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At least 181 records · Page 10

Computer systems and methods for the query and visualization multidimensional databases

A method of generating a data visualization is performed at a computer having a display, one or more processors, and memory. The memory stores one or more programs for execution by the one or more processors. The process receives user specification of a plurality of characteristics of a data visualization. The data visualization is based on data from a multidimensional database. The characteristics specify at least x-position and y-position of data marks corresponding to tuples of data retrieved from the database. The process generates a data visualization according to the specified plurality of characteristics. The data visualization has an x-axis defined based on data for one or more first fields from the database that specify x-position of the data marks and the data visualization has a y-axis defined based on data for one or more second fields from the database that specify y-position of the data marks.

97 MATHEMATICS AND COMPUTING↗

Alignment and position visualization methods for the biomedical imaging and therapy (BMIT) MRT lift

The Microbeam Radiation Therapy (MRT) Lift is an eight stage positioning and scanning system at the Canadian Light Source’s BMIT Facility. Alignment of the sample with the beam using the MRT Lift is a time consuming and challenging task. The BMIT Group has developed a Python-based MRT Lift positioning and control program that uses a combination of computational and iterative methods to independently adjust the sample’s X, Y, Z, pitch and roll positions. The program offers “1-Click” alignment of the sample to the beam. Use of a wireframe visualization technique enables even minute movements to be illustrated. Proposed movements and the resulting MRT Lift position can be manually verified before being applied. Optional integration with the SolidWorks modelling platform allows high quality renderings of the MRT Lift in its current or proposed position to be displayed in real time. Human factors principles are incorporated into the program with the objective of delivering easy to use controls for this complex device.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

An EvoDevo Study of Salmonid Visual Opsin Dynamics and Photopigment Spectral Sensitivity

Salmonids are ideal models as many species follow a distinct developmental program from demersal eggs and a large yolk sac to hatching at an advanced developmental stage. Further, these economically important teleosts inhabit both marine- and freshwaters and experience diverse light environments during their life histories. At a genome level, salmonids have undergone a salmonid-specific fourth whole genome duplication event (Ss4R) compared to other teleosts that are already more genetically diverse compared to many non-teleost vertebrates. Thus, salmonids display phenotypically plastic visual systems that appear to be closely related to their anadromous migration patterns. This is most likely due to a complex interplay between their larger, more gene-rich genomes and broad spectrally enriched habitats; however, the molecular basis and functional consequences for such diversity is not fully understood. This study used advances in genome sequencing to identify the repertoire and genome organization of visual opsin genes (those primarily expressed in retinal photoreceptors) from six different salmonids [Atlantic salmon ( Salmo salar ), brown trout ( Salmo trutta ), Chinook salmon ( Oncorhynchus tshawytcha ), coho salmon ( Oncorhynchus kisutch ), rainbow trout ( Oncorhynchus mykiss ), and sockeye salmon ( Oncorhynchus nerka )] compared to the northern pike ( Esox lucius ), a closely related non-salmonid species. Results identified multiple orthologues for all five visual opsin classes, except for presence of a single short-wavelength-sensitive-2 opsin gene. Several visual opsin genes were not retained after the Ss4R duplication event, which is consistent with the concept of salmonid rediploidization. Developmentally, transcriptomic analyzes of Atlantic salmon revealed differential expression within each opsin class, with two of the long-wavelength-sensitive opsins not being expressed before first feeding. Also, early opsin expression in the retina was located centrally, expanding dorsally and ventrally as eye development progressed, with rod opsin being the dominant visual opsin post-hatching. Modeling by spectral tuning analysis and atomistic molecular simulation, predicted the greatest variation in the spectral peak of absorbance to be within the Rh2 class, with a ∼40 nm difference in λ max values between the four medium-wavelength-sensitive photopigments. Overall, it appears that opsin duplication and expression, and their respective spectral tuning profiles, evolved to maximize specialist color vision throughout an anadromous lifecycle, with some visual opsin genes being lost to tailor marine-based vision.

