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At least 181 records · Page 10

Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff

Teff (Eragrostis tef) is a cornerstone of food security in the Horn of Africa, where it is prized for stress resilience, grain nutrition, and market value. Here, we report a chromosome-scale assembly of allotetraploid teff (variety Dabbi) and patterns of subgenome dynamics. The teff genome contains two complete sets of homoeologous chromosomes, with most genes maintaining as syntenic gene pairs. TE analysis allows us to estimate that the teff polyploidy event occurred ~1.1 million years ago (mya) and that the two subgenomes diverged ~5.0 mya. Despite this divergence, we detect no large-scale structural rearrangements, homoeologous exchanges, or biased gene loss, in contrast to many other allopolyploids. The two teff subgenomes have partitioned their ancestral functions based on divergent expression across a diverse expression atlas. Together, these genomic resources will be useful for accelerating breeding of this underutilized grain crop and for fundamental insights into polyploid genome evolution.

54 ENVIRONMENTAL SCIENCES↗

PV-Finder: ML Based Algorithm for Primary Vertex Identification

he CMS detector at the High-Luminosity Large Hadron Collider (HL-LHC) will operate in challenging conditions with expected pile-up of up to 200 collisions per bunch crossing, necessitating the development of a more resilient primary vertex (PV) reconstruction method to ensure the integrity of data analysis and the efficiency of the CMS triggering system. This contribution describes preliminary studies on a new ML based PV-Finder method for PV identification. The method is based on a model trained using Kernel Density Estimations (KDEs) derived from the positions of reconstructed tracks at the beamline, incorporating uncertainties from track parameters. It also utilizes target histograms, modeled as Gaussian distributions centered on the actual ground truth values of specific primary vertices.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Reduced ecosystem resilience quantifies fine-scale heterogeneity in tropical forest mortality responses to drought

Sensitivity of forest mortality to drought in carbon-dense tropical forests remains fraught with uncertainty, while extreme droughts are predicted to be more frequent and intense. Here, in this study, the potential of temporal autocorrelation of high-frequency variability in Landsat Enhanced Vegetation Index (EVI), an indicator of ecosystem resilience, to predict spatial and temporal variations of forest biomass mortality is evaluated against in situ census observations for 64 site-year combinations in Costa Rican tropical dry forests during the 2015 ENSO drought. Temporal autocorrelation, within the optimal moving window of 24 months, demonstrated robust predictive power for in situ mortality (leave-one- out cross-validation R 2 = 0.54), which allows for estimates of annual biomass mortality patterns at 30 m resolution. Subsequent spatial analysis showed substantial fine-scale heterogeneity of forest mortality patterns, largely driven by drought intensity and ecosystem properties related to plant water use such as forest deciduousness and topography. Highly deciduous forest patches demonstrated much lower mortality sensitivity to drought stress than less deciduous forest patches after elevation was controlled. Our results highlight the potential of high-resolution remote sensing to “fingerprint” forest mortality and the significant role of ecosystem heterogeneity in forest biomass resistance to drought.

59 BASIC BIOLOGICAL SCIENCES↗

Oakridge Geothermal Resources Assessment

Through the Communities Local Energy Action Program (LEAP), NREL provided technical assistance to a coalition of stakeholders from Oakridge, Oregon. The coalition included community-based non-profit organizations, the city government, the local utility, and others. Technical assistance provides analysis and information to support Oakridge stakeholders with their goals to increase energy reliability and resilience in the community, while promoting economic development. The Geothermal Resource Assessment provides technical analysis related to the geothermal resource in the Oakridge area, possible technology applications, and information related to further geothermal exploration. Technical analysis includes a review of a previous geothermal study conducted for Oakridge, thermal modeling to estimate reservoir temperatures, and technoeconomic simulation of a combined heat and power application in the Oakridge area.

