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At least 181 records · Page 10

Scaling of Transition State Vibrational Frequencies and Application of d -Band Theory to the Brønsted–Evans–Polanyi Relationship on Surfaces

Semiempirical energy relations provide a means of estimating thermodynamic properties. Specifically, linear scaling relationships (LSRs) and Brønsted–Evans–Polanyi (BEP) relationships correlate adsorption energies between adsorbates across surfaces and reaction energies with activation barriers, respectively. Although vibrational scaling relations (VSRs) exist between adsorbates at identical sites, scaling between vibrational frequencies of adsorbed local minima and transition states is lacking. Here, we present density functional theory calculations for AH X (A = C, N, O) diffusions on transition metal surfaces and reveal linear scaling between frequencies of local minima and the transition state between those minima. Using d-band theory and linear muffin tin orbital theory (LMTO), we derive the slopes of these transition state vibrational scaling relations (TSVSRs) and, in so doing, provide a rigorous theory extending the original BEP relations developed for solution chemistry to surface chemistry. Furthermore, with a single reference DFT calculation, we predict the slopes and quantify uncertainty in the predictions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Soil Respiration Variability and Correlation Across a Wide Range of Temporal Scales

Abstract The high temporal variability of the soil‐to‐atmosphere CO 2 flux (soil respiration, R S ) has been studied at hourly to multiannual time scales but remains less well understood than R S spatial variability. How R S fluxes vary and are autocorrelated at various time lags has practical implications for sampling and more fundamentally for our understanding of its abiotic and biotic underlying mechanisms. We examined the variability, correlation, and sampling requirements of R S over a wide range of temporal scales in a temperate deciduous forest in eastern Maryland, USA, using both automated (temporally continuous, N = 30,036 over 10 months) and survey (spatially diverse, temporally sparse, N = 1,912 over 17 months) data. Data from a global R S database were also used to examine interannual variability in comparable forests. The coefficient of variability of successive measurements generally varied from the minute (median coefficient of variation 16%) to hourly and daily (11–12%) time scales. Successive R S values measured at a given collar exhibited a strong hour‐to‐hour correlation ( r = 0.931) and a moderate correlation at a 2‐hr lag (0.289); day‐to‐day (i.e., 24 hr lag) hourly observations were uncorrelated. Daily R S means were well correlated at a 1‐day lag ( r = 0.856) but not at any further time lag. In a linear mixed‐effects model predicting R S , soil temperature and moisture exerted consistently strong effects regardless of time scale, and model coefficient of variability was generally high (>80%). These results provide new opportunities to explore the drivers and variability of R S fluxes, quantify sampling requirements, and improve error propagation.

Bond‐Lamberty, Ben↗

Stabilization of electron-scale turbulence by electron density gradient in national spherical torus experiment

Theory and experiments have shown that electron temperature gradient (ETG) turbulence on the electron gyro-scale, k{sub ⊥}ρ{sub e} ≲ 1, can be responsible for anomalous electron thermal transport in NSTX. Electron scale (high-k) turbulence is diagnosed in NSTX with a high-k microwave scattering system [D. R. Smith et al., Rev. Sci. Instrum. 79, 123501 (2008)]. Here we report on stabilization effects of the electron density gradient on electron-scale density fluctuations in a set of neutral beam injection heated H-mode plasmas. We found that the absence of high-k density fluctuations from measurements is correlated with large equilibrium density gradient, which is shown to be consistent with linear stabilization of ETG modes due to the density gradient using the analytical ETG linear threshold in F. Jenko et al. [Phys. Plasmas 8, 4096 (2001)] and linear gyrokinetic simulations with GS2 [M. Kotschenreuther et al., Comput. Phys. Commun. 88, 128 (1995)]. We also found that the observed power of electron-scale turbulence (when it exists) is anti-correlated with the equilibrium density gradient, suggesting density gradient as a nonlinear stabilizing mechanism. Higher density gradients give rise to lower values of the plasma frame frequency, calculated based on the Doppler shift of the measured density fluctuations. Linear gyrokinetic simulations show that higher values of the electron density gradient reduce the value of the real frequency, in agreement with experimental observation. Nonlinear electron-scale gyrokinetic simulations show that high electron density gradient reduces electron heat flux and stiffness, and increases the ETG nonlinear threshold, consistent with experimental observations.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Sparse maps—A systematic infrastructure for reduced-scaling electronic structure methods. II. Linear scaling domain based pair natural orbital coupled cluster theory