59 BASIC BIOLOGICAL SCIENCES↗

File format for normalizing radiological concentration exposure rate and dose rate data for the effects of radioactive decay and weathering processes

This report specifies the electronic file format that was agreed upon to be used as the file format for normalized radiological data produced by the software tool developed under this TI project. The NA-84 Technology Integration (TI) Program project (SNL17-CM-635, Normalizing Radiological Data for Analysis and Integration into Models) investigators held a teleconference on December 7, 2017 to discuss the tasks to be completed under the TI program project. During this teleconference, the TI project investigators determined that the comma-separated values (CSV) file format is the most suitable file format for the normalized radiological data that will be outputted from the normalizing tool developed under this TI project. The CSV file format was selected because it provides the requisite flexibility to manage different types of radiological data (i.e., activity concentration, exposure rate, dose rate) from other sources [e.g., Radiological Assessment and Monitoring System (RAMS), Aerial Measuring System (AMS), Monitoring and Sampling). The CSV file format also is suitable for the file format of the normalized radiological data because this normalized data can then be ingested by other software [e.g., RAMS, Visual Sampling Plan (VSP)] used by the NA-84’s Consequence Management Program.

97 MATHEMATICS AND COMPUTING↗

A Visual Comparison of Silent Error Propagation

High-performance computing (HPC) systems play a critical role in facilitating scientific discoveries. Their scale and complexity (e.g., the number of computational units and software stack) continue to grow as new systems are expected to process increasingly more data and reduce computing time. However, with more processing elements, the probability that these systems will experience a random bit-flip error that corrupts a program's output also increases, which is often recognized as silent data corruption. Analyzing the resiliency of HPC applications in extreme-scale computing to silent data corruption is crucial but difficult. An HPC application often contains a large number of computation units that need to be tested, and error propagation caused by error corruption is complex and difficult to interpret. Here, to accommodate this challenge, we propose an interactive visualization system that helps HPC researchers understand the resiliency of HPC applications and compare their error propagation. Our system models an application's error propagation to study a program's resiliency by constructing and visualizing its fault tolerance boundary. Coordinating with multiple interactive designs, our system enables domain experts to efficiently explore the complicated spatial and temporal correlation between error propagations. At the end, the system integrated a nonmonotonic error propagation analysis with an adjustable graph propagation visualization to help domain experts examine the details of error propagation and answer such questions as why an error is mitigated or amplified by program execution.

97 MATHEMATICS AND COMPUTING↗

Robotic Non-destructive Test of Concrete Structures with GPR, Impact Echo and 3D Vision - 19540

Structural members come across with various internal defects that cannot be evaluated visually. Instead, hand-held nondestructive sensors are used to detect such defects. In many situations, the hand-held NDT is not possible in high-risk structures because of limited access or safety issues. Therefore, Robotic NDT plays major role in assessing such structures. Robot Operating Systems (ROS) is a powerful open source tool, which is used to program and control robots and other devices enabling one to use sensors, devices and new functionalities such as autonomous navigation, visual perception. For the research presented, ROS is used to program the Sawyer robot arm manufactured by Rethink Robotics. The control system for the robot ensures the ability to adapt to different weights of integrated measuring devices and measured force applied against the wall with a wheeled measuring device while making a remote sweep. Twelve reinforced concrete (RC) beams built with characterized defects are evaluated with the robotic arm integrated with the measuring devices. The RC beams are characterized by voids, corrosion and debonding problems of rebars. The Impact Echo and Ground Penetrating Radar (GPR) devices attached to the robot arm are used to measure the material properties of the concrete beams. The robot arm ensures consistency and uniformity of measurement even in obscure locations. Infrared cameras are used to obtain 3D images of the surfaces of the concrete structures. Roughness is analyzed using computer vision techniques prior to the use of other sensors that are in touch with the surfaces. The computer vision is also used to handle the images collected from GPR sensor. Hand-held NDE is also performed to verify the results obtained by robotic examination. (authors)

42 ENGINEERING↗

Combining Agent Based Modeling and System Dynamics to Investigate the Circularity of Plastics

