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NASA NTRS1995

Magnetic clouds, helicity conservation, and intrinsic scale flux ropes

An intrinsic-scale flux-rope model for interplanetary magnetic clouds, incorporating conservation of magnetic helicity, flux and mass is found to adequately explain clouds' average thermodynamic and magnetic properties. In spite their continuous expansion as they balloon into interplanetary space, magnetic clouds maintain high temperatures. This is shown to be due to magnetic energy dissipation. The temperature of an expanding cloud is shown to pass through a maximum above its starting temperature if the initial plasma beta in the cloud is less than 2/3. Excess magnetic pressure inside the cloud is not an important driver of the expansion as it is almost balanced by the tension in the helical field lines. It is conservation of magnetic helicity and flux that requires that clouds expand radially as they move away from the Sun. Comparison with published data shows good agreement between measured cloud properties and theory. Parameters determined from theoretical fits to the data, when extended back to the Sun, are consistent with the origin of interplanetary magnetic clouds in solar filament eruptions. A possible extension of the heating mechanism discussed here to heating of the solar corona is discussed.

Kumar, A.↗

NASA NTRS1986

A Conservation Treatment of Zonal Boundaries for Euler Equation Calculations

Finite-difference calculations require the generation of a grid for the region of interest. A zonal approach, wherein the given region is subdivided into zones and the grid for each zone is generated independently, makes the grid-generation process for complicated topologies and for regions requiring selective grid refinement a fairly simple task. This approach results in new boundaries within the given region, that is, zonal boundaries at the interfaces of the various zones. The zonal-boundary scheme (the integration scheme used to update the points on the zonal boundary) for the Euler equations must be conservative, accurate, stable, and applicable to general curvilinear coordinate systems. A zonal-boundary scheme with these desirable properties is developed in this study. The scheme is designed for explicit, first-order-accurate integration schemes but can be modified to accommodate second-order-accurate explicit and implicit integration schemes. Results for inviscid flow, including supersonic flow over a cylinder, blast-wave diffraction by a ramp, and one-dimensional shock-tube flow are obtained on zonal grids. The conservative nature of the zonal-boundary scheme permits the smooth transition of the discontinuities associated with these flows from one zone to another. The calculations also demonstrate the continuity of contour lines across zonal boundaries that can be achieved with the present zonal scheme.

Rai, Man Mohan↗

NASA NTRS2000

Scale-Invariant Forms of Conservation Equations in Reactive Fields and a Modified Hydro-Thermo-Diffusive Theory of Laminar Flames

A scale-invariant model of statistical mechanics is applied to present invariant forms of mass, energy, linear, and angular momentum conservation equations in reactive fields. The resulting conservation equations at molecular-dynamic scale are solved by the method of large activation energy asymptotics to describe the hydro-thermo-diffusive structure of laminar premixed flames. The predicted temperature and velocity profiles are in agreement with the observations. Also, with realistic physico-chemical properties and chemical-kinetic parameters for a single-step overall combustion of stoichiometric methane-air premixed flame, the laminar flame propagation velocity of 42.1 cm/s is calculated in agreement with the experimental value.

Sohrab, Siavash H.↗

NASA NTRS2001

A High-Order Finite Spectral Volume Method for Conservation Laws on Unstructured Grids

A time accurate, high-order, conservative, yet efficient method named Finite Spectral Volume (FSV) is developed for conservation laws on unstructured grids. The concept of a 'spectral volume' is introduced to achieve high-order accuracy in an efficient manner similar to spectral element and multi-domain spectral methods. In addition, each spectral volume is further sub-divided into control volumes (CVs), and cell-averaged data from these control volumes is used to reconstruct a high-order approximation in the spectral volume. Riemann solvers are used to compute the fluxes at spectral volume boundaries. Then cell-averaged state variables in the control volumes are updated independently. Furthermore, TVD (Total Variation Diminishing) and TVB (Total Variation Bounded) limiters are introduced in the FSV method to remove/reduce spurious oscillations near discontinuities. A very desirable feature of the FSV method is that the reconstruction is carried out only once, and analytically, and is the same for all cells of the same type, and that the reconstruction stencil is always non-singular, in contrast to the memory and CPU-intensive reconstruction in a high-order finite volume (FV) method. Discussions are made concerning why the FSV method is significantly more efficient than high-order finite volume and the Discontinuous Galerkin (DG) methods. Fundamental properties of the FSV method are studied and high-order accuracy is demonstrated for several model problems with and without discontinuities.