Domain based local pair natural orbital coupled cluster theory with single-, double-, and perturbative triple excitations (DLPNO-CCSD(T)) is a highly efficient local correlation method. It is known to be accurate and robust and can be used in a black box fashion in order to obtain coupled cluster quality total energies for large molecules with several hundred atoms. While previous implementations showed near linear scaling up to a few hundred atoms, several nonlinear scaling steps limited the applicability of the method for very large systems. In this work, these limitations are overcome and a linear scaling DLPNO-CCSD(T) method for closed shell systems is reported. The new implementation is based on the concept of sparse maps that was introduced in Part I of this series [P. Pinski, C. Riplinger, E. F. Valeev, and F. Neese, J. Chem. Phys. 143, 034108 (2015)]. Using the sparse map infrastructure, all essential computational steps (integral transformation and storage, initial guess, pair natural orbital construction, amplitude iterations, triples correction) are achieved in a linear scaling fashion. In addition, a number of additional algorithmic improvements are reported that lead to significant speedups of the method. The new, linear-scaling DLPNO-CCSD(T) implementation typically is 7 times faster than the previous implementation and consumes 4 times less disk space for large three-dimensional systems. For linear systems, the performance gains and memory savings are substantially larger. Calculations with more than 20 000 basis functions and 1000 atoms are reported in this work. In all cases, the time required for the coupled cluster step is comparable to or lower than for the preceding Hartree-Fock calculation, even if this is carried out with the efficient resolution-of-the-identity and chain-of-spheres approximations. The new implementation even reduces the error in absolute correlation energies by about a factor of two, compared to the already accurate previous implementation.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Quantifying particle-scale 3D granular dynamics during rapid compaction from time-resolved in situ 2D x-ray images

Understanding the particle-scale dynamics of granular materials during rapid compaction and flow is of fundamental importance for manufacturing, planetary science, geology, and defense applications. Time-resolved 2D radiography and static 3D x-ray tomography are powerful in situ tools for studying particle-scale dynamics but provide detail only in 2D or with significant time-scale limitations, respectively. Here, we introduce a new method that uses 2D in situ x-ray imaging for determining time-resolved 3D particle-scale dynamics in rapidly compressed granular materials. The method employs initial particle packing structures obtained from x-ray tomography, a 2D x-ray image generation algorithm, and an optimization algorithm. We first describe and validate the method using finite element simulations. Furthermore, we then apply the technique to x-ray phase-contrast images obtained during rapid compaction of granular materials with varying particle morphology and sample thickness. The depth-resolved particle-scale dynamics reveal complex velocity and porosity fields evolving heterogeneously along and perpendicular to the compaction direction. We characterize these features, their fluctuations near the compaction front, and the compaction front thickness. Our technique can be applied to understanding granular dynamics during rapid compaction events, and rearrangements during slower, but non-quasi-static, flows.

