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At least 181 records · Page 10

Artificial Intelligence Transforming Post-Translational Modification Research

Post-Translational Modifications (PTMs) are covalent changes to amino acids that occur after protein synthesis, including covalent modifications on side chains and peptide backbones. Many PTMs profoundly impact cellular and molecular functions and structures, and their significance extends to evolutionary studies as well. In light of these implications, we have explored how artificial intelligence (AI) can be utilized in researching PTMs. Initially, rationales for adopting AI and its advantages in understanding the functions of PTMs are discussed. Then, various deep learning architectures and programs, including recent applications of language models, for predicting PTM sites on proteins and the regulatory functions of these PTMs are compared. Finally, our high-throughput PTM-data-generation pipeline, which formats data suitably for AI training and predictions is described. We hope this review illuminates areas where future AI models on PTMs can be improved, thereby contributing to the field of PTM bioengineering.

59 BASIC BIOLOGICAL SCIENCES↗

Analysis of test data film generated by the lunar sounder (S-209)

The analysis of test films pertaining to the readiness of the Apollo 17 radar equipment is discussed. Emphasis is placed on the evaluation of the lunar sounder equipment. The lunar sounder experiment was to examine the lunar surface at three different radar frequencies of 2 meters, 60 meters, and 20 meters. Test films were made on the lunar sounder system to describe the purpose of the test, to describe the experiments used for analysis, and to provide conclusions reached after analysis.

Massey, N.↗

Input guide for computer programs to generate thermodynamic data for air and Freon CF4

FORTRAN computer programs were developed to calculate the thermodynamic properties of Freon 14 and air for isentropic expansion from given plenum conditions. Thermodynamic properties for air are calculated with equations derived from the Beattie-Bridgeman nonstandard equation of state and, for Freon 14, with equations derived from the Redlich-Quang nonstandard equation of state. These two gases are used in scale model testing of model rocket nozzle flow fields which requires simulation of the prototype plume shape with a cold flow test approach. Utility of the computer programs for use in analytical prediction of flow fields is enhanced by arranging card or tape output of the data in a format compatible with a method-of-characteristics computer program.

Tevepaugh, J. A.↗

Design of Software for Design of Finite Element for Structural Analysis

The concepts of software engineering which allow a user of the finite element method to describe a model, to collect and to check the model data in a data base as well as to form the matrices required for a finite element calculation are examined. Next the components of the model description are conceived including the mesh tree, the topology, the configuration, the kinematic boundary conditions, the data for each element, and the loads. The possibilities for description and review of the data are considered. The concept of the segments for the modularization of the programs follows the components of the model description. The significance of the mesh tree as a globular guiding structure will be understood in view of the principle of the unity of the model, the mesh tree, and the data base. The user-friendly aspects of the software system will be summarized: the principle of language communication, the data generators, error processing, and data security.

Helfrich, Reinhard↗

High temperature (900-1300 C) mechanical behaviour of dendritic web grown silicon ribbons - Strain rate and temperature dependence of the yield stress

The mechanical behavior of dendritic web Si ribbons close the melting point was studied experimentally. The goal of the study was to generate data for modeling the generation of stresses and dislocation structures during growth of dendritic web Si ribbons, thereby permitting modifications to the production process, i.e., the temperature profile, to lower production costs for the photovoltaic ribbons. A laser was used to cut specimens in the direction of growth of sample ribbons, which were then subjected to tensile tests at temperatures up to 1300 C in an Ar atmosphere. The tensile strengths of the samples increased when the temperature rose above 1200 C, a phenomena which was attributed to the diffusion of oxygen atoms to the quasi-dislocation sites. The migration to the potential dislocations sites effectively locked the dislocations.

Mathews, V. K.↗

The preliminary Long Duration Exposure Facility (LDEF) materials data base

A preliminary Long Duration Exposure Facility (LDEF) Materials Data Base was developed by the LDEF Materials Special Investigation Group (MSIG). The LDEF Materials Data Base is envisioned to eventually contain the wide variety and vast quantity of materials data generated for LDEF. The data is searchable by optical, thermal, and mechanical properties, exposure parameters (such as atomic oxygen flux), and author(s) or principal investigator(s). The LDEF Materials Data Base was incorporated into the Materials and Processes Technical Information System (MAPTIS). MAPTIS is a collection of materials data which was computerized and is available to engineers, designers, and researchers in the aerospace community involved in the design and development of spacecraft and related hardware. This paper describes the LDEF Materials Data Base and includes step-by-step example searches using the data base. Information on how to become an authorized user of the system is included.