Wang, Z. J.↗

NASA NTRS2001

A Space-Time Conservation Element and Solution Element Method for Solving the Two- and Three-Dimensional Unsteady Euler Equations Using Quadrilateral and Hexahedral Meshes

In this paper, we report a version of the Space-Time Conservation Element and Solution Element (CE/SE) Method in which the 2D and 3D unsteady Euler equations are simulated using structured or unstructured quadrilateral and hexahedral meshes, respectively. In the present method, mesh values of flow variables and their spatial derivatives are treated as independent unknowns to be solved for. At each mesh point, the value of a flow variable is obtained by imposing a flux conservation condition. On the other hand, the spatial derivatives are evaluated using a finite-difference/weighted-average procedure. Note that the present extension retains many key advantages of the original CE/SE method which uses triangular and tetrahedral meshes, respectively, for its 2D and 3D applications. These advantages include efficient parallel computing ease of implementing non-reflecting boundary conditions, high-fidelity resolution of shocks and waves, and a genuinely multidimensional formulation without using a dimensional-splitting approach. In particular, because Riemann solvers, the cornerstones of the Godunov-type upwind schemes, are not needed to capture shocks, the computational logic of the present method is considerably simpler. To demonstrate the capability of the present method, numerical results are presented for several benchmark problems including oblique shock reflection, supersonic flow over a wedge, and a 3D detonation flow.

Zhang, Zeng-Chan↗

NASA NTRS2002

Spectral (Finite) Volume Method for Conservation Laws on Unstructured Grids II: Extension to Two Dimensional Scalar Equation

The framework for constructing a high-order, conservative Spectral (Finite) Volume (SV) method is presented for two-dimensional scalar hyperbolic conservation laws on unstructured triangular grids. Each triangular grid cell forms a spectral volume (SV), and the SV is further subdivided into polygonal control volumes (CVs) to supported high-order data reconstructions. Cell-averaged solutions from these CVs are used to reconstruct a high order polynomial approximation in the SV. Each CV is then updated independently with a Godunov-type finite volume method and a high-order Runge-Kutta time integration scheme. A universal reconstruction is obtained by partitioning all SVs in a geometrically similar manner. The convergence of the SV method is shown to depend on how a SV is partitioned. A criterion based on the Lebesgue constant has been developed and used successfully to determine the quality of various partitions. Symmetric, stable, and convergent linear, quadratic, and cubic SVs have been obtained, and many different types of partitions have been evaluated. The SV method is tested for both linear and non-linear model problems with and without discontinuities.

Wang, Z. J.↗

NASA NTRS2003

Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation

Evolutionary changes in transcriptional regulation undoubtedly play an important role in creating morphological diversity. However, there is little information about the evolutionary dynamics of cis-regulatory sequences. This study examines the functional consequence of evolutionary changes in the Endo16 promoter of sea urchins. The Endo16 gene encodes a large extracellular protein that is expressed in the endoderm and may play a role in cell adhesion. Its promoter has been characterized in exceptional detail in the purple sea urchin, Strongylocentrotus purpuratus. We have characterized the structure and function of the Endo16 promoter from a second sea urchin species, Lytechinus variegatus. The Endo16 promoter sequences have evolved in a strongly mosaic manner since these species diverged approximately 35 million years ago: the most proximal region (module A) is conserved, but the remaining modules (B-G) are unalignable. Despite extensive divergence in promoter sequences, the pattern of Endo16 transcription is largely conserved during embryonic and larval development. Transient expression assays demonstrate that 2.2 kb of upstream sequence in either species is sufficient to drive GFP reporter expression that correctly mimics this pattern of Endo16 transcription. Reciprocal cross-species transient expression assays imply that changes have also evolved in the set of transcription factors that interact with the Endo16 promoter. Taken together, these results suggest that stabilizing selection on the transcriptional output may have operated to maintain a similar pattern of Endo16 expression in S. purpuratus and L. variegatus, despite dramatic divergence in promoter sequence and mechanisms of transcriptional regulation.