The United States currently produces about 1 million metric ton of ocean plastic pollution annually. One proposed solution to combat plastic waste is a circular economy (CE), which aims to transition from today's take-make-waste linear pattern of production and consumption to a system where the value of resources is maximized over time. Two key methods in industrial ecology are useful in assessing the viability of CE: (1) System Dynamics (SD) and (2) Agent Based Modeling (ABM). In prior work, the plastic life cycle was modeled with SD and ABM. The two models calculate recycling rates and costs in different ways, making it difficult to pinpoint necessary next steps. We integrate the ABM and SD models - linking the emergent patterns from micro-level human decisions to system level processes - which allows a more comprehensive understanding of feedbacks, costs, and environmental impacts. The integrated model is more accurate, and can be used to visualize recycling rates and human health and environmental impacts over time. The difference between the integrated and original SD model prompts a Sobol sensitivity analysis, which is used to understand which behavioral factors most affect plastic recycling patterns. We find that the habitual component is typically the most influential in promoting positive recycling behavior. Additionally, we utilize the combined model to understand and visualize how various behavioral intervention scenarios, like improved access to recycling programs and cart tagging, influence recycling patterns; these results can guide future policy-making.

agent-based modeling↗

Ravel

Ravel is a tool for analyzing and visualizing parallel execution traces. It deduces a logical structure of parallel program events from the trace records and calculates comparative metrics. It displays the results of this analysis using multiple views at varying levels of detail to allow interactive exploration of the trace.

Source record↗

Contributions To Studies of Cp Violation and Hadronic Physics with the Babar Collaboration (Final Report)

The University of Louisville High Energy Physics group has undertaken a long-term effort in understanding baryon production in elementary particle processes in the 10 GeV energy region. We have contributed significantly to the broad program of the BaBar Collaboration, particularly in support of computing, data visualization, and simulation. We report here on progress in the areas of service to the Collaboration and understanding of baryon production via measurement of inclusive hadronic particle spectra.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Laser Transport System Vacuum Simulations and LED Atom Tracker

MAGIS-100 is an experiment using atom interferometry on strontium atoms in a 100m vacuum chamber. The laser travels through a laser transport system (LTS) before going down the chamber. Two projects were completed over the course of the internship. One project was conducting vacuum simulations on the LTS to ensure it meets the experimental pressure requirement of 10-11 torr. This was done by characterizing the pressure profile with variations in pump size, pump spacing, and orifice size. The initial design of the LTS included one 30 L/s ion pump in the high vacuum (HV) region, a lens mount with holes of diameter 0.788”, and three 150 L/s ion pumps in the ultra-high vacuum (UHV) region. After adjusting these variables, it was concluded that the lens mount holes could be reduced to 0.200” in diameter and one 150 L/s ion pump in the UHV could be removed and still meet the experimental requirements. The other project was to design an LED atom tracker that shows the position of the strontium atoms in the 100m shaft. This will help with public outreach by allowing visitors to have a visual of the experiment. An Arduino Uno and Arduino Due were programmed using classical physics formulas to direct the RGB LED strips to flash in sync with the falling atoms. The requirements for powering and connecting the hardware were calculated and recommendations for scaling the system to 100m were made.

43 PARTICLE ACCELERATORS↗

UCB-GLOBES: An open-access mass spectral database of identified and unidentified atmospheric organic compounds