Funk, Joan G.↗

Materials And Processes Technical Information System (MAPTIS) LDEF materials data base

A preliminary Long Duration Exposure Facility (LDEF) Materials Data Base was developed by the LDEF Materials Special Investigation Group (MSIG). The LDEF Materials Data Base is envisioned to eventually contain the wide variety and vast quantity of materials data generated from LDEF. The data is searchable by optical, thermal, and mechanical properties, exposure parameters (such as atomic oxygen flux) and author(s) or principal investigator(s). Tne LDEF Materials Data Base was incorporated into the Materials and Processes Technical Information System (MAPTIS). MAPTIS is a collection of materials data which has been computerized and is available to engineers, designers, and researchers in the aerospace community involved in the design and development of spacecraft and related hardware. The LDEF Materials Data Base is described and step-by-step example searches using the data base are included. Information on how to become an authorized user of the system is included.

Funk, Joan G.↗

The 12 - 24-day mode of global precipitation

Global precipitation estimates derived from satellite data at the Goddard Laboratory for Atmospheres for 1979-80 were used to explore time variations in global precipitation. Time series of the area-averaged precipitation (P) over the Asian-Australian (AA) monsoon (60 deg E - 120 deg W), and the extra-AA monsoon (120 deg W - 60 deg E) hemispheres were used in describing the variations. A distinct seesawlike intraseasonal variation of precipitation between these two hemispheres emerges from the two time series. Two intraseasonal (30 - 60 and 12 - 24 day) modes stand out in the spectral analysis of the two (P) time series. The 30 - 60-day mode is well known, while the 12 - 14-day mode is identified here for the first time. Using data generated by the Global Data Assimilation System of the National Meteorological Center, an effort was made to investigate the characteristics of the 12 - 14-day mode of global precipitation via potential functions for the 200-mb wind, water vapor transport, and precipitation. It is found that the 12 - 24-day mode exhibits a wavenumber 1 structure and propagates eastward. The seesaw intraseasonal variation of precipitation between the AA and extra-AA monsoon hemispheres is caused not only by the 30 - 60-day mode but also by the 12 - 24-day mode.

Chen, Tsing-Chang↗

Low-frequency variations in the atmospheric branch of the global hydrological cycle

The annual variation of the hydrological cycle is illustrated in terms of hemispheric-mean hydrological variables for the Northern and Southern Hemispheres, while the intraseasonal variations of the global hydrological cycle are illustrated with mean values over two hemispheres that form an east-west partition of the globe. This partition is defined by the 60 deg E-120 deg W great circle and was chosen so that the mean precipitation difference and the divergent water vapor transport between the two hemispheres was maximized. Two years (1979-80) of daily precipitation estimates from the Goddard Laboratory for Atmospheres an 14 years (1979-92) of upper-air data generated by the Global Data Assimilation System at the National Meteorological Center are used in making quantitative estimates of the annual and intraseasonal variations in the global hydrological cycle. The annual variations in hemispheric-mean precipitation (P-circumflex) and water vapor flux divergence (del(vector differential operator) dot Q-circumflex) for the Northern and Southern Hemispheres are comparable with amplitudes of about 0.5 approximately 0.7 mm/day. Both (P-circumflex) and (del(vector differential operator) dot Q-circumflex) vary annually in a coherent way in each hemisphere so that water vapor diverges from the winter hemisphere, where (P-circumflex) reaches its minimum, to the summer hemisphere, where (P-circumflex) attains its maximum. In fact, the hemispheric-mean divergence of water vapor flux changes sign during the annual cycle. Intraseasonal variations of hemispheric-mean precipitation mean P-tilde, evaporation mean E-tilde, and water vapor flux divergence mean del (vector differential operator) dot Q-tilde in the two hemisphres in the east-west direction are comparable with amplitudes of about 0.1 approximately 0.2 mm/day, although amplitudes in some cases exceed 0.3 mm/day. Hemispheric-mean precipitation mean P-tilde varies coherently in opposite phase for the two hemispheres, while mean del (vector differential operator) dot Q-tilde varies so that water vapor diverges from the hemisphere of maximum mean P-tilde to the hemisphere to the hemisphere of minimum mean P-tilde. Intraseasonal variations of mean P-tilde, mean E-tilde, and mean del (vector differential oprator) dot Q-tilde are in accord with the eastward propagation of the intraseasonal global divergent circulation.

Chen, Tsing-Chang↗

Investigation of the Seasonal Freeze/Thaw Cycle of Soils in the GAPP Regions

The objective of this project is to understand the current and future impacts and feedbacks of seasonally frozen ground on the regional and global climate system and the ecosystem as a whole. More specifically, we proposed to: investigate the dynamics of the seasonally freezing and thawing processes and their relations to current climatic conditions through in situ data analysis and numerical modeling; develop a comprehensive algorithm to detect surface soil freeze/thaw status for snow-free land surface using passive microwave remote sensing data and for snow-covered land surface using numerical modeling, and validate the algorithm and numerical model using available ground-based measurements; investigate seasonal and inter-annual variations of frozen soils in the GAPP regions using data generated from the new validated algorithm and their relations to the environmental factors such as air temperature, snow cover, surface morphology, soil type and soil moisture; generate a frozen soil data set which describes the timing, duration, thickness, and area extent of seasonally frozen ground for the period from 1978 to present. The proposed research will be accomplished through data analysis, remote sensing, and numerical modeling.