15 GEOTHERMAL ENERGY↗

Physics-based hybrid machine learning for critical heat flux prediction with uncertainty quantification

Critical heat flux (CHF) is a key quantity in nuclear system modeling due to its impact on heat transfer, safety margins, and reactor performance. This study develops and validates an uncertainty-aware hybrid modeling approach that combines machine learning with physics-based models to predict CHF in cases of dryout. The Biasi and Bowring empirical correlations were paired with three ML uncertainty quantification (UQ) techniques: deep neural network (DNN) ensembles, Bayesian neural networks (BNNs), and deep Gaussian processes (DGPs). A pure ML model without a base model was evaluated for comparison. Model performance was assessed under plentiful (7,350 points) and limited (9 points) training data scenarios using parity, uncertainty distributions, and calibration curves. Results show that the Biasi hybrid DNN ensemble achieved the best overall performance, with a mean absolute relative error of 1.846%, and well-calibrated uncertainty estimates. The BNN-based hybrids showed slightly higher error (2.14%) but superior uncertainty calibration. DGP models underperformed, with over 6% error and poor uncertainty calibration. All hybrid models outperformed pure machine learning configurations, demonstrating resistance against data scarcity. These findings indicate that hybrid modeling significantly improves predictive accuracy, interpretability, and resilience to data scarcity. The integration of uncertainty awareness provides actionable confidence in CHF predictions, which is vital for safety-critical decisions in nuclear applications. This hybrid approach offers a viable pathway for deploying ML models in reactor analysis tools while preserving domain knowledge and physical consistency.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Qubit-efficient entanglement spectroscopy using qubit resets

One strategy to fit larger problems on NISQ devices is to exploit a tradeoff between circuit width and circuit depth. Unfortunately, this tradeoff still limits the size of tractable problems since the increased depth is often not realizable before noise dominates. Here, we develop qubit-efficient quantum algorithms for entanglement spectroscopy which avoid this tradeoff. In particular, we develop algorithms for computing the trace of the n -th power of the density operator of a quantum system, T r ( ρ n ) , (related to the Rényi entropy of order n ) that use fewer qubits than any previous efficient algorithm while achieving similar performance in the presence of noise, thus enabling spectroscopy of larger quantum systems on NISQ devices. Our algorithms, which require a number of qubits independent of n , are variants of previous algorithms with width proportional to n , an asymptotic difference. The crucial ingredient in these new algorithms is the ability to measure and reinitialize subsets of qubits in the course of the computation, allowing us to reuse qubits and increase the circuit depth without suffering the usual noisy consequences. We also introduce the notion of effective circuit depth as a generalization of standard circuit depth suitable for circuits with qubit resets. This tool helps explain the noise-resilience of our qubit-efficient algorithms and should aid in designing future algorithms. We perform numerical simulations to compare our algorithms to the original variants and show they perform similarly when subjected to noise. Additionally, we experimentally implement one of our qubit-efficient algorithms on the Honeywell System Model H0, estimating T r ( ρ n ) for larger n than possible with previous algorithms.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Ultracoherent SRF Cavity-Based Multi-Qudit Platform with Error-Resilient Control

Superconducting radio-frequency (SRF) cavities offer a promising platform for quantum computing due to their long coherence times, yet integrating nonlinear elements like transmons for control often introduces additional loss. We report a multimode quantum system based on a 2-cell elliptical shaped SRF cavity, comprising two cavity modes weakly coupled to an ancillary transmon circuit, designed to preserve coherence while enabling efficient control of the cavity modes. We mitigate the detrimental effects of the transmon decoherence through careful design optimization that reduces transmon-cavity couplings and participation in the dielectric substrate and lossy interfaces, to achieve single-photon lifetimes of 20.6\,ms and 15.6\,ms for the two modes, and a pure dephasing time exceeding 40\,ms. This marks an order-of-magnitude improvement over prior 3D multimode memories. Leveraging sideband interactions and novel error-resilient protocols, including measurement-based correction and post-selection, we achieve high-fidelity control over quantum states. This enables the preparation of Fock states up to $N = 20$ with fidelities exceeding 95\%, the highest reported to date to the authors' knowledge, as well as two-mode entanglement with an estimated coherence-limited fidelities of 99.9\% after post-selection. These results establish our platform as a robust foundation for quantum information processing, allowing for future extensions to high-dimensional qudit encodings.