NASA Discipline Evolutionary Biology↗

NASA NTRS2004

Conservative Analytical Collision Probability for Design of Orbital Formations

The literature offers a number of approximations for analytically and/or efficiently computing the probability of collision between two space objects. However, only one of these techniques is a completely analytical approximation that is suitable for use in the preliminary design phase, when it is more important to quickly analyze a large segment of the trade space than it is to precisely compute collision probabilities. Unfortunately, among the types of formations that one might consider, some combine a range of conditions for which this analytical method is less suitable. This work proposes a simple, conservative approximation that produces reasonable upper bounds on the collision probability in such conditions. Although its estimates are much too conservative under other conditions, such conditions are typically well suited for use of the existing method.

Carpenter, J. Russell↗

NASA NTRS1994

Three-dimensional structure of Schistosoma japonicum glutathione S-transferase fused with a six-amino acid conserved neutralizing epitope of gp41 from HIV

The 3-dimensional crystal structure of glutathione S-transferase (GST) of Schistosoma japonicum (Sj) fused with a conserved neutralizing epitope on gp41 (glycoprotein, 41 kDa) of human immunodeficiency virus type 1 (HIV-1) (Muster T et al., 1993, J Virol 67:6642-6647) was determined at 2.5 A resolution. The structure of the 3-3 isozyme rat GST of the mu gene class (Ji X, Zhang P, Armstrong RN, Gilliland GL, 1992, Biochemistry 31:10169-10184) was used as a molecular replacement model. The structure consists of a 4-stranded beta-sheet and 3 alpha-helices in domain 1 and 5 alpha-helices in domain 2. The space group of the Sj GST crystal is P4(3)2(1)2, with unit cell dimensions of a = b = 94.7 A, and c = 58.1 A. The crystal has 1 GST monomer per asymmetric unit, and 2 monomers that form an active dimer are related by crystallographic 2-fold symmetry. In the binding site, the ordered structure of reduced glutathione is observed. The gp41 peptide (Glu-Leu-Asp-Lys-Trp-Ala) fused to the C-terminus of Sj GST forms a loop stabilized by symmetry-related GSTs. The Sj GST structure is compared with previously determined GST structures of mammalian gene classes mu, alpha, and pi. Conserved amino acid residues among the 4 GSTs that are important for hydrophobic and hydrophilic interactions for dimer association and glutathione binding are discussed.

Schistosoma japonicum/enzymology/genetics/immunolo↗

NASA NTRS2005

Conservation of Fold and Topology of Functional Elements in Thiamin Pyrophosphate Enzymes

Thiamin pyrophosphate (TPP)-dependent enzymes are a highly divergent family of proteins binding both TPP and metal ions. They perform decarboxylation-hydroxyaldehydes. Prior -ketoacids and of a common - (O=)C-C(OH)- fragment of to knowledge of three-dimensional structures of these enzmes, the GDGY25-30NN sequence was used to identify these enzymes. Subsequently, a number of structural studies on those enzymes revealed multi-subunit organization and the features of the two duplicate cofactor binding sites. Analyzing the structures of 44 structurally known enzymes, we found that the common structure of these enzymes is reduced to 180-220 amino acid long fragments of two PP and two PYR domains that form the [PP:PYR]2 binding center of two cofactor molecules. The structures of PP and PYR are arranged in a similar fold-sheet with triplets of helices on both sides.Dconsisting of a six-stranded Residues surrounding the cofactors are not strictly conserved, but they provide the same interatomic contacts required for the catalytic functions that these enzymes perform while maintaining interactive structural integrity. These structural and functional amino acids are topological counterparts located in the same positions of the conserved fold of sets of PP and PYR domains. Additional parallels include short fragments of sequences that link these amino acids to the fold and function. This report on the structural commonalities amongst TPP dependent enzymes is thought to contribute new approaches to annotation that may assist in advancing the functional proteomics of TPP dependent enzymes, and trace their complexity within evolutionary context.