36 MATERIALS SCIENCE↗

Exploring the parameter space of MagLIF implosions using similarity scaling. III. Rise-time scaling

Magnetized liner inertial fusion (MagLIF) is a z-pinch magneto-inertial-fusion concept studied at the Z Pulsed Power Facility of Sandia National Laboratories. Two important metrics characterizing current delivery to a z-pinch load are the peak current and the current-rise time, which is roughly the time interval to reach the peak current. It is known that, when driving a z-pinch load with a longer current-rise time, the performance of the z-pinch decreases. However, a theory to understand and quantify this effect is still lacking. Here, in this paper, we utilize a framework based on similarity scaling to analytically investigate the variations in the performance of MagLIF loads when varying the current-rise time, or equivalently, the implosion timescale. To maintain similarity between the implosions, we provide scaling prescriptions of experimental input parameters defining a MagLIF load and derive the expected scaling laws for stagnation conditions and for various performance metrics. We compare predictions of the theory to 2D numerical simulations using the radiation, magneto-hydrodynamic code hydra. For several metrics, we find acceptable agreement between the theory and simulations. Our results show that the voltage φload near the MagLIF load follows a weak scaling law φload ∝$t_{φ}^{-0.12}$ with respect to the characteristic timescale t φ of the voltage source, instead of the ideal φload ∝$t_{φ}^{-1}$ scaling. This occurs because the imploding height of the MagLIF load must increase to preserve end losses. As a consequence of the longer imploding liners, the required total laser preheat energy and delivered electric energy increase. Overall, this study helps understand the trade-offs of the MagLIF design space when considering future pulsed-power generators with shorter and longer current-rise times.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Does jackknife scale really matter for accurate large-scale structure covariances?

ABSTRACT The jackknife method gives an internal covariance estimate for large-scale structure surveys and allows model-independent errors on cosmological parameters. Using the SDSS-III BOSS CMASS sample, we study how the jackknife size and number of resamplings impact the precision of the covariance estimate on the correlation function multipoles and the error on the inferred baryon acoustic scale. We compare the measurement with the MultiDark Patchy mock galaxy catalogues, and we also validate it against a set of lognormal mocks with the same survey geometry. We build several jackknife configurations that vary in size and number of resamplings. We introduce the Hartlap factor in the covariance estimate that depends on the number of jackknife resamplings. We also find that it is useful to apply the tapering scheme to estimate the precision matrix from a limited number of resamplings. The results from CMASS and mock catalogues show that the error estimate of the baryon acoustic scale does not depend on the jackknife scale. For the shift parameter α, we find an average error of 1.6 per cent, 2.2 per cent and 1.2 per cent, respectively, from CMASS, Patchy, and lognormal jackknife covariances. Despite these uncertainties fluctuate significantly due to some structural limitations of the jackknife method, our α estimates are in reasonable agreement with published pre-reconstruction analyses. Jackknife methods will provide valuable and complementary covariance estimates for future large-scale structure surveys.

Favole, Ginevra (ORCID:000000028218563X)↗

Sunyaev-Zel'dovich Effect and X-ray Scaling Relations from Weak-Lensing Mass Calibration of 32 SPT Selected Galaxy Clusters

Uncertainty in mass-observable scaling relations is currently the limiting factor for galaxy-cluster-based cosmology. Weak gravitational lensing can provide direct mass calibration and reduce the mass uncertainty. We present new ground-based weak lensing observations of 19 South Pole Telescope (SPT) selected clusters at redshifts 0.29 <= z <= 0.61 and combine them with previously reported space-based observations of 13 galaxy clusters at redshifts 0.576 <= z <= 1.132 to constrain the cluster mass scaling relations with the Sunyaev-Zel'dovich effect (SZE), the cluster gas mass M-gas and Y-X, the product of M-gas and X-ray temperature. We extend a previously used framework for the analysis of scaling relations and cosmological constraints obtained from SPT-selected clusters to make use of weak lensing information. We introduce a new approach to estimate the effective average redshift distribution of background galaxies and quantify a number of systematic errors affecting the weak lensing modelling. These errors include a calibration of the bias incurred by fitting a Navarro-Frenk-White profile to the reduced shear using N-body simulations. We blind the analysis to avoid confirmation bias. We are able to limit the systematic uncertainties to 5.6% in cluster mass (68% confidence). Our constraints on the mass-X-ray observable scaling relation parameters are consistent with those obtained by earlier studies and our constraints for the mass-SZE scaling relation are consistent with the simulation-based prior used in the most recent SPT-SZ cosmology analysis. We can now replace the external mass calibration priors used in previous SPT-SZ cosmology studies with a direct, internal calibration obtained for the same clusters.