Chemical characterization of atmospheric organic aerosols using gas chromatography with 70 eV electron ionization mass spectrometry (GC/EI-MS) has been used for decades in advancing molecular marker detection and identification, though primarily through suspect screening and/or targeted analyses. To advance non-targeted analyses of environmental samples, we have catalogued approximately 27 000 mass spectra (MS) of the trimethylsilyl derivatives of semi-volatile organic aerosol (OA) analytes in the open-access University of California Berkeley Goldstein Library of Organic Biogenic Environmental Spectra (UCB-GLOBES). Analytes were observed in ambient samples from the U.S. and the Central Amazon and/or laboratory simulations of secondary OA (SOA) formation. These samples are representative of OA under urban and biomass burning influences as well as SOA derived from biogenic precursors (e.g., isoprene, monoterpenes, sesquiterpenes) and biomass burning intermediates. MS are documented in UCB-GLOBES without regard to known chemical identity, annotated with extensive metadata such as sample source/experimental conditions, any structural information gained from MS analyses, and predicted chemical properties such as average carbon oxidation state and carbon number. UCB-GLOBES MS are compatible for importing into the NIST MS Search program, and we have also provided a Jupyter Notebook for MS visualization and comparisons. We demonstrate the utility of UCB-GLOBES through MS reanalyses of prior analytes observed in ambient data, finding a 20 % reduction in the number of analytes assigned to OA source categories reliant solely on time series correlation and an overall 11 % increase in new MS-based OA source categorization for the Southeast U.S. For 1513 analytes observed previously in the Central Amazon, we found 375 MS matches using UCB-GLOBES vs. 136 MS matches during prior analyses, representing a 14 % gain in newly confirmed or newly categorized OA species. While OA from laboratory oxidation experiments in UCB-GLOBES are highly diverse chemically, on average only 29 % of UCB-GLOBES MS have a mass spectral match to another MS entry in UCB-GLOBES and/or in databases of known compounds (i.e. NIST MS Database, Adams Essential Oil, MANE Flavor and Fragrance Company). This indicates that roughly 70 % of UCB-GLOBES MS are unique thus far, not observed more than once among the laboratory oxidation samples and ambient data in UCB-GLOBES MS. Further, only 18 % can be positively identified using these databases or known authentic standards. This points to a large gap between these laboratory simulations and ambient OA. Overall, the UCB-GLOBES database can be utilized for improving confidence in OA source categorization and/or identification, novel chemical marker discovery, tracking chemical diversity, de novo structure and properties prediction, and improving MS search and matching algorithms. This can ultimately inform future research priorities for the chemical characterization of atmospheric organic samples.

Mass spectrometry↗

Ravel

Ravel is a tool for analyzing and visualizing parallel execution traces. It deduces a logical structure of parallel program events from the trace records and calculates comparative metrics. It displays the results of this analysis using multiple views at varying levels of detail to allow interactive exploration of the trace.

Source record↗

Enhanced Visualization Capabilities in OpenMC: Report of Activities under a DOE GAIN Voucher

This work was performed under a Cooperative Research and Development Agreement (CRADA) through the U.S. Department of Energy’s Gateway for Accelerated Innovations in Nuclear (GAIN) program in partnership with Oklo Inc., the industry participant. The broad goal of this project was to improve the visualization capabilities of OpenMC related to model development and simulation results. OpenMC is a Monte Carlo particle transport code that is developed and maintained by a broad community of contributors, of which Argonne National Laboratory plays a leading role.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Double-Shell Tank Primary Bottom Inspection Development - 19067