Dominiak, P.↗

NASA NTRS1999

Space-Time Conservation Element and Solution Element Method Being Developed

The engineering research and design requirements of today pose great computer-simulation challenges to engineers and scientists who are called on to analyze phenomena in continuum mechanics. The future will bring even more daunting challenges, when increasingly complex phenomena must be analyzed with increased accuracy. Traditionally used numerical simulation methods have evolved to their present state by repeated incremental extensions to broaden their scope. They are reaching the limits of their applicability and will need to be radically revised, at the very least, to meet future simulation challenges. At the NASA Lewis Research Center, researchers have been developing a new numerical framework for solving conservation laws in continuum mechanics, namely, the Space-Time Conservation Element and Solution Element Method, or the CE/SE method. This method has been built from fundamentals and is not a modification of any previously existing method. It has been designed with generality, simplicity, robustness, and accuracy as cornerstones. The CE/SE method has thus far been applied in the fields of computational fluid dynamics, computational aeroacoustics, and computational electromagnetics. Computer programs based on the CE/SE method have been developed for calculating flows in one, two, and three spatial dimensions. Results have been obtained for numerous problems and phenomena, including various shock-tube problems, ZND detonation waves, an implosion and explosion problem, shocks over a forward-facing step, a blast wave discharging from a nozzle, various acoustic waves, and shock/acoustic-wave interactions. The method can clearly resolve shock/acoustic-wave interactions, wherein the difference of the magnitude between the acoustic wave and shock could be up to six orders. In two-dimensional flows, the reflected shock is as crisp as the leading shock. CE/SE schemes are currently being used for advanced applications to jet and fan noise prediction and to chemically reacting flows.

Chang, Sin-Chung↗

NASA NTRS2004

Conservative Analytical Collision Probabilities for Orbital Formation Flying

Carpenter, J. Russell↗

NASA NTRS2008

The a(3) Scheme--A Fourth-Order Space-Time Flux-Conserving and Neutrally Stable CESE Solver

The CESE development is driven by a belief that a solver should (i) enforce conservation laws in both space and time, and (ii) be built from a non-dissipative (i.e., neutrally stable) core scheme so that the numerical dissipation can be controlled effectively. To initiate a systematic CESE development of high order schemes, in this paper we provide a thorough discussion on the structure, consistency, stability, phase error, and accuracy of a new 4th-order space-time flux-conserving and neutrally stable CESE solver of an 1D scalar advection equation. The space-time stencil of this two-level explicit scheme is formed by one point at the upper time level and three points at the lower time level. Because it is associated with three independent mesh variables (the numerical analogues of the dependent variable and its 1st-order and 2ndorder spatial derivatives, respectively) and three equations per mesh point, the new scheme is referred to as the a(3) scheme. Through the von Neumann analysis, it is shown that the a(3) scheme is stable if and only if the Courant number is less than 0.5. Moreover, it is established numerically that the a(3) scheme is 4th-order accurate.

Chang, Sin-Chung↗

NASA NTRS2010

Use of Land Use Land Cover Change Mapping Products in Aiding Coastal Habitat Conservation and Restoration Efforts of the Mobile Bay NEP

The Mobile Bay region has undergone significant land use land cover change (LULC) over the last 35 years, much of which is associated with urbanization. These changes have impacted the region s water quality and wildlife habitat availability. In addition, much of the region is low-lying and close to the Gulf, which makes the region vulnerable to hurricanes, climate change (e.g., sea level rise), and sometimes man-made disasters such as the Deepwater Horizon (DWH) oil spill. Land use land cover change information is needed to help coastal zone managers and planners to understand and mitigate the impacts of environmental change on the region. This presentation discusses selective results of a current NASA-funded project in which Landsat data over a 34-year period (1974-2008) is used to produce, validate, refine, and apply land use land cover change products to aid coastal habitat conservation and restoration needs of the Mobile Bay National Estuary Program (MB NEP). The project employed a user defined classification scheme to compute LULC change mapping products for the entire region, which includes the majority of Mobile and Baldwin counties. Additional LULC change products have been computed for select coastal HUC-12 sub-watersheds adjacent to either Mobile Bay or the Gulf of Mexico, as part of the MB NEP watershed profile assessments. This presentation will include results of additional analyses of LULC change for sub-watersheds that are currently high priority areas, as defined by MB NEP. Such priority sub-watersheds include those that are vulnerable to impacts from the DWH oil spill, as well as sub-watersheds undergoing urbanization. Results demonstrating the nature and permanence of LULC change trends for these higher priority sub-watersheds and results characterizing change for the entire 34-year period and at approximate 10-year intervals across this period will also be presented. Future work will include development of value-added coastal habitat quality assessment products that will be used by the MB NEP and its partners in the planning of coastal conservation and restoration activities.

