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At least 181 records · Page 10

Rainier Mesa/Shoshone Mountain Hydrostratigraphic Framework Model-Prime Model Model Development Process and Model Description, Revision 0

This document presents the results of revisions to the Rainier Mesa/Shoshone Mountain (RM/SM) hydrostratigraphic framework model (HFM) that was constructed for Corrective Action Unit (CAU) 99: Rainier Mesa/Shoshone Mountain. The revised HFM is described as the “RM/SM HFM-Prime” and serves as the base HFM. The modeling efforts and the revisions described in this report have been performed as part of the Underground Test Area (UGTA) Activity that was initiated by the U.S. Department of Energy (DOE), National Nuclear Security Administration Nevada Field Office (NNSA/NFO) to assess and evaluate the effects of the underground nuclear tests on groundwater at the Nevada National Security Site (NNSS) and vicinity. This document builds on the content of the internal Hydrostratigraphic Framework Model of the Rainier Mesa Area Phase I' - Base Model: Model Development Process & Data Package Description (N-I, 2014a) and specific document review comments from the UGTA RM/SM CAU Preemptive Review members (Zavarin, 2015). This document provides, where necessary, the justifications and rationale for interpretations and revisions to the hydrostratigraphic framework of the RM/SM CAU. The fundamental objective of the effort described in this report was to revise the RM/SM HFM, particularly in the areas and vicinity of the sub-CAU models, in order to incorporate some of the higher-resolution hydrogeologic interpretations used to construct several of the sub-CAU scale flow and transport models.

54 ENVIRONMENTAL SCIENCES↗

The Influence of Microbial Priming Effects on the Hydro-bio-geochemistry of Large River Reservoirs

River-tributary confluences, where diverse organic matter (OM) sources mix, are considered aquatic critical zones for biogeochemical cycling. Here we evaluate dissolved OM composition and bioavailability in the mainstem of the Columbia River and three of its tributaries (Snake, Yakima, and Walla Walla rivers) along a hydrologic