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DOE OSTI2021

Novel Gloeobacterales spp. from Diverse Environments across the Globe

Photosynthetic Cyanobacteria and their descendants are the only known organisms capable of oxygenic photosynthesis. Their metabolism permanently changed the Earth’s surface and the evolutionary trajectory of life, but little is known about their evolutionary history. Genomes of the Gloeobacterales, an order of deeply divergent photosynthetic Cyanobacteria, may hold clues about the evolutionary process. However, there are only three published genomes within this order, and it is difficult to make broad inferences based on such little data. Here, I describe five species within the Gloeobacterales retrieved from publicly available databases and examine their photosynthetic gene content and the environments in which Gloeobacterales genomes and 16S rRNA gene sequences are found. The Gloeobacterales contain reduced photosystems and inhabit cold, wet-rock, and low-light environments. They are likely present in low abundances due to their low growth rate. Future searches for Gloeobacterales should target these environments, and samples should be deeply sequenced to capture the low-abundance taxa. Publicly available databases contain undescribed taxa within the Gloeobacterales. However, searching through all available data with current methods is computationally expensive. Therefore, new methods must be developed to search for these and other evolutionarily important taxa. Once identified, these novel photosynthetic Cyanobacteria will help illuminate the origin and evolution of oxygenic photosynthesis. Early branching photosynthetic Cyanobacteria such as the Gloeobacterales may provide clues into the evolutionary history of oxygenic photosynthesis, but there are few genomes or cultured taxa from this order. Five new metagenome-assembled genomes suggest that members of the Gloeobacterales all contain reduced photosystems and lack genes associated with thylakoids and circadian rhythms. Their distribution suggests that they may thrive in environments that are marginal for other species, including wet-rock and cold environments. These traits may aid in the discovery and cultivation of novel species in this clade.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1986

Parallel structures in human and computer memory

If one thinks of our experiences as being recorded continuously on film, then human memory can be compared to a film library that is indexed by the contents of the film strips stored in it. Moreover, approximate retrieval cues suffice to retrieve information stored in this library. One recognizes a familiar person in a fuzzy photograph or a familiar tune played on a strange instrument. A computer memory that would allow a computer to recognize patterns and to recall sequences the way humans do is constructed. Such a memory is remarkably similiar in structure to a conventional computer memory and also to the neural circuits in the cortex of the cerebellum of the human brain. It is concluded that the frame problem of artificial intelligence could be solved by the use of such a memory if one were able to encode information about the world properly.

Kanerva, P.↗

NASA NTRS2000

MSU Antenna Pattern Data

The Microwave Sounding Unit (MSU) antenna pattern data for nine MSU Flight Models (FMs) have been successfully rescued from 22-year old 7-track and 9-track magnetic tapes and cartridges. These antenna pattern data were unpacked into user-friendly ASCII format, and are potentially useful for making antenna pattern corrections to MSU antenna temperatures in retrieving the true brightness temperatures. We also properly interpreted the contents of the data and show how to convert the measured antenna signal amplitude in volts into relative antenna power in dB with proper normalization. It is found that the data are of high quality with a 60-dB drop in the co-polarized antenna patterns from the central peak value to its side-lobe regions at scan angles beyond 30 deg. The unpacked antenna pattern data produced in this study provide a useful database for data users to correct the antenna side-lobe contribution to MSU measurements. All of the data are available to the scientific community on a single CD-ROM.

Mo, Tsan↗

NASA NTRS2011

Physical Validation of GPM Retrieval Algorithms Over Land: An Overview of the Mid-Latitude Continental Convective Clouds Experiment (MC3E)

