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At least 181 records · Page 10

Coastal bacteria and protists assimilate viral carbon and nitrogen

Abstract Free viruses are the most abundant type of biological particles in the biosphere, but the lack of quantitative knowledge about their consumption by heterotrophic protists and bacterial degradation has hindered the inclusion of virovory in biogeochemical models. Using isotope-labeled viruses added to three independent microcosm experiments with natural microbial communities followed by isotope measurements with single-cell resolution and flow cytometry, we quantified the flux of viral C and N into virovorous protists and bacteria and compared the loss of viruses due to abiotic vs biotic factors. We found that some protists can obtain most of their C and N requirements from viral particles and that viral C and N get incorporated into bacterial biomass. We found that bacteria and protists were responsible for increasing the daily removal rate of viruses by 33% to 85%, respectively, compared to abiotic processes alone. Our laboratory incubation experiments showed that abiotic processes removed roughly 50% of the viruses within a week, and adding biotic processes led to a removal of 83% to 91%. Our data provide direct evidence for the transfer of viral C and N back into the microbial loop through protist grazing and bacterial breakdown, representing a globally significant flux that needs to be investigated further to better understand and predictably model the C and N cycles of the hydrosphere.

59 BASIC BIOLOGICAL SCIENCES↗

Coastal Cloud Chemistry during EPCAPE Field Campaign Report

For this campaign, Principal Investigator Markus Petters deployed a suite of instruments inside Lynn Russell’s container that was sited at Mt. Soledad during the Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) campaign. Funding for this activity was provided by National Science Foundation Award 2410536. The instrument rack (Figure 1) included a differential mobility analyzer, a condensation particle counter, a portable optical particle spectrometer, and a continuous flow diffusion cloud condensation nuclei counter (CCN). The instruments sampled from a counterflow virtual impactor (CVI) inlet and an isokinetic inlet. The measurements provided aerosol size distribution, size-resolved CCN activity, and denuded versus undenuded CCN activity of aerosols and cloud drop residuals.

54 ENVIRONMENTAL SCIENCES↗

Contrasting patterns of sequence variation in steelhead populations reflect distinct evolutionary processes

Abstract Multiple evolutionary processes influence genome‐wide allele frequencies and quantifying effects of genetic drift, and multiple forms of selection remain challenging in natural populations. Here, we investigate variation at major effect loci in contrast to patterns of neutral drift across a wide collection of steelhead ( Oncorhynchus mykiss ) populations that have declined in abundance due to anthropogenic impacts. Whole‐genome resequencing of 74 populations of steelhead revealed genome‐wide patterns (~8 million SNPs) consistent with expected neutral population structure. However, allelic variation at major effect loci associated with adult migration timing (chromosome 28: GREB1L / ROCK1 ) and age at maturity (chromosome 25: SIX6 ) reflected how selection has acted on phenotypic variation in contrast with neutral structure. Variation at major effect loci was influenced by evolutionary processes with differing signals between the strongly divergent Coastal and Inland lineages, while allele frequencies within and among populations within the Inland lineage have been driven by local natural selection as well as recent anthropogenic influences. Recent anthropogenic effects appeared to have influenced the frequency of major effect alleles including artificial selection for specific traits in hatchery stocks with subsequent gene flow into natural populations. Selection from environmental factors at various scales has also likely influenced variation for major effect alleles. These results reveal evolutionary mechanisms that influence allele frequencies at major effect loci that are critical for conservation of phenotypic traits and life history variation of this protected species.

Willis, Stuart↗

Surface winds over West Antarctica

Five winter months (April-August 1988) of thermal infrared satellite images were examined to investigate the occurrence of dark (warm) signatures across the Ross Ice Shelf in the Antarctic continent. These features are inferred to be generated by katabatic winds that descend from southern Marie Byrd Land and then blow horizontally across the ice shelf. Significant mass is added to this airstream by katabatic winds blowing from the major glaciers that flow through the Transantarctic Mountains from East Antarctica. These negatively buoyant katabatic winds can reach the northwestern edge of the shelf - a horizontal propagation distance of up to 1,000 km - 14 percent of the time. Where the airstream crosses from the ice shelf to the ice-covered Ross Sea, a prominent coastal polynya is formed. Because the downslope buoyancy force is near zero over the Ross Ice Shelf, the northwestward propagation of the katabatic air mass requires pressure gradient support. The study shows that the extended horizontal propagation of this atmospheric density current occurred in conjunction with the passage of synoptic cyclones over the southern Amundsen Sea. These cyclones can strengthen the pressure gradient in the interior of West Antarctica and make the pressure field favorable for northwestward movement of the katabatic winds from West Antarctica across the ice shelf in a geostrophic direction. The glacier winds from East Antarctica are further accelerated by the synoptic pressure gradient, usually undergo abrupt adjustment beyond the exit to the glacier valley, and merge into the mountain-parallel katabatic air mass.

