilation and decay signals are expected to be quite symmetric, with axis ratios very different from 1 occurring rarely. In the case of extragalactic signals, while decay signals are still preferentially spherical, the axis ratio for annihilation signals has a much flatter distribution, with elongated profiles appearing frequently. Many of these elongated profiles are due to large subhalos and/or recent mergers. Comparing to gamma-ray emission from the Milky Way and X-ray maps of clusters, we find that the gamma-ray background appears less spherical/more elongated than the expected DM signal from the large majority of halos, and the Galactic gamma ray excess appears very spherical, while the X-ray data would be difficult to distinguish from a DM signal by elongation/sphericity measurements alone.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

FERMI LARGE AREA TELESCOPE DETECTION OF GRAVITATIONAL LENS DELAYED γ-RAY FLARES FROM BLAZAR B0218+357

Using data from the Fermi Large Area Telescope (LAT), we report the first clear γ-ray measurement of a delay between flares from the gravitationally lensed images of a blazar. The delay was detected in B0218+357, a known double-image lensed system, during a period of enhanced γ-ray activity with peak fluxes consistently observed to reach >20-50 × its previous average flux. An auto-correlation function analysis identified a delay in the γ-ray data of 11.46 ± 0.16 days (1σ) that is ∼1 day greater than previous radio measurements. Considering that it is beyond the capabilities of the LAT to spatially resolve the two images, we nevertheless decomposed individual sequences of superposing γ-ray flares/delayed emissions. In three such ∼8-10 day-long sequences within a ∼4 month span, considering confusion due to overlapping flaring emission and flux measurement uncertainties, we found flux ratios consistent with ∼1, thus systematically smaller than those from radio observations. During the first, best-defined flare, the delayed emission was detailed with a Fermi pointing, and we observed flux doubling timescales of ∼3-6 hr implying as well extremely compact γ-ray emitting regions.

79 ASTRONOMY AND ASTROPHYSICS↗

A Comparison of Radiation-Induced and High-Field Electrically Stress-Induced Interface Defects in Si/SiO 2 MOSFETs via Electrically Detected Magnetic Resonance

Here, we utilize electrically detected magnetic resonance (EDMR) measurements to compare high-field stressed, and gamma irradiated Si/SiO 2 metal–oxide–silicon (MOS) structures. We utilize spin-dependent recombination (SDR) EDMR detected using the Fitzgerald and Grove dc I-V approach to compare the effects of high-field electrical stressing and gamma irradiation on defect formation at and near the Si/SiO 2 interface. As anticipated, both greatly increase the concentration of P b centers (silicon dangling bonds at the interface) densities. The irradiation also generated a significant increase in the dc I-V EDMR response of E' centers (oxygen vacancies in the SiO 2 films), whereas the generation of an E' EDMR response in high-field stressing is much weaker than in the gamma irradiation case. These results likely suggest a difference in their physical distribution resulting from radiation damage and high electric field stressing.

42 ENGINEERING↗