The joint NASA Global Precipitation Measurement (GPM) -- DOE Atmospheric Radiation Measurement (ARM) Midlatitude Continental Convective Clouds Experiment (MC3E) was conducted from April 22-June 6, 2011, centered on the DOE-ARM Southern Great Plains Central Facility site in northern Oklahoma. GPM field campaign objectives focused on the collection of airborne and ground-based measurements of warm-season continental precipitation processes to support refinement of GPM retrieval algorithm physics over land, and to improve the fidelity of coupled cloud resolving and land-surface satellite simulator models. DOE ARM objectives were synergistically focused on relating observations of cloud microphysics and the surrounding environment to feedbacks on convective system dynamics, an effort driven by the need to better represent those interactions in numerical modeling frameworks. More specific topics addressed by MC3E include ice processes and ice characteristics as coupled to precipitation at the surface and radiometer signals measured in space, the correlation properties of rainfall and drop size distributions and impacts on dual-frequency radar retrieval algorithms, the transition of cloud water to rain water (e.g., autoconversion processes) and the vertical distribution of cloud water in precipitating clouds, and vertical draft structure statistics in cumulus convection. The MC3E observational strategy relied on NASA ER-2 high-altitude airborne multi-frequency radar (HIWRAP Ka-Ku band) and radiometer (AMPR, CoSMIR; 10-183 GHz) sampling (a GPM "proxy") over an atmospheric column being simultaneously profiled in situ by the University of North Dakota Citation microphysics aircraft, an array of ground-based multi-frequency scanning polarimetric radars (DOE Ka-W, X and C-band; NASA D3R Ka-Ku and NPOL S-bands) and wind-profilers (S/UHF bands), supported by a dense network of over 20 disdrometers and rain gauges, all nested in the coverage of a six-station mesoscale rawinsonde network. As an exploratory effort to examine land-surface emissivity impacts on retrieval algorithms, and to demonstrate airborne soil moisture retrieval capabilities, the University of Tennessee Space Institute Piper aircraft carrying the MAPIR L-band radiometer was also flown during the latter half of the experiment in coordination with the ER-2. The observational strategy provided a means to sample the atmospheric column in a redundant framework that enables inter-calibration and constraint of measured and retrieved precipitation characteristics such as particle size distributions, or water contents- all within the umbrella of "proxy" satellite measurements (i.e., the ER-2). Complimenting the precipitation sampling framework, frequent and coincident launches of atmospheric soundings (e.g., 4-8/day) then provided a much larger mesoscale view of the thermodynamic and winds environment, a data set useful for initializing cloud models. The datasets collected represent a variety cloud and precipitation types including isolated cumulus clouds, severe thunderstorms, mesoscale convective systems, and widespread regions of light to moderate stratiform precipitation. We will present the MC3E experiment design, an overview of operations, and a summary of preliminary results.

Petersen, Walter A.↗

NASA NTRS2020

Interpreting Exo-Planetary Atmospheres with the Next Generation Space-Based Telescope

We will soon have the technological capability to measure the atmospheric composition of temperate Earth-sized planets orbiting nearby stars. Interpreting these atmospheric signals poses a new challenge to planetary science. In contrast to jovian-like atmospheres, whose bulk compositions consist of hydrogen and helium, terrestrial planet atmospheres are likely comprised of high mean molecular weight secondary atmospheres, which have gone through a high degree of evolution. In order to understand the processes which affect a planetary atmosphere, I use early Mars as a case study. I leverage a combination of one-dimensional climate, photochemical and energy balance models in order to create one self-consistent model that closely matches currently available climate data. However, unlike in-situ observations from our own solar system, remote sensing techniques need to be developed and understood in order to accurately characterize exo-atmospheres. I describe the models used to create synthetic transit transmission observations, which includes models of transit spectroscopy and instrumental noise. Using these, I lay the framework for an information content-based approach to optimize our observations and maximize the retrievable information from exo-atmospheres. First I test the method on observing strategies of the well-studied, low-mean-molecular weight atmospheres of warm-Neptunes and hot Jupiters. Upon verifying the methodology, I finally address optimal observing strategies for temperate, high-mean-molecular weight atmospheres (Earths/super-Earths).