Kim, T. [Northwestern U.]↗

Ultracoherent superconducting cavity-based multiqudit platform with error-resilient control

Superconducting radio-frequency (SRF) cavities offer a promising platform for quantum computing due to their long coherence times, yet integrating nonlinear elements like transmons for control often introduces additional loss. We report a multimode quantum system based on a 2-cell elliptical-shaped SRF cavity, comprising two cavity modes weakly coupled to an ancillary transmon circuit, designed to preserve coherence while enabling efficient control of the cavity modes. We mitigate the detrimental effects of the transmon decoherence through careful design optimization that reduces transmon-cavity couplings and participation in the dielectric substrate and lossy interfaces, to achieve single-photon lifetimes of 20.6 ms and 15.6 ms for the two modes, and a pure dephasing time exceeding 40 ms. This marks an order-of-magnitude improvement over prior 3D multimode memories. Leveraging sideband interactions and novel error-resilient protocols, including measurement-based correction and post-selection, we achieve high-fidelity control over quantum states. This enables the preparation of Fock states up to N = 20 with fidelities exceeding 95%, the highest reported to date to the authors' knowledge, as well as two-mode entanglement with an estimated coherence-limited fidelities of 99.9% after post-selection. These results establish our platform as a robust foundation for quantum information processing, allowing for future extensions to high-dimensional qudit encodings.

Lu, Yao [Fermilab] (ORCID:000000020413698X)↗

Ultracoherent superconducting cavity-based multiqudit platform with error-resilient control

Superconducting radio-frequency (SRF) cavities offer a promising platform for quantum computing due to their long coherence times, yet integrating nonlinear elements like transmons for control often introduces additional loss. We report a multimode quantum system based on a 2-cell elliptical-shaped SRF cavity, comprising two cavity modes weakly coupled to an ancillary transmon circuit, designed to preserve coherence while enabling efficient control of the cavity modes. We mitigate the detrimental effects of the transmon decoherence through careful design optimization that reduces transmon-cavity couplings and participation in the dielectric substrate and lossy interfaces, to achieve single-photon lifetimes of 20.6 ms and 15.6 ms for the two modes, and a pure dephasing time exceeding 40 ms. This marks an order-of-magnitude improvement over prior 3D multimode memories. Leveraging sideband interactions and novel error-resilient protocols, including measurement-based correction and post-selection, we achieve high-fidelity control over quantum states. This enables the preparation of Fock states up to N = 20 with fidelities exceeding 95%, the highest reported to date to the authors' knowledge, as well as two-mode entanglement with an estimated coherence-limited fidelities of 99.9% after post-selection. These results establish our platform as a robust foundation for quantum information processing, allowing for future extensions to high-dimensional qudit encodings.

Lu, Yao [Fermilab] (ORCID:000000020413698X)↗

Ultracoherent superconducting cavity-based multiqudit platform with error-resilient control

Superconducting radio-frequency (SRF) cavities offer a promising platform for quantum computing due to their long coherence times, yet integrating nonlinear elements like transmons for control often introduces additional loss. We report a multimode quantum system based on a 2-cell elliptical shaped SRF cavity, comprising two cavity modes weakly coupled to an ancillary transmon circuit, designed to preserve coherence while enabling efficient control of the cavity modes. We mitigate the detrimental effects of the transmon decoherence through careful design optimization that reduces transmon-cavity couplings and participation in the dielectric substrate and lossy interfaces, to achieve single-photon lifetimes of 20.6 ms and 15.6 ms for the two modes, and a pure dephasing time exceeding 40 ms. This marks an order-of-magnitude improvement over prior 3D multimode memories. Leveraging sideband interactions and novel error-resilient protocols, including measurement-based correction and post-selection, we achieve high-fidelity control over quantum states. This enables the preparation of Fock states up to $N = 20$ with fidelities exceeding 95%, the highest reported to date to the authors' knowledge, as well as two-mode entanglement with an estimated coherence-limited fidelities of 99.9% after post-selection. These results establish our platform as a robust foundation for quantum information processing, allowing for future extensions to high-dimensional qudit encodings.

Kim, Taeyoon [Fermilab; Northwestern U.]↗

System and component development for long-duration energy storage using particle thermal energy storage

Energy storage, at various scales, will be required to maintain reliable power supply from variable renewable resources, and improve grid resilience. Long-duration energy storage (10-100 h) can substitute baseload coal power generation and increase levels of renewable power supply. Thermal energy storage (TES) has siting flexibility and the ability to store a large capacity of energy, and thus it has the potential to meet the needs of long-duration energy storage. Here, a novel TES system was developed by using solid particles as storage media and charging/discharging electricity from renewable power connected via the electric grid. The particle TES uses low-cost silica sand at 30-40$/Ton that is stable at high temperatures of >1,000 degrees C. Thus, the particle TES system has an overall low storage cost and high thermal-power efficiency. Key components of the system were conceptually designed and modeled for their performance. Conversion of electricity to thermal energy using electric heating can achieve a >98% charging efficiency, and the conversion of thermal energy back to electricity uses an air-Brayton combined power cycle with >52% thermal-to-electricity efficiency at >1,170 degrees C to achieve a >50% roundtrip efficiency after subtracting estimated plant parasitic losses. Laboratory-scale prototypes were fabricated and tested to verify their design approaches and operations relevant to product-scale components.