cosmology: observations↗

A Bloom Filter Based Scalable Data Integrity Check Tool for Large-Scale Dataset

Large scale HPC applications are becoming increasingly data intensive. At Oak Ridge Leadership Computing Facility (OLCF), we are observing the number of files curated under individual project are reaching as high as 200 millions and project data size is exceeding petabytes. These simulation datasets, once validated, often needs to be transferred to archival system for long term storage or shared with the rest of the research community. Ensuring the data integrity of the full dataset at this scale is paramount important but also a daunting task. This is especially true considering that most conventional tools are serial and file-based, unwieldy to use and/or can't scale to meet user's demand.To tackle this particular challenge, this paper presents the design, implementation and evaluation of a scalable parallel checksumming tool, fsum, which we developed at OLCF. It is built upon the principle of parallel tree walk and work-stealing pattern to maximize parallelism and is capable of generating a single, consistent signature for the entire dataset at extreme scale. We also applied a novel bloom-filter based technique in aggregating signatures to overcome the signature ordering requirement. Given the probabilistic nature of bloom filter, we provided a detailed error and trade-off analysis. Using multiple datasets from production environment, we demonstrated that our tool can efficiently handle both very large files as well as many small-file based datasets. Our preliminary test showed that on the same hardware, it outperforms conventional tool by as much as 4×. It also exhibited near-linear scaling properties when provisioned with more compute resources.

97 MATHEMATICS AND COMPUTING↗

Spatial scale drives patterns in soil bacterial diversity: Spatial scale drives soil diversity

Soil microbial communities are essential for ecosystem function, but linking community composition to biogeochemical processes is challenging because of high microbial diversity and large spatial variability of most soil characteristics. We investigated soil bacterial community structure in a switchgrass stand planted on soil with a history of grassland vegetation at high spatial resolution to determine whether biogeographic trends occurred at the centimeter scale. Moreover, we tested whether such heterogeneity, if present, influenced community structure within or among ecosystems. Pronounced heterogeneity was observed at centimeter scales, with abrupt changes in relative abundance of phyla from sample to sample. At the ecosystem scale (> 10 m), however, bacterial community composition and structure were subtly, but significantly, altered by fertilization, with higher alpha diversity in fertilized plots. Moreover, by comparing these data with data from 1772 soils from the Earth Microbiome Project, it was found that 20% diverse globally sourced soil samples, while grassland soils shared approximately 40% of their operational taxonomic units with the current study. By spanning several orders of magnitude, the analysis suggested that extreme patchiness characterized community structure at smaller scales but that coherent patterns emerged at larger length scales.

16S rRNA↗

Scaling Deep Learning on GPU and Knights Landing clusters

The speed of deep neural networks training has become a big bottleneck of deep learning research and development. For example, training GoogleNet by ImageNet dataset on one Nvidia K20 GPU needs 21 days. To speed up the training process, the current deep learning systems heavily rely on the hardware accelerators. However, these accelerators have limited on-chip memory compared with CPUs. To handle large datasets, they need to fetch data from either CPU memory or remote processors. We use both self-hosted Intel Knights Landing (KNL) clusters and multi-GPU clusters as our target platforms. From an algorithm aspect, current distributed machine learning systems are mainly designed for cloud systems. These methods are asynchronous because of the slow network and high fault-tolerance requirement on cloud systems. We focus on Elastic Averaging SGD (EASGD) to design algorithms for HPC clusters. Original EASGD used round-robin method for communication and updating. The communication is ordered by the machine rank ID, which is inefficient on HPC clusters. First, we redesign four efficient algorithms for HPC systems to improve EASGD's poor scaling on clusters. Async EASGD, Async MEASGD, and Hogwild EASGD are faster \textcolor{black}{than} their existing counterparts (Async SGD, Async MSGD, and Hogwild SGD, resp.) in all the comparisons. Finally, we design Sync EASGD, which ties for the best performance among all the methods while being deterministic. In addition to the algorithmic improvements, we use some system-algorithm codesign techniques to scale up the algorithms. By reducing the percentage of communication from 87% to 14%, our Sync EASGD achieves 5.3x speedup over original EASGD on the same platform. We get 91.5% weak scaling efficiency on 4253 KNL cores, which is higher than the state-of-the-art implementation.