Batalha, Natasha↗

NASA NTRS2019

Developing a soil inversion model framework for regional permafrost monitoring

Currently, the community lacks capabilities to assess and monitor landscape scale permafrost active layer dynamics over large extents. To address this need, we developed a concept of a remote sensing based Soil Inversion Model for regional Permafrost (SIM-P) monitoring. The current SIM-P framework includes a satellite-based soil process model and a soil dielectric model. We are also working on incorporating a radar scattering model for Arctic tundra into the SIM-P framework. A unified soil parameterization scheme was developed to harmonize key soil thermal, hydraulic and dielectric parameters in the soil process and radar models that can be used in the joint soil-radar inversion framework. The soil parameter retrievals of the SIM-P framework include soil organic content (SOC) and active layer thickness (ALT). Initial tests of SIM-P using in-situ soil permittivity observations showed reasonable accuracy in predicting site-level SOC and soil temperature profiles at an Alaska tundra site and ALT in Arctic Alaska. SIM-P will be further tested using airborne P- and L-band radar data collected during NASA’s Arctic Boreal Vulnerability Experiment (ABoVE) to evaluate the sensitivity of longwave radar to active layer properties.

Miller, Charles E.↗

NASA NTRS2000

Cirrus Parameter Retrieval by Combined Analysis of Spectral Thermal Infrared and Lidar Sensing from Aircraft and Space

The distribution, radiative and microphysical parameters of cirrus clouds are an important factor for cloud effects on the global radiation balance and climate. Multispectral thermal infrared observation are the most significant method used to remote sense cirrus parameter from current and planned passive satellite observations. Passive sensing alone has the limitation that both the cloud radiative temperature, or height, and the spectral emissivity must be derived in the analysis. Factors such as multiple cloud laying, which is very common, are known to introduce ambiguities in results. The addition of lidar cloud height structure measurements significantly improves retrievals. Such active/passive observations have been applied from the NASA ER-2 high altitude remote sensing aircraft since 1983. Applications include the study of the effective effective particle size of cirrus and application toward remote sensing of the ice/water content of cirrus clouds in addition to radiative parameters. Limitations, accuracy and examples of retrievals are presented. In 1997 a space shuttle hitch hiker experiment was flown which included a new technology Infrared Spectral Imaging Radiometer and a laser altimeter for direct cloud height measurements. A 30 orbit data set to test global application of combined spectral infrared and laser height measurements were obtained. Initial results for cirrus analysis from the shuttle experiment will also be presented.

Spinhirne, James D.↗

NASA NTRS2021

Effect of volcanic emissions on clouds during the 2008 and 2018 Kilauea degassing events

Volcanic eruptions in otherwise clean environments are “natural experiments” wherein the effects of aerosol emissions on clouds and climate can be partitioned from meteorological variability and anthropogenic activities. In this work, we combined satellite retrievals, reanalysis products, and atmospheric modeling to analyze the mechanisms of aerosol–cloud interactions during two degassing events at the Kilauea volcano in 2008 and 2018. The eruptive nature of the 2008 and 2018 degassing events was distinct from long-term volcanic activity for Kilauea. Although previous studies assessed the modulation of cloud properties from the 2008 event, this is the first time such an analysis has been reported for the 2018 event and that multiple degassing events have been analyzed and compared at this location. Both events resulted in significant changes in cloud effective radius and cloud droplet number concentration that were decoupled from local meteorology and in line with an enhanced cloud albedo. However, it is likely that the effects of volcanic emissions on liquid water path and cloud fraction were largely offset by meteorological variability. Comparison of cloud anomalies between the two events suggested a threshold response of aerosol–cloud interactions to overcome meteorological effects, largely controlled by aerosol loading. In both events, the ingestion of aerosols within convective parcels enhanced the detrainment of condensate in the upper troposphere, resulting in deeper clouds than observed under pristine conditions. Accounting for ice nucleation on ash particles led to enhanced ice crystal concentrations at cirrus levels and a slight decrease in ice water content, improving the correlation of the model results with the satellite retrievals. Overall, aerosol loading, plume characteristics, and meteorology contributed to changes in cloud properties during the Kilauea degassing events.