25 ENERGY STORAGE↗

Resilience Measurement Framework For Post-deployment Artificial Intelligence (ai) Integrated Systems

Resilience is largely defined as the ability to adapt or recover from adverse conditions, stresses, attacks, or compromises on systems that use or are enabled by digital resources. In Artificial Intelligence Management and Research for Advanced Networked Testbed Hub (AMARANTH), resilience is measured in the amount of time it took from the beginning of a testing period for the model to reach predictions outside of the original 95% confidence interval or using the Kullback-Leibler (KL) divergence theorem, the Population Stability Index (PSI), and traditional methods such as root mean squared error (RMSE) threshold. Artificial Intelligence (AI) model drift is of significant concern when deploying AI-integrated systems into critical and/or secure environments. Drift can impact resilience of the AI-integrated system post-deployment and requires consistent maintenance and upkeep to ensure the model is accurate and precise. To quantify model drift and predict the point when a model's drift becomes unacceptable, we describe using Kullback-Leibler (KL) divergence, Population Stability Index (PSI) and/or confidence interval width estimations to determine the point of failure and time to failure of a model post-deployment. Through simple code functions, the KL-divergence, PSI, confidence interval, and root mean squared (RMSE) point of failures can be used to derive when a model needs to be maintained as well as the impact of adversarial action through statistical means.

Yockey, Patience [Idaho National Laboratory (INL),↗

Structural complexity and primary production resistance are coupled in a temperate forest

The capacity of forests to resist structural change and retain material legacies–the biotic and abiotic resources that persist through disturbance–is crucial to sustaining ecosystem function after disturbance. However, the role of forest structure as both a material legacy and feature supporting carbon (C) cycling stability following disturbance has not been widely investigated. We used a large-scale disturbance manipulation to ask whether legacies of lidar-derived canopy structures drive 3-year primary production responses to disturbance. As part of the Forest Resilience Threshold Experiment (FoRTE) in northern Michigan, USA we simulated phloem-disrupting disturbances producing a range of severities and affecting canopy trees of different sizes. We quantified the legacies of forest structure using two approaches: one measuring the change in structure and primary production from pre-to post-disturbance and the second estimating resistance as log transformed ratios of control and treatment values. We found that total aboveground wood net primary production (ANPP w ) was similar across disturbance severities as legacy trees rapidly increased rates of primary production. Experiment-wide, the disturbance had limited effects on change in mean structural complexity values; however, high variance underscored large differences in the magnitude and direction of complexity's response at the plot-scale. Plot-scale structural complexity, but not vegetation area index (VAI), resistance strongly predicted ANPP w resistance while temporal VAI and structural complexity changes did not. We conclude that the presence of material legacies in the form of forest structure may affect primary production stability following disturbance and that how legacies are quantified may affect the interpretation of disturbance response.

lidar—remote sensing↗

Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0

Biocuration is essential to transform molecular sequence data into standardized, machine-readable resources. Such curated datasets enable comparative analysis, predictive modeling, and data integration across bioinformatics platforms. While professional biocuration is resource-intensive and usually limited to institutional settings, community-driven approaches can mobilize large-scale annotation of specialized datasets and are more resilient to disruptions in scientific funding. Here, we present a model for community-powered curation applied to the Minimum Information about a Biosynthetic Gene Cluster (MIBiG) repository. Through a framework of workflows for metadata capture, annotation validation, and contributor coordination, the MIBiG 4.0 initiative recruited 267 scientists across 178 institutions from 33 countries, volunteering an estimated 4000 h of work. These efforts expanded the MIBiG repository by 22% and enhanced its usability in downstream molecular data analyses in comparative genomic analyses, natural product discovery, and machine learning applications. We provide strategies and actionable lessons for adopting this model, supporting the sustainability of curated bioinformatics resources central to nucleic acid research and related fields.

biocuration↗

County-level assessment of behind-the-meter solar and storage to mitigate long duration power interruptions for residential customers