60 APPLIED LIFE SCIENCES↗

Phoenix Dust Storm (PHX-DUST) Scale: A Cooperatively Developed Dust Storm Scale for Phoenix, Arizona

Using extensive localized meteorological and air quality data for central Arizona from 2010 to 2023, we create a postevent dust storm scale for use by the primary stakeholders in central Arizona for the Phoenix metropolitan area called the Phoenix Dust Storm (PHX-DUST) scale. To ensure usability across a wide spectrum of users, a core concept was to “keep it simple.” The PHX-DUST scale is based on (i) maximum dust concentration for particulate matter (PM10) across the network in micrograms per cubic meter which determines category, e.g., “category 5 (the highest observed category)” and category 4; (ii) the number of network monitors achieving dust concentrations above a threshold of 500 μg m−3 (categorized as “widespread” or “isolated,” as measures of spatial extent); (iii) a duration parameter (which determines “long duration” or “short duration”); and (iv) a measure of wind speed over the affected area (maximum wind gust recorded over the network, which may not be the maximum wind of the storm). Using this index for the 189 dust storms impacting the Phoenix metropolitan area for the period 2010–23, the most severe dust storm occurred on 5 July 2011 and is classified as a “Category 5, Widespread, Long-Duration High-Gust” event. This initial attempt at defining the PHX-DUST scale holds valuable applications for research, education, and applied analyses. It demonstrates that a consortium of interested groups can effectively work to create products benefiting the weather community and general public. Here, the PHX-DUST scale can also serve as a foundational framework for application in other regions where dust storms pose a threat to the well-being of populations, infrastructure, and ecosystems.

Atmosphere↗

Calibration of the Diffusivity Predictions of Centipede Using Approximate Bayesian Computation and Applications in Nyx (Engineering Scale) and Xolotl-MARMOT (Meso-Scale) Simulations