Katherine H. Breen↗

NASA NTRS2015

Photopolarimetric Retrievals of Snow Properties

Polarimetric observations of snow surfaces, obtained in the 410-2264 nm range with the Research Scanning Polarimeter onboard the NASA ER-2 high-altitude aircraft, are analyzed and presented. These novel measurements are of interest to the remote sensing community because the overwhelming brightness of snow plagues aerosol and cloud retrievals based on airborne and spaceborne total reflection measurements. The spectral signatures of the polarized reflectance of snow are therefore worthwhile investigating in order to provide guidance for the adaptation of algorithms currently employed for the retrieval of aerosol properties over soil and vegetated surfaces. At the same time, the increased information content of polarimetric measurements allows for a meaningful characterization of the snow medium. In our case, the grains are modeled as hexagonal prisms of variable aspect ratios and microscale roughness, yielding retrievals of the grains' scattering asymmetry parameter, shape and size. The results agree with our previous findings based on a more limited data set, with the majority of retrievals leading to moderately rough crystals of extreme aspect ratios, for each scene corresponding to a single value of the asymmetry parameter.

aspect ratio↗

NASA NTRS2015

Global Precipitation Measurement (GPM) Mission: Precipitation Processing System (PPS) GPM Mission Gridded Text Products Provide Surface Precipitation Retrievals

In February 2015, the Global Precipitation Measurement (GPM) mission core satellite will complete its first year in space. The core satellite carries a conically scanning microwave imager called the GPM Microwave Imager (GMI), which also has 166 GHz and 183 GHz frequency channels. The GPM core satellite also carries a dual frequency radar (DPR) which operates at Ku frequency, similar to the Tropical Rainfall Measuring Mission (TRMM) Precipitation Radar, and a new Ka frequency. The precipitation processing system (PPS) is producing swath-based instantaneous precipitation retrievals from GMI, both radars including a dual-frequency product, and a combined GMIDPR precipitation retrieval. These level 2 products are written in the HDF5 format and have many additional parameters beyond surface precipitation that are organized into appropriate groups. While these retrieval algorithms were developed prior to launch and are not optimal, these algorithms are producing very creditable retrievals. It is appropriate for a wide group of users to have access to the GPM retrievals. However, for researchers requiring only surface precipitation, these L2 swath products can appear to be very intimidating and they certainly do contain many more variables than the average researcher needs. Some researchers desire only surface retrievals stored in a simple easily accessible format. In response, PPS has begun to produce gridded text based products that contain just the most widely used variables for each instrument (surface rainfall rate, fraction liquid, fraction convective) in a single line for each grid box that contains one or more observations.This paper will describe the gridded data products that are being produced and provide an overview of their content. Currently two types of gridded products are being produced: (1) surface precipitation retrievals from the core satellite instruments GMI, DPR, and combined GMIDPR (2) surface precipitation retrievals for the partner constellation satellites. Both of these gridded products are generated for a.25 degree x.25 degree hourly grid, which are packaged into daily ASCII (American Standard Code for Information Interchange) files that can downloaded from the PPS FTP (File Transfer Protocol) site. To reduce the download size, the files are compressed using the gzip utility.This paper will focus on presenting high-level details about the gridded text product being generated from the instruments on the GPM core satellite. But summary information will also be presented about the partner radiometer gridded product. All retrievals for the partner radiometer are done using the GPROF2014 algorithmusing as input the PPS generated inter-calibrated 1C product for the radiometer.

precipitation↗

DOE OSTI2026

Wake-Resolving Acoustic Tomography: Advances through Numerical Covariance Methods

Acoustic tomography offers path-integrated measurements of atmospheric velocity and temperature fluctuations with high spatial resolution. Classical implementations of time-dependent stochastic inversion rely on homogeneous, isotropic covariance models that are poorly suited to the anisotropic structure of wind turbine wakes. By directly estimating heterogeneous covariances from large-eddy simulations (LESs) into the time-dependent stochastic inversion operator, we relax implicit assumptions in the analytical models used historically. Retrievals using these LES-informed models improve agreement with true fields in variance, turbulent kinetic energy, and spectral content compared to analytical and precursor-based covariance models. The results indicate that LES-informed covariance models can enhance the accuracy of acoustic tomography retrievals in complex, anisotropic flows such as wind turbine wakes in some cases and highlight instances where analytical models still offer competitive performance, despite their simplifying assumptions.