Bromwich, David↗

A Low-Flow Marine Hydrokinetic Turbine for a Floating Unmanned Mobile Platform

Design and fabrication of a marine hydrokinetic turbine for deployment from a floating unmanned autonomous mobile catamaran platform is described. The objective is to develop a low-flow current turbine for deployment from a floating mobile catamaran USV platform. An undershot water wheel has been selected as the turbine of choice and a WAM-V 16 catamaran has been selected as the USV platform. The concept of operation is that the USV platform would autonomously seek and navigate to a coastal location where coastal or tidal currents may be present, anchor at the location, and deploy the turbine to harness the current energy, convert it to electricity and store it in onboard battery banks. The prototype system being developed is targeted at supporting development of self-powered autonomous mobile recharge stations for unmanned aerial vehicles in coastal zones. Once implemented on the vehicle, open water tests are planned for a range of environmental conditions, involving tidal and coastal currents, and system configurations. The status of the ongoing effort will be discussed.

16 TIDAL AND WAVE POWER↗

Model simulations of Plum Island Ecosystems LTER low marsh site using ELM-PFLOTRAN

Model simulations using the E3SM Land Model (ELM) coupled to the PFLOTRAN reactive transport model via the Alquimia interface. The simulations were conducted for a tidal salt marsh at the Plum Island Ecosystems LTER near Rowley, Massachusetts, USA. Model simulations were forced using site-specific tidal cycles and salinity, and the simulations used a biogeochemical reaction network including aerobic decomposition, sulfate reduction, iron reduction, and methanogenesis. Model outputs include simulated carbon stocks, carbon dioxide and methane fluxes, and porewater concentrations of key solutes related to sulfur, iron, and carbon cycling. The model simulations included a saline simulation (with tidal sulfate inputs), a fresh simulation (with low salinity and low sulfate inputs), and a saline simulation with lower vegetation productivity to represent the effect of salinity on vegetation. These simulations were conducted to demonstrate that a new model framework incorporating subsurface redox and biogeochemical interactions into a land surface model could reproduce measured surface greenhouse gas fluxes and biogeochemical dynamics in tidal marsh ecosystems, and to test whether including redox interactions in a land surface model would allow the model to resolve contrasts in biogeochemical cycling and greenhouse gas production between saline and freshwater wetlands.The data package includes gzipped tar archives (which can be expanded using standard tar and gzip utilities) of model outputs from three model configurations: saline subsurface and reduced vegetation productivity related to salinity; saline subsurface with vegetation productivity not reduced; and freshwater. Also included are code for the modified E3SM model, Alquimia interface, and PFLOTRAN reactive transport simulator in gzipped tar format; plain text parameter and configuration files; python code files for visualizing model output and defining model configurations; and model output, tide and salinity forcing, and configuration files in netCDF format. See the README.md file in the data package for a detailed description of all files contained in the package. All files are in netCDF (.nc), gzipped tar archive (.tar.gz or .tgz), or text (all other files).Updated: May 13, 2024. Model output, E3SM code, PFLOTRAN input files, and python codes for visualizing results were updated to reflect changes made for the manuscript revision. The updated archive reflects the code and model output from the final accepted manuscript. Changes included updated reaction parameters reflecting improved parameterization and additional comparisons with field measurements. E3SM code changes included better support for multiple grid cells and improved flow and transport parameterization.

54 ENVIRONMENTAL SCIENCES↗

Microwave radiometer measurement of tidally induced salinity changes off the Georgia coast

A quasi-synoptic survey of tidally induced salinity changes off the Georgia coast was performed by using a L band microwave radiomater onboard a NASA aircraft. Salinity maps were obtained for ebb and flood conditions in order to define the salinity distributions near rivers and sounds and major changes that occur from ebb flow to flood flow. The Savannah River plume dominated the salinity regime and extended out from the Savannah River mouth about 12 km during ebb tidal conditions. The plume merged into a band of low salinity water extending along the Georgia-South Carolina coast which was produced by the many river sources of freshwater entering the coastal waters. The changes in salinity observed offshore of the river plume area were consistent with estimates of the changes that would occur over a typical tidal excursion perpendicular to the observed gradient.

Kendall, B. M.↗

Levoglucosan data from five coastal streams impacted by the 2020 CZU Lightning Complex Fires, California, United States

This dataset includes levoglucosan data for five coastal California (United States) streams impacted by the 2020 CZU Lightning Complex Fires which burned from August 16th through September 22nd. Levoglucosan is a highly soluble and biolabile fraction of pyrogenic carbon. The five watersheds (San Lorenzo River, Pescadero Creek, Majors Creek, Laguna Creek, and Scott Creek) were impacted by the fires with watersheds experiencing a range of burn severity and extents. Grab samples were collected from each stream between October 2020 and May 2021, targeting both baseflow and event flow hydrologic conditions. Additional biogeochemistry data (i.e., organic and black carbon concentrations) can be found in a separate data package (https://doi.org/10.4211/hs.421c0226bb38460c8393d67fe0c4f802). This data package consists of one main data folder that contains (1) readme; (2) file-level metadata; (3) data dictionary; (4) field metadata with international generic sample numbers (IGSN); (5) methods codes; and (6) levoglucosan data. All files are .csv or .pdf.

2020 CZU Lightning Complex Fires↗

The dispersal of the Amazon's water

New information obtained with NASA's Coastal Zone Color Scanner and with drifting buoys reveals that the discharge of the Amazon is carried offshore around a retroflection of the North Brazil Current and into the North Equatorial Countercurrent towards Africa between June and January each year. From about February to May, the countercurrent and the retroflection weaken or vanish, and Amazon water flows northwestward toward the Caribbean Sea.

Muller-Karger, Frank E.↗

Remote identification of a gravel laden Pleistocene river bed

The abundance of gravel deposits is well known in certain areas across the Gulf of Mexico coastal plain, including lands within several National Forests. These Pleistocene gravels were deposited following periods of glacial buildup when ocean levels were down and the main river channels had cut deep gorges, leaving the subsidiary streams with increased gradients to reach the main channels. During the warm interglacial periods that followed each glaciation, melting ice brought heavy rainfall and torrents of runoff carrying huge sediment loads that separated into gravel banks below these steeper reaches where abraiding streams, developed. As the oceans rose again, filling in the main channels, these abraiding areas were gradually flattened and covered over by progressively finer material. Older terraces were uplifted by tectonic movements associated with the Gulf Coastal Plain, and the subsequent erosional processes gradually brought the gravels closer to the surface. The study area is located on the Kisatchie National Forest, in central Louisiana, near Alexandria. Details of the full study have been discussed elsewhere. The nearest source of chert is in the Ouachita Mountains located to the northeast. The Ouachita River flows south, out of these mountains, and in Pleistocene times probably carried these chert gravels into the vicinity of the present day Little River Basin which lies along the eastern boundary of the National Forest. Current day drainages cross the National Forest from west to east, emptying into the Little River on the east side. However, a north-south oriented ridge of hills along the west side of the Forest appears to be a recent uplift associated with the hinge line of the Mississippi River depositional basin further to the east, and 800,000 years ago, when these gravels were first deposited during the Williana interglacial period, the streams probably flowed east to west, from the Little River basin to the Red River basin on the west side of the Forest. Within the National Forest and north of Alexandria, along Fish Creek, and east and west of an area known as Breezy Hill, exist several small, worked out gravel pits on privately owned blocks of land, formerly used by the state and county road departments. The pattern presented by these pits gives the impression of a series of north-south drainages lacing through the Forest, probable tributaries to Fish Creek which flows south of east from the west side of the Forest to empty into the Little River. Because of this predominant north-south pattern, no consideration was given to areas between these drainages during early gravel exploration efforts.

Scholen, Douglas E.↗

A hybrid CNN-LSTM surrogate model for hyper-resolution spatiotemporal flood forecasting in Norfolk, Virginia

Study region: Norfolk, Virginia, United States Study focus: Accurate and timely flood forecasting is essential for enhancing resilience in coastal urban areas in the context of increasing frequency and intensity of rainfall, sea level rise and urbanization. This study presents a hybrid deep learning-based surrogate model that integrates Convolutional Neural Networks (CNN) and Long Short-Term Memory (LSTM) networks to enable real-time spatiotemporal flood forecasting. The model leverages CNN to capture spatial features from inputs such as elevation and Topographic Wetness Index (TWI), while LSTM processes time-series inputs of rainfall and tide data to capture temporal features. New hydrologic insights for the region: The hybrid CNN-LSTM model was trained using the physics-based hydrodynamic model simulations obtained from the Two-dimensional Unsteady FLOW (TUFLOW) model for Norfolk, Virginia, and achieved high predictive accuracy across diverse flood-prone areas. The reduced computational time from four to six hours using TUFLOW to 3.2 min per event using CNN-LSTM enables rapid flood inundation mapping and early warning applications. The model effectively captured both spatial flood extents and their temporal evolution across different flooding scenarios, providing forecasts at a 2.5-m spatial resolution and 15-min temporal resolution and a one-hour-ahead prediction horizon. While challenges remain in terms of transferability to new regions and real-time data assimilation, this approach demonstrates strong potential for supporting operational flood risk management in coastal urban environments.

Coastal urban flooding↗

Data, figures, animations, and scripts associated with the manuscript "Integrated Effects of Site Hydrology and Vegetation on Exchange Fluxes and Carbon Cycling at the Coastal Terrestrial Aquatic Interface"

This package contains the data, figures, animations, and scripts used in "Integrated Effects of Site Hydrology and Vegetation on Exchange Fluxes and Carbon Cycling at the Coastal Terrestrial Aquatic Interface" (Li et al., 2023). This study examines the interactions between soil, vegetation and hydrologic conditions in coastal areas, with a focus on the Chesapeake Bay region. The researchers used a mechanistic model called ATS-PFLOTRAN to explore how these interactions affect exchange process in different regions and the carbon/nitrogen cycle across the terrestrial-aquatic interface (TAI). Simulation scenarios isolate the effects of control factors and reaction constants derived from laboratory experiments. The results show a carbon cycle "hot zone" in coastal wetlands and in the transition zone between wetlands and uplands. Transpiration enhances fluxes between the surface and subsurface domains and increases dissolved oxygen in TAI. The decomposition of leaf-derived organic carbon provides an additional source of carbon for aerobic respiration and denitrification in the TAI. Microbial activity plays a key role in controlling redox conditions and their variability. This modeling study improves the understanding of complex TAI interactions and facilitates the representation of coastal ecosystems in larger-scale Earth system models.Several files can be found from this data package.1. Readme,md: This file describe the Title, Target Journal, Target submission date, Co-author, Science Questions, Hypotheses, Key words, Key message, Model and Data, Repo Structure. The user can read this file first and then go to details.2. mesh.zip: This file contains the mesh file for simulation cases. 3. Figure.zip: This file contains figures used in the manuscript . 4. animation.zip: This file contains animations used in the manuscript . 5. Data.zip: This file contains all required input data, such as concentration and flow boundaries. Also, it contains the DEM and processes results on area fraction. 6. Simulation_setup_and_results.zip: This file contains setup of cases used in the manuscript . The result files are too large, if you need that data, please contact to the Author. 7. notebooks.zip: This file contains the Jupyter notebooks for performing sensitivity analysis and other pre-process and post-process analyses.

54 ENVIRONMENTAL SCIENCES↗

Effects of different vegetation drag parameterizations on the tidal propagation in coastal marshlands

Vegetation drag is a fundamental quantity directly affecting results for both long- and short-term coastal marsh and geomorphological studies. The vegetation drag in coastal marshland has been modeled by various two-dimensional (2D) and threedimensional (3D) numerical parameterizations. 2D parameterizations treat coastal marshes as bottom roughness elements, while 3D parameterizations resolve the vertically-variable vegetation drag through the water column. However, differences in tidal propagation arising from different drag parameterizations within a single model are largely unknown, and clear guidance on parameterization selection is still missing. In this study, we implemented four vegetation drag parameterizations into the Model for Prediction Across Scales-Ocean (MPAS-O), which include 1) a 2D parameterization using land-cover type-determined Manning’s n (2DLM); 2) a 2D parameterization using vegetation-determined Manning’s n (2DVM); 3) a 3D parameterization for stiff vegetation (3DSV); and 4) a 3D parameterization for flexible vegetation (3DFV). Estimates of the flow resistance effects from these parameterizations were compared using a series of idealized tidal propagation simulations. Given the same tidal condition, flooding depth and flooding distance are the largest in the 2DLM simulations and the smallest in the 3DSV simulations. 2DVM results are the closest to the 2DLM results. 3DFV results are the closest to the average of 2DVM, 3DSV, and 3DFV results. 2DVM and 3DSV results are the least and most sensitive to the vegetation aboveground biomass, respectively. Based on the input data requirement and computational efficiency of each parameterization, a comparison summary is provided to help inform parameterization selection for specific applications. Here, the effects of these parameterizations on coastal geomorphology are further discussed, and the results demonstrate that estimates of the long-term evolution of coastal marshes and coastal morphology depend upon the selection of the vegetation drag parameterization

54 ENVIRONMENTAL SCIENCES↗

Sea-level rise and arsenic-rich soils: A toxic relationship

In the United States, dangerously high arsenic (As) levels have been found in drinking water wells in more than 25 states, potentially exposing 2.1 million people to drinking water high in As; a known carcinogen. The anticipated sea-level rise (SLR) is expected to alter soil biogeochemical and hydrological conditions, potentially impacting their ability to sequester As. In our study of coastal Wilmington, DE, an area projected to experience a 1-meter SLR by 2100, we examined the spatial distribution, speciation, and release possibilities of As due to SLR. To understand the complex dynamics at play, we employed a comprehensive approach, including bulk and micro X-ray absorption spectroscopy measurements, hydrological pattern evaluation, and macroscopic stirred-flow experiments. Further, our results suggest that introducing reducing and saline conditions can increase As release in both river water and seawater inundation scenarios, most likely due to ionic competition and the dissolution of As-bearing Fe/Mn oxides. Regardless of the salinity source, the released As concentrations consistently exceeded the EPA threshold for drinking water. Our results provide valuable insights for developing appropriate remedial and management strategies for this site and numerous others facing similar environmental challenges.

36 MATERIALS SCIENCE↗

Magnetotelluric Investigations of the Kilauea Volcano, Hawaii

In 2002 and 2003 a collaborative effort was undertaken between Lawrence Berkeley National Laboratory, Sandia National Laboratories, the U.S. Geological Survey (USGS) Menlo Park, the USGS Hawaiian Volcano Observatory, and Electromagnetic Instruments Inc. to study the Kilauea volcano in Hawaii using the magnetotelluric (MT) technique. The work was motivated by a desire to improve understanding of the magma reservoirs and conduits within Kilauea and the East and Southwest Rift zones, which has implications for understanding Kilauea's plumbing system. An improved understanding of the rift zones has implications in understanding large-scale landslides that are generated in the Hilina Slump, which produce significant impacts on coastal communities. Up to eight stations operated simultaneously, with multiple remote reference sites, and data were processed using multi-station robust processing techniques. Data was acquired at 70 sites over the Southwest and East rift zones. Good to excellent quality data were obtained even in the harshest conditions, such as those encountered on the fresh lava flows of the East Rift Zone, where electrical contact resistances are on the order of 100 kΩ. A three-dimensional (3D) MT model study was done to guide interpretation of the observed MT measurements. Synthetic modeling demonstrates that conductive bodies in the upper 3 km can be spatially resolved where MT station sampling is good. Resistivity anomalies in the 3D inversions have a high degree of spatial correlation with previously published seismic velocity anomalies beneath Kilauea. Melt fractions between 0.096 and 0.117 are calculated for the Kilauea and Pu'u'ō'ō low resistivity anomalies, respectively.

58 GEOSCIENCES↗

Effects of small marine energy deployments on oceanographic systems

The placement and operation of marine energy deployments in the ocean have the potential to change flow patterns, decrease wave heights, and/or remove energy from the oceanographic system. Changes in oceanographic systems resulting from harvesting marine energy, particularly tidal and wave energy, may be of concern. These changes include alterations in nearfield and farfield physical processes, as well as potential secondary environmental effects such as changes in sediment transport patterns, biological processes, or coastal erosion. Knowledge of changes in oceanographic systems associated with marine energy is primarily available from numerical modeling studies, informed by some laboratory tests and very few field measurements. A literature review was conducted using the Tethys knowledge base and other online sources, building on conclusions from the Ocean Energy Systems-Environmental State of the Science report. Potential changes in oceanographic systems that may be caused by marine energy differ between tidal and wave devices because of different extraction mechanisms and siting locations. Numerical models show that tidal extraction on the order of hundreds of megawatts or with significant channel blockage is required to create changes in oceanographic processes that exceed natural variability. Effects from wave energy extraction in arrays are localized and dependent on array spacing and proximity to the shore. Here the available evidence supports the conclusion that the risk of significant environmental effects from such changes could be retired (i.e., less investigation required for every project) for small deployments—those representative of the state of the industry in 2021. Determining changes in oceanographic systems to be low risk for small deployments can thereby streamline environmental consenting by reducing monitoring needs at this early stage in the industry.

54 ENVIRONMENTAL SCIENCES↗

Unifying Advective and Diffusive Descriptions of Bedform Pumping in the Benthic Biolayer of Streams

Abstract Many water quality and ecosystem functions performed by streams occur in the benthic biolayer, the biologically active upper (~5 cm) layer of the streambed. Solute transport through the benthic biolayer is facilitated by bedform pumping, a physical process in which dynamic and static pressure variations over the surface of stationary bedforms (e.g., ripples and dunes) drive flow across the sediment‐water interface. In this paper we derive two predictive modeling frameworks, one advective and the other diffusive, for solute transport through the benthic biolayer by bedform pumping. Both frameworks closely reproduce patterns and rates of bedform pumping previously measured in the laboratory, provided that the diffusion model's dispersion coefficient declines exponentially with depth. They are also functionally equivalent, such that parameter sets inferred from the 2D advective model can be applied to the 1D diffusive model, and vice versa. The functional equivalence and complementary strengths of these two models expand the range of questions that can be answered, for example, by adopting the 2D advective model to study the effects of geomorphic processes (such as bedform adjustments to land use change) on flow‐dependent processes and the 1D diffusive model to study problems where multiple transport mechanisms combine (such as bedform pumping and turbulent diffusion). By unifying 2D advective and 1D diffusive descriptions of bedform pumping, our analytical results provide a straightforward and computationally efficient approach for predicting, and better understanding, solute transport in the benthic biolayer of streams and coastal sediments.

Grant, Stanley B.↗

Kilauea Magnetotelluric Dataset

In 2002 and 2003 a collaborative effort was undertaken between Lawrence Berkeley National Laboratory, Sandia National Laboratories, the USGS Menlo Park, the USGS Hawaiian Volcano Observatory, and Electromagnetic Instruments Inc. to study the Kilauea volcano in Hawaii using the magnetotelluric (MT) technique. The work was motivated by a desire to improve understanding of the magma reservoirs and conduits within Kilauea and the East and Southwest Rift zones, which has implications for understanding Kilaueas plumbing system. An improved understanding of the rift zones has implications in understanding large-scale landslides that are generated in the Hilina Slump, which produce significant impacts on coastal communities. Up to eight stations operated simultaneously, with multiple remote reference sites, and data were processed using multi-station robust processing techniques. In total, data were acquired at 70 sites over the Southwest and East rift zones. Good to excellent quality data were obtained even in the harshest conditions, such as those encountered on the fresh lava flows of the East Rift Zone (ERZ), where electrical contact resistances are on the order of 100 kOhm. This data supports the continuing efforts to increase geothermal power on the island of Hawaii. Each of the 70 EDI files are the MT impedance tensors for 1 site. There is also a description of the processing of the data and a site map showing the locations of each site.

15 GEOTHERMAL ENERGY↗