Double-Shell Tank (DST) integrity at Hanford is maintained with a variety of activities such as ultrasonic and visual inspections, chemistry controls, corrosion monitoring and structural analyses methods [1]. A pressing need for the Double-Shell Tank Integrity Program is the ability to inspect the bottom of the tanks. Though the DSTs' annulus spaces (the space between the internal and external tank walls) have been inspected visually since 1992 and with Ultrasonic Testing (UT) since 1996, WRPS has been unable to conduct inspections of the tank bottoms due to limitations of available technology, omitting about 40 percent of the tank surface below the maximum fill level from routine inspection. Visual inspections of the tank annulus have been conducted up to five times in some DSTs and the annulus space for all of the DSTs has been inspected twice with UT. The annulus region includes the walls of the primary tank and secondary liner along with accessible portions of the secondary liner bottom. Due to the lack of under-tank inspection technology, degradation of the primary tank bottom in Tank AY-102 was undetected until the tank leaked into its annulus space, confirmed in 2012 [2]. Since that time, WRPS has been working with the nondestructive examination community and the Pacific Northwest National Laboratory to evaluate potential technologies to conduct these challenging remote inspections. Recent work has included the development, testing, and deployment of several remote visual inspection technologies to observe the condition of the primary tank bottom of the DSTs by leveraging air distribution slots in the refractory pad on which it rests. Robotic solutions to conduct this inspection were developed with a detailed understanding of the physical configuration and operational logistics. Understanding and subsequent communication of these details to vendors within the robotics and nondestructive examination community was a critical component to the successful production of these new tools. In total, two remote visual inspection tools were produced by two vendors. The first tool was designed to leverage existing ultrasonic testing magnetic wall crawler technology in use within the double-shell tank annuli at Hanford. This resulted in a cost savings, immediate familiarization with the equipment, and a more streamlined shop to field experience. The second tool was developed from the ground up, and represents a more tailored and purpose-built solution to the problem. While costlier and more complex, it is also more versatile and capable of future growth or adaptation. Initial design of both tools began in early FY17 with fabrication and testing completed in early FY18. The tools were designed to be deployed alongside existing inspection operations and expand coverage. Development of visual inspection tools to evaluate the primary tank bottom region of the double-shell tanks was planned as the first stage of inspection. Continued development of volumetric sensors and incorporation of these inspection tools into Hanford's ongoing Double-Shell Tank Integrity Program are the next steps, continuously seeking to expand understanding of asset integrity and remaining useful life. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

LANL Regular Employee Population and Demographics, FY15-21

This document summarizes an effort to compile and analyze the LANL regular employee population’s demographic attributes and trends between FY15-FY21 using MicroStrategy, a web-based data analytics and visualization tool. LANL’s HR Division collected and prepared data for the Weapons Program’s annual reporting activities for the 2017 through 2023 NNSA Stockpile Stewardship and Management Plan (SSMP). Los Alamos workforce data represent the fiscal year-end snapshot of the permanent employee population who are categorized by the Common Occupational Classification System (COCS). This work enables further analyses, including trends for all workforce attributes presented in the SSMPs as well as a definition of a crosswalk between COCS categorization and the internal laboratory job classification hierarchy. Data for other sites and the federal workforce, as shown in the SSMPs, are included and corresponding figures can be visualized within the MicroStrategy tool. A portable, Excel-based version of the tool was developed and shared with the multi-site workforce working group. This summary highlights selected aspects of the LANL regular workforce. The data analyses and visualizations communicate insights within three major themes regarding permanent LANL employees: 1) demographic transformation, 2) attrition, and 3) skills. Regarding demographic transformation, and consistent with the general trend across the enterprise, early career regular employees are the fastest growing group, with growth ranging between 12-34% year-to-year over the seven-year period analyzed. The data also reflect effects of internal and external factors on attrition; the large spike in separations in FY18 aligns with the contract transition from LANS to Triad and the dip in attrition between FY20-FY21 is likely a result of the global pandemic. The population of regular employees in general management, engineer, and operator COCS categories have the fastest growth rates amongst all the occupational categories. The MicroStrategy and Excel tools provide additional details and trends.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Ordering Traces Logically to Identify Lateness in Message Passing Programs

Event traces are valuable for understanding the behavior of parallel programs. However, automatically analyzing a large parallel trace is difficult, especially without a specific objective. We aid this endeavor by extracting a trace's logical structure, an ordering of trace events derived from happened-before relationships, while taking into account developer intent. Using this structure, we can calculate an operation's delay relative to its peers on other processes. The logical structure also serves as a platform for comparing and clustering processes as well as highlighting communication patterns in a trace visualization. We present an algorithm for determining this idealized logical structure from traces of message passing programs, and we develop metrics to quantify delays and differences among processes. We implement our techniques in Ravel, a parallel trace visualization tool that displays both logical and physical timelines. Rather than showing the duration of each operation, we display where delays begin and end, and how they propagate. As a result, we apply our approach to the traces of several message passing applications, demonstrating the accuracy of our extracted structure and its utility in analyzing these codes.