Fission gas evolution and release in UO 2 nuclear fuel are important fuel performance metrics and occur in several distinct stages: 1) nucleation, growth and resolution of intra-granular bubbles, 2) diffusion to grain boundaries and 3) nucleation and growth of bubbles at grain boundaries, which eventually form a connected network (percolation) enabling release of gas from grain boundaries through connections to triple junctions, grain edges or free surfaces. The NE-SciDAC project is developing several computational tools to model this problem, which are connected in a hierarchical multi-scale framework. The information transfer in the multi-scale framework is a critical step that, in addition to best-estimates, should include uncertainty quantification. Despite taking a first-principles multi-scale approach, there is a need to perform parameter calibration to ensure consistency with available experimental data. In the present study, uncertainty quantification (UQ) and parameter calibration is demonstrated for one of the lower length scale codes in the multi-scale framework (Centipede) and then the results, including instances of the propagated uncertainties, are used in other codes within the framework, specifically Nyx and Xolotl-MARMOT. We calibrated the model parameters in Centipede, a computer code used to predict diffusivities of uranium (U) and xenon (Xe) in the context of the simulation of fission gas in uranium oxide (UO 2 ) nuclear fuel. The Centipede code depends on 183 parameters, all of which are subject to uncertainty. The three data sets used in our calibration effort are taken from the literature. This data is available as a set of measurements, including measurement errors. Our goal is to calibrate a statistical model that predicts both the value of the measurement and the uncertainty associated with the measurement. We perform a Bayesian calibration of the model parameters using a dedicated approximate Bayesian computation (ABC) likelihood function. To avoid excessive computational costs, we replace the expensive Centipede simulation code by a higher-order surrogate model, constructed using only the 9 most important parameters. These important parameters are identified by a preliminary global sensitivity analysis (GSA) study. Among the important parameters are T0 (the temperature at which UO 2 is perfectly stoichiometric) and Hf_pO2 (the temperature dependence of the oxygen (O) partial pressure) that should be considered as operating conditions to be estimated along with the other parameters. We consider two different cases: one where we define one set of these operating conditions for all data sets, and one where we define distinct operating condition parameters for each data set. The Xe diffusivities predicted by the latter case show distinct features that could not be observed in the former. Next, we use the diffusivity predictions by Centipede as input to Nyx, a reduced order fuel performance code focused on gas behavior alone, in order to estimate quantities associated with inter-granular bubble formation at conditions specified by the experiments. Finally, the diffusivities obtained from the calibrated Centipede runs were used in coupled Xolotl-MARMOT simulations of intra- and inter-granular gas evolution. The results are compared to simulations using the baseline diffusivities from Turnbull et al.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Performance Comparison at Mach Numbers 1.8 and 2.0 of Full Scale and Quarter Scale Translating-Spike Inlets

The performance of a full-scale translating-spike inlet was obtained at Mach numbers of 1.8 and 2.0 and at angles of attach from 0 deg to 6 deg. Comparisons were made between the full-scale production inlet configuration and a geometrically similar quarter-scale model. The inlet pressure-recovery, cowl pressure-distribution, and compressor-face distortion characteristics of the full-scale inlet agreed fairly well with the quarter-scale results. In addition, the results indicated that bleeding around the periphery ahead of the compressor-face station improved pressure recovery and compressor-face distortion, especially at angle of attack.

Anderson, B. H.↗

Development of thermal stratification and destratification scaling concepts. Volume 1: Definition of thermal stratification scaling parameters and experimental investigations

The dimensionless parameters associated with the thermal stratification and pressure history of a heated container of liquid and its vapor were examined. The Modified Grashof number, the Fourier number, and an Interface number were parameterized using a single test liquid, Freon 113. Cylindrical test tanks with spherical dome end caps were built. Blanket heaters covered the tanks and thermocouples monitored the temperatures of the liquid, the ullage, the tank walls, and the foam insulation encapsulating the tank. A centrifuge was used for the 6 inch tank to preserve the same scaling parameter values between it and the larger tanks. Tests were conducted over a range of Gr* values and the degree of scaling was checked by comparing the dimensionless pressures and temperatures for each scaled pair of tests. Results indicate that the bulk liquid temperature, the surface temperature of the liquid, and the tank pressure can be scaled with the three dimensionless parameters. Some deviation was, however, found in the detailed temperature profiles between the scaled pairs of tests.

Lovrich, T. N.↗

Investigation of correlation between full-scale and fifth-scale wind tunnel tests of a Bell helicopter Textron Model 222

Reasons for lack of correlation between data from a fifth-scale wind tunnel test of the Bell Helicopter Textron Model 222 and a full-scale test of the model 222 prototype in the NASA Ames 40-by 80-foot tunnel were investigated. This investigation centered around a carefully designed fifth-scale wind tunnel test of an accurately contoured model of the Model 222 prototype mounted on a replica of the full-scale mounting system. The improvement in correlation for drag characteristics in pitch and yaw with the fifth-scale model mounted on the replica system is shown. Interference between the model and mounting system was identified as a significant effect and was concluded to be a primary cause of the lack of correlation in the earlier tests.

Squires, P. K.↗