Spruce, Joseph P.↗

NASA NTRS2001

Educating Astronauts About Conservation Biology

This article reviews the training of astronauts in the interdisciplinary work of conservation biology. The primary responsibility of the conservation biologist at NASA is directing and supporting the photography of the Earth and maintaining the complete database of the photographs. In order to perform this work, the astronauts who take the pictures must be educated in ecological issues.

Robinson, Julie A.↗

NASA NTRS2012

Data Acquisition, Management, and Analysis in Support of the Audiology and Hearing Conservation and the Orbital Debris Program Office

My internship at Johnson Space Center, Houston TX comprised of working simultaneously in the Space Life Science Directorate (Clinical Services Branch, SD3) in Audiology and Hearing Conservation and in the Astromaterials Research and Exploration Sciences Directorate in the Orbital Debris Program Office (KX). The purpose of the project done to support the Audiology and Hearing Conservation Clinic (AuHCon) is to organize and analyze auditory test data that has been obtained from tests conducted onboard the International Space Station (ISS) and in Johnson Space Center's clinic. Astronauts undergo a special type of auditory test called an On-Orbit Hearing Assessment (OOHA), which monitors hearing function while crewmembers are exposed to noise and microgravity during long-duration spaceflight. Data needed to be formatted to assist the Audiologist in studying, analyzing and reporting OOHA results from all ISS missions, with comparison to conventional preflight and post-flight audiometric test results of crewmembers. Orbital debris is the #1 threat to manned spacecraft; therefore NASA is investing in different measurement techniques to acquire information on orbital debris. These measurements are taken with telescopes in different parts of the world to acquire brightness variations over time, from which size, rotation rates and material information can be determined for orbital debris. Currently many assumptions are taken to resolve size and material from observed brightness, therefore a laboratory (Optical Measurement Center) is used to simulate the space environment and acquire information of known targets suited to best model the orbital debris population. In the Orbital Debris Program Office (ODPO) telescopic data were acquired and analyzed to better assess the orbital debris population.

Dicken, Todd↗

NASA NTRS2013

High-Order Entropy Stable Finite Difference Schemes for Nonlinear Conservation Laws: Finite Domains

Developing stable and robust high-order finite difference schemes requires mathematical formalism and appropriate methods of analysis. In this work, nonlinear entropy stability is used to derive provably stable high-order finite difference methods with formal boundary closures for conservation laws. Particular emphasis is placed on the entropy stability of the compressible Navier-Stokes equations. A newly derived entropy stable weighted essentially non-oscillatory finite difference method is used to simulate problems with shocks and a conservative, entropy stable, narrow-stencil finite difference approach is used to approximate viscous terms.

Fisher, Travis C.↗

NASA NTRS2014

Myanmar Ecological Forecasting: Utilizing NASA Earth Observations to Monitor, Map, and Analyze Mangrove Forests in Myanmar for Enhanced Conservation

Mangroves supply many essential environmental amenities, such as preventing soil erosion, filtering water pollution, and protecting shorelines from harmful waves, floods, storms and winds. The Mangroves in Myanmar not only provide citizens with a food source, but they also offer firewood, charcoal, and construction materials. The depletion of mangroves is threatening more than the biodiversity however; Myanmar's fiscal livelihood is also in harm's way. Mangroves are valued at $100,000 to $277,000 per square kilometer and if managed in a sustainable fashion, can infuse constant income to the emerging Myanmarese economy. This study analyzed three coastline regions, the Ayeyarwady Delta, Rakhine and Tanintharyi, and mapped the spatial extent of mangrove forest during the dry season in 2000 and 2013. The classifications were derived from Landsat 7 Enhanced Thematic Mapper Plus (ETM+) and Landsat 8 Operation Land Imager (OLI) imagery, as well as the Terra Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) digital elevation model information. This data was atmospherically corrected, mosaicked, masked and classified in ENVI, followed by ArcGIS to perform raster calculations and create final products. Forest degradation collected from 2000 to 2013 was later used to forecast the density and health of Mangroves in the year 2030. These results were subsequently presented to project partners Dr. Peter Leimgruber and Ellen Aiken at the Smithsonian Conservation Biology Institute in Front Royal, VA. After the presentation of the project to the partners, these organizations formally passed on to the Myanmar Ministry of Environment, Conservation and Forestry for policy makers and forest managers to utilize in order to protect the Myanmar mangrove ecosystem while sustaining a healthy economy.

Weber, Samuel J.↗