FREEZE-THAW TESTS↗

PDS4: Developing the Next Generation Planetary Data System

The Planetary Data System (PDS) is in the midst of a major upgrade to its system. This upgrade is a critical modernization of the PDS as it prepares to support the future needs of both the mission and scientific community. It entails improvements to the software system and the data standards, capitalizing on newer, data system approaches. The upgrade is important not only for the purpose of capturing results from NASA planetary science missions, but also for improving standards and interoperability among international planetary science data archives. As the demands of the missions and science community increase, PDS is positioning itself to evolve and meet those demands.

Crichton, D.↗

Automation and Process Improvement Enables a Small Team to Operate a Low Thrust Mission in Orbit Around the Asteroid Vesta

NASA's Dawn mission to the asteroid Vesta and dwarf planet Ceres launched September 27, 2007 and arrived at Vesta in July of 2011. This mission uses ion propulsion to achieve the necessary delta-V to reach and maneuver at Vesta and Ceres. This paper will show how the evolution of ground system automation and process improvement allowed a relatively small engineering team to transition from cruise operations to asteroid operations while maintaining robust processes. The cruise to Vesta phase lasted almost 4 years and consisted of activities that were built with software tools, but each tool was open loop and required engineers to review the output to ensure consistency. Additionally, this same time period was characterized by the evolution from manually retrieved and reviewed data products to automatically generated data products and data value checking. Furthermore, the team originally took about three to four weeks to design and build about four weeks of spacecraft activities, with spacecraft contacts only once a week. Operations around the asteroid Vesta increased the tempo dramatically by transitioning from one contact a week to three or four contacts a week, to fourteen contacts a week (every 12 hours). This was accompanied by a similar increase in activity complexity as well as very fast turn around activity design and build cycles. The design process became more automated and the tools became closed loop, allowing the team to build more activities without sacrificing rigor. Additionally, these activities were dependent on the results of flight system performance, so more automation was added to analyze the flight data and provide results in a timely fashion to feed the design cycle. All of this automation and process improvement enabled up the engineers to focus on other aspects of spacecraft operations, including spacecraft health monitoring and anomaly resolution.

ground system automation↗

Integrated Performance of Next Generation High Data Rate Receiver and AR4JA LDPC Codec for Space Communications

Low-density parity-check (LDPC) codes are the state-of-the-art in forward error correction (FEC) technology that exhibits capacity approaching performance. The Jet Propulsion Laboratory (JPL) has designed a family of LDPC codes that are similar in structure and therefore, leads to a single decoder implementation. The Accumulate-Repeat-by-4-Jagged- Accumulate (AR4JA) code design offers a family of codes with rates 1/2, 2/3, 4/5 and lengths 1024, 4096, 16384 information bits. Performance is less than one dB from capacity for all combinations.Integrating a stand-alone LDPC decoder with a commercial-off-the-shelf (COTS) receiver faces additional challenges than building a single receiver-decoder unit from scratch. In this work, we outline the issues and show that these additional challenges can be over-come by simple solutions. To demonstrate that an LDPC decoder can be made to work seamlessly with a COTS receiver, we interface an AR4JA LDPC decoder developed on a field-programmable gate array (FPGA) with a modern high data rate receiver and mea- sure the combined receiver-decoder performance. Through optimizations that include an improved frame synchronizer and different soft-symbol scaling algorithms, we show that a combined implementation loss of less than one dB is possible and therefore, most of the coding gain evidence in theory can also be obtained in practice. Our techniques can benefit any modem that utilizes an advanced FEC code.

Cheng, Michael K.↗

The CCSDS Next Generation Space Data Link Protocol (NGSLP)