17 WIND ENERGY↗

NASA NTRS2008

Precipitating Snow Retrievals from Combined Airborne Cloud Radar and Millimeter-Wave Radiometer Observations

An algorithm for retrieving snow over oceans from combined cloud radar and millimeter-wave radiometer observations is developed. The algorithm involves the use of physical models to simulate cloud radar and millimeter-wave radiometer observations from basic atmospheric variables such as hydrometeor content, temperature, and relative humidity profiles and is based on an optimal estimation technique to retrieve these variables from actual observations. A high-resolution simulation of a lake-effect snowstorm by a cloud-resolving model is used to test the algorithm. That is, synthetic observations are generated from the output of the cloud numerical model, and the retrieval algorithm is applied to the synthetic data. The algorithm performance is assessed by comparing the retrievals with the reference variables used in synthesizing the observations. The synthetic observation experiment indicates good performance of the retrieval algorithm. The algorithm is also applied to real observations from the Wakasa Bay field experiment that took place over the Sea of Japan in January and February 2003. The application of the retrieval algorithm to data from the field experiment yields snow estimates that are consistent with both the cloud radar and radiometer observations.

Grecu, Mircea↗

DOE OSTI2025

Atlas-UI-3

SAND2025-14754O Atlas-UI-3 is the third iteration of the LLM chat user interface called Atlas. The tool does not share code with previous versions. It supports chat with large language models (LLMs), connects to retrieval-augmented generation (RAG) servers, features a marketplace/store for model and content providers (MCP), and enables tool calling. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Melander, Darryl [Sandia National Lab. (SNL-CA), L↗

NASA NTRS1979

Remote sensing of atmospheric water vapor, liquid water, and wind speed at the ocean surface by passive microwave techniques from the Nimbus 5 satellite

The microwave brightness temperature measurements for Nimbus 5 electrically scanned microwave radiometer (ESMR) and Nimbus-E microwave spectrometer (NEMS) are used to retrieve the atmospheric water vapor, liquid water, and wind speed by a quasi-statistical retrieval technique. It is shown that the brightness temperature can be utilized to yield these parameters under various weather conditions. Observations at 19.35, 22.235, and 31.4 GHz were input to the regression equations. The retrieved values of these parameters for portions of two Nimbus 5 orbits are presented. Then comparison between the retrieved parameters and the available observations on the total water vapor content and the surface wind speed are made.

Chang, A. T. C.↗

NASA NTRS1990

Atmospheric water vapour over oceans from SSM/I measurements

A statistical retrieval technique is developed to derive the atmospheric water vapor column content from the Special Sensor Microwave/Imager (SSM/I) measurements. The radiometer signals are simulated by means of radiative-transfer calculations for a large set of atmospheric/oceanic situations. These simulated responses are subsequently summarized by multivariate analyses, giving water-vapor coefficients and error estimates. Radiative-transfer calculations show that the SSM/I microwave imager can detect atmospheric water vapor structures with an accuracy from 0.145 to 0.17 g/sq cm. The accuracy of the method is confirmed by globally distributed match-ups with radiosonde measurements.

Schluessel, Peter↗

NASA NTRS2004

Neural network uncertainty assessment using Bayesian statistics: a remote sensing application

Neural network (NN) techniques have proved successful for many regression problems, in particular for remote sensing; however, uncertainty estimates are rarely provided. In this article, a Bayesian technique to evaluate uncertainties of the NN parameters (i.e., synaptic weights) is first presented. In contrast to more traditional approaches based on point estimation of the NN weights, we assess uncertainties on such estimates to monitor the robustness of the NN model. These theoretical developments are illustrated by applying them to the problem of retrieving surface skin temperature, microwave surface emissivities, and integrated water vapor content from a combined analysis of satellite microwave and infrared observations over land. The weight uncertainty estimates are then used to compute analytically the uncertainties in the network outputs (i.e., error bars and correlation structure of these errors). Such quantities are very important for evaluating any application of an NN model. The uncertainties on the NN Jacobians are then considered in the third part of this article. Used for regression fitting, NN models can be used effectively to represent highly nonlinear, multivariate functions. In this situation, most emphasis is put on estimating the output errors, but almost no attention has been given to errors associated with the internal structure of the regression model. The complex structure of dependency inside the NN is the essence of the model, and assessing its quality, coherency, and physical character makes all the difference between a blackbox model with small output errors and a reliable, robust, and physically coherent model. Such dependency structures are described to the first order by the NN Jacobians: they indicate the sensitivity of one output with respect to the inputs of the model for given input data. We use a Monte Carlo integration procedure to estimate the robustness of the NN Jacobians. A regularization strategy based on principal component analysis is proposed to suppress the multicollinearities in order to make these Jacobians robust and physically meaningful.

Neural Networks (Computer)↗

NASA NTRS2008

Generating Vegetation Leaf Area Index Earth System Data Record from Multiple Sensors: Theory - Part 1

The generation of multi-decade long Earth System Data Records (ESDRs) of Leaf Area Index (LAI) and Fraction of Photosynthetically Active Radiation absorbed by vegetation (FPAR) from remote sensing measurements of multiple sensors is key to monitoring long-term changes in vegetation due to natural and anthropogenic influences. Challenges in developing such ESDRs include problems in remote sensing science (modeling of variability in global vegetation, scaling, atmospheric correction) and sensor hardware (differences in spatial resolution, spectral bands, calibration, and information content). In this paper, we develop a physically based approach for deriving LAI and FPAR products from the Advanced Very High Resolution Radiometer (AVHRR) data that are of comparable quality to the Moderate resolution Imaging Spectroradiometer (MODIS) LAI and FPAR products, thus realizing the objective of producing a long (multi-decadal) time series of these products. The approach is based on the radiative transfer theory of canopy spectral invariants which facilitates parameterization of the canopy spectral bidirectional reflectance factor (BRF). The methodology permits decoupling of the structural and radiometric components and obeys the energy conservation law. The approach is applicable to any optical sensor, however, it requires selection of sensor-specific values of configurable parameters, namely, the single scattering albedo and data uncertainty. According to the theory of spectral invariants, the single scattering albedo is a function of the spatial scale, and thus, accounts for the variation in BRF with sensor spatial resolution. Likewise, the single scattering albedo accounts for the variation in spectral BRF with sensor bandwidths. The second adjustable parameter is data uncertainty, which accounts for varying information content of the remote sensing measurements, i.e., Normalized Difference Vegetation Index (NDVI, low information content), vs. spectral BRF (higher information content). Implementation of this approach indicates good consistency in LAI values retrieved from NDVI (AVHRRmode) and spectral BRF (MODIS-mode). Specific details of the implementation and evaluation of the derived products are detailed in the second part of this two-paper series.

Ganguly, Sangram↗

NASA NTRS2018

The Challenges of Measuring Methane from Space with a Lidar

The global and regional quantification of methane fluxes and identification of its sources and sinks has been highlighted as one of the goals of the NASA 2017 Earth Science Decadal Survey. Detecting methane from space and airborne platforms with an active (laser) remote sensing instrument presents several unique technology and measurement challenges. The instrument must have a single frequency, narrow-linewidth light source, and photon-sensitive detector at the right spectral region to make continuous measurements from orbit, day and night, all seasons and at all latitudes. It must have a high signal to noise ratio and must be relatively immune to biases from aerosol/cloud scattering, spectroscopic and meteorological data uncertainties, and instrument systematic errors. At Goddard Space Flight Center (GSFC), in collaboration with industry, we have developed an airborne instrument to measure methane. Our instrument is a nadir-viewing lidar that uses Integrated Path Differential Absorption (IPDA), to measure methane near 1.65 µm. We sample the absorption line using multiple wavelengths from a narrow linewidth laser source and a sensitive photodetector. This measurement approach provides maximum information content about the CH4 column, and minimizes biases in the XCH4 retrieval. In this paper, we will review our progress to date and discuss the technology challenges, options and tradeoffs to measure methane from space and airborne platforms.

airborne instruments↗