Customer concerns over electric system resilience could drive early adoption of behind-the-meter solar-plus-storage (BTM PVESS), especially as wildfire, hurricane, and other climate-driven risks to electric grids become more pronounced. However, the resilience benefits of BTM PVESS are poorly understood, especially for residential customers, owing to lack of data and methodological challenges, making it difficult to forecast adoption trends. In this paper, we develop a methodology to model the performance of BTM PVESS in providing backup power across a wide range of customer types, geography / climate conditions, and long duration power interruption scenarios, considering both whole-building backup and backup of specific critical loads. We combine novel, disaggregated end-use load profiles across the continental United States with temporally and geospatially aligned solar generation estimates. We then implement a PVESS dispatch algorithm to calculate the amount of load served during interruptions. We find that PVESS with 10 kWh of storage can meet a limited set of critical loads in most United States counties during any month of the year, though this capability drops to meeting only 86% of critical load, averaged across all counties and months, when heating and cooling are considered critical. Backup performance is lowest in winter months where electric heat is common (southeast and northwest U.S.) and in summer months in places with large cooling loads (southwest and southeast U.S.). Winter backup performance varies by roughly 20% depending on infiltration rates, while summer performance varies by close to 15% depending on the efficiency of the central air-conditioning system. Differences in temperature set-points in Harris County correspond to a 40% range in winter backup performance and a 20% range in summer performance. Economic calculations show that a customer’s resilience value of PVESS must be high to motivate adoption of these systems.

14 SOLAR ENERGY↗

Increased salinity decreases annual gross primary productivity at a Northern California brackish tidal marsh

Tidal marshes sequester 11.4–87.0 Tg C yr –1 globally, but climate change impacts can threaten the carbon capture potential of these ecosystems. Tidal marshes occur across a wide range of salinity, with brackish marshes (0.5–18 ppt (parts per thousand)) dominating global tidal marsh extents. A diverse mix of freshwater- and saltwater-tolerant plant and microbial communities has led researchers to predict that carbon cycling in brackish wetlands may be less sensitive to changes in salinity than fresh- or saltwater wetlands. Rush Ranch, a well-monitored brackish tidal wetland of the San Francisco Bay National Estuarine Research Reserve, experiences highly variable annual salinity regimes. Within a five-year period (2014–2018), Rush Ranch experienced particularly extreme drought-induced salinization during the 2014 and 2015 growing seasons. During drought years, tidal channel salinity rose from a 15 year baseline of 4.7 ppt to growing season peaks of 10.3 ppt and 12.5 ppt. Continuous eddy covariance data from 2014 to 2018 demonstrate that during drought summers, gross primary productivity (GPP) decreased by 24%, whereas ecosystem respiration remained similar among all five years. Stepwise linear regression revealed that salinity, not air temperature or tidal height, was the dominant driver of annual GPP. A random forest model trained to predict GPP based on environmental data from low salinity years (i.e. naive to salinization) significantly over predicted GPP in drought years. When growing season salinities were doubled, annual estimates of net ecosystem exchange of CO 2 decreased by up to 30%. These results provide ecosystem-scale evidence that increased salinity influences CO 2 fluxes dominantly through reductions in GPP. This relationship provides a starting point for incorporating the effect of changes in salinity in wetland carbon models, which could improve wetland carbon forecasting and management for climate resilience.

54 ENVIRONMENTAL SCIENCES↗

RePOWERD: Restoration of Power Outage from Wide-area Severe Weather Disruptions

The purpose of the RePOWERD project is to develop a probabilistic and a simulation based power restoration forecasting model for tropical storms based on geographic utility service areas, impacts to energy infrastructures and transportation networks, time-varying customer outage number, crew information (i.e., crew size, crew staging requirements), and utility restoration plans. Energy infrastructure is a critical lifeline essential for the United States’ national and economic security. Like other critical infrastructures, this infrastructure is aging and is at a high risk of damages from extreme weather events. Based on the number of reported outages in EAGLE-I during 2020 and 2021, it is evident that the current energy infrastructure is not equipped to handle extreme event impacts and will contribute to significant outages. From a resilience perspective, it is essential to forecast restoration time in the event of a severe weather induced power outage to assist the US Department of Energy, emergency managers, and first responders with resource planning. This project contributes to this crucial need. This report details the models, that were developed in this pilot study, to determine the rate of restoration and estimated time of restoration (ETR) during tropical storm events within counties and utility service areas based on damage to energy infrastructures and total number of customers experiencing outages.

24 POWER TRANSMISSION AND DISTRIBUTION↗