The CCSDS space link protocols i.e., Telemetry (TM), Telecommand (TC), Advanced Orbiting Systems (AOS) were developed in the early growth period of the space program. They were designed to meet the needs of the early missions, be compatible with the available technology and focused on the specific link environments. Digital technology was in its infancy and spacecraft power and mass issues enforced severe constraints on flight implementations. Therefore the Telecommand protocol was designed around a simple Bose, Hocquenghem, Chaudhuri (BCH) code that provided little coding gain and limited error detection but was relatively simple to decode on board. The infusion of the concatenated Convolutional and Reed-Solomon codes5 for telemetry was a major milestone and transformed telemetry applications by providing them the ability to more efficiently utilize the telemetry link and its ability to deliver user data. The ability to significantly lower the error rates on the telemetry links enabled the use of packet telemetry and data compression. The infusion of the high performance codes for telemetry was enabled by the advent of digital processing, but it was limited to earth based systems supporting telemetry. The latest CCSDS space link protocol, Proximity-1 was developed in early 2000 to meet the needs of short-range, bi-directional, fixed or mobile radio links characterized by short time delays, moderate but not weak signals, and short independent sessions. Proximity-1 has been successfully deployed on both NASA and ESA missions at Mars and is planned to be utilized by all Mars missions in development. A new age has arisen, one that now provides the means to perform advanced digital processing in spacecraft systems enabling the use of improved transponders, digital correlators, and high performance forward error correcting codes for all communications links. Flight transponders utilizing digital technology have emerged and can efficiently provide the means to make the next leap in performance for space link communications. Field Programmable Gate Arrays (FPGAs) provide the capability to incorporate high performance forward error correcting codes implemented within software transponders providing improved performance in data transfer, ranging, link security, and time correlation. Given these synergistic technological breakthroughs, the time has come to take advantage of them in applying them to both on going (e.g., command, telemetry) and emerging (e.g., space link security, optical communication) space link applications. However one of the constraining factors within the Data Link Layer in realizing these performance gains is the lack of a generic transfer frame format and common supporting services amongst the existing CCSDS link layer protocols. Currently each of the four CCSDS link layer protocols (TM, TC, AOS, and Proximity-1) have unique formats and services which prohibits their reuse across the totality of all space link applications of CCSDS member space agencies. For example, Mars missions. These missions implement their proximity data link layer using the Proximity-1 frame format and the services it supports but is still required to support the direct from Earth (TC) protocols and the Direct To Earth (AOS/TM) protocols. The prime purpose of this paper, is to describe a new general purpose CCSDS Data Link layer protocol, the NGSLP that will provide the required services along with a common transfer frame format for all the CCSDS space links (ground to/from space and space to space links) targeted for emerging missions after a CCSDS agency-wide coordinated date. This paper will also describe related options that can be included for the Coding and Synchronization sub-layer of the Data Link layer to extend the capacities of the link and additionally provide an independence of the transfer frame sub-layer from the coding sublayer. This feature will provide missions the option of running either the currently performed synchronous coding and transfer frame data link or an asynchronous coding/frame data link, in which the transfer frame length is independent of the block size of the code. The benefits from the elimination of this constraint (frame synchronized to the code block) will simplify the interface between the transponder and the data handling equipment and reduce implementation costs and complexities. The benefits include: inclusion of encoders/decoders into transmitters and receivers without regard to data link protocols, providing the ability to insert latency sensitive messages into the link to support launch, landing/docking, telerobotics. and Variable Coded Modulation (VCM). In addition the ability to transfer different sized frames can provide a backup for delivering stored anomaly engineering data simultaneously with real time data, or relaying of frames from various sources onto a trunk line for delivery to Earth.

Kazz, Greg J.↗

Next Generation Big Data Storage for Long Space Missions

This paper presents the results of the HELIOS (Hardened Extremely Long Life In-formation Optical Storage) mission on the International Space Station (ISS) which tested a unique solution for the long-term storage and retrieval of data in space. For this mission Creative Technology (CTech) developed test media—termed WORF (Write Once, Read Forever)—to validate whether this patented technology will survive all critical parameters for harsh space-based environments including microgravity and ionizing radiation. The HELIOS experiment confirmed that the WORF media is impervious to ionizing radiation, microgravity, solar (plasma) eruptions, and the stress from 8 Gs of the launch including extreme temperature expo-sure. The principal results indicate that there has been no discernible degradation of the media after 8 months on the ISS as compared to a control set of media stored on the ground. This data validated the media’s survivability for harsh space environments for long-term and deep space missions. In addition to the space environment, we are confident that WORF technology can be used for data storage where space-related and other long-term or archival integrity is critical such as: geospatial collections from satellites; space weather archives; past, ongoing, and future space mission media and documentation files; the deep space Gate-way program; as well as Big Data applications such as the Vera C. Rubin astronomical observatory (formerly the LSST). WORF technology for the HELIOS experiment uses a proven archival media, redesigned, re-purposed and patented by CTech to store digital data for long periods, measured in decades and possibly centuries. The media stores standing waves embedded in a substrate that capture the precise col-ors or wavelengths projected onto the media. The colors represent numerical data, with each data location storing multiple superimposed wavelengths, which facilitate the storage of multiple data bytes (rather than just zeros and ones); advanced mathematical permutations allow for extremely large data density equal to or greater than contemporary data storage de-vices. These colors cannot fade or degrade over time since the standing waves are physically stabilized (fully oxidized) metallic silver; no dyes are embedded for this storage system, and silver ions resist micro-bacterial and fungal contamination

Rodney Grubbs↗