97 MATHEMATICS AND COMPUTING↗

Scalable Technologies Achieving Risk-Informed Condition-Based Predictive Maintenance Enhancing the Economic Performance of Operating Nuclear Power Plants

The primary objective of the research presented in this report is to develop scalable technologies that are deployable across plant assets and across the nuclear fleet to achieve risk-informed predictive maintenance (PdM) strategies at commercial nuclear power plants (NPPs). Over the years, the nuclear fleet has relied on labor-intensive and time-consuming preventive maintenance (PM) programs, driving up operation and maintenance (O&M) costs to achieve high capacity factors. A well-constructed risk-informed PdM approach for an identified plant asset has been developed in this research, taking advantage of advancements in data analytics, machine learning (ML), artificial intelligence (AI), physics-informed modeling, and visualization. These technologies would allow commercial NPPs to reliably transition from current labor-intensive PM programs to a technology driven PdM program, eliminating unnecessary O&M costs. The work presented in the report is being developed as part of a collaborative research effort between Idaho National Laboratory and Public Service Enterprise Group Nuclear, LLC. This report (1) reflects the results of work by LWRS Program researchers with PSEG, Nuclear LLC-owned Salem and Hope Creek Nuclear Power Plants; (2) presents utilization of circulating water system (CWS) heterogeneous data and fault modes from both the Salem and Hope Creek nuclear power plant sites to develop salient fault signatures associated with each fault mode; (3) describes the integration of component-level predictive models into a robust system-level model enabled by the federated-transfer learning; (4) describes the development of physics-informed model of circulating water pump and motor; (5) develops a scalable risk and economic model; and (6) outlines the development of a user-centric visualization application. The outcomes presented in this report lays the foundation and provides a much-needed technical basis to focus on explainability and trustworthiness of ML and AI-based technologies, as part of future research.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

National Wind Technology Center-Characterization of Atmospheric Conditions

Data provided by the instrumentation located at the National Wind Technology Center (NWTC) is compiled below for the purposes of characterizing the atmospheric operating conditions at the National Renewable Energy Laboratories (NREL) wind site. Conditions are presented conditioned on month of the year to show seasonal variation, and based on characteristic quantities seen in the atmospheric flow including, bulk wind speed, direction, and atmospheric stability. All data reported and analyzed in the following document were collected from instrumentation mounted on the 135 m-tall masts erected at the NWTC near Boulder, Colorado. Each of the two met-masts (named M4 and M5) were sited specifically to measure the inflow wind to several of the utility-scale turbines at the NWTC. The construction, operation, and maintenance of the masts has been supported since their commissioning in 2011 by the Department of Energy, Office of Energy Efficiency and Renewable Energy, Wind and Water Power Program. Data from the masts are publicly available for download or basic visualization, hosted on NREL's website (https://nwtc.nrel.gov/135mData). Data from the masts have been used in the past for a wide range of projects including wind turbine power performance measurements, high fidelity model development and validation, and atmospheric science research. An interactive visualization platform has been developed on NREL's Open Energy Information platform and can be used to reproduce many of the graphics included in the current work. This report describes in detail the atmospheric conditions recorded by M5, the inflow mast for the DOE-owned GE 1.5 MW wind turbine. The report focuses on data recorded from August 2012 to May 2018 and includes: an introduction to the wind climate at the NWTC; a physical description of the met masts; a review of installed instrumentation; and data collection, processing, and quality control methods. In addition to a concise description of the instrumentation from the met masts and the data channels they provide, this report characterizes the behavior of the atmospheric resource first in a cumulative sense, discussing mainly the distributions wind speeds, flow directions and thermodynamic properties at several heights along the towers. Periodicity in atmospheric conditions is then detailed through analysis of diurnal and annual cycles of the data streams. Periods of both low turbulence and extreme atmospheric events that are of interest in terms of wind turbine operation and wind energy research are detailed in the final chapter of this report. Low turbulence events are somewhat rare at the NWTC and are of interest from the perspective of validating the operation of new wind turbine and blade designs. Similarly, the NTWC is known for a relatively higher rate of occurrence of extreme weather events.

17 WIND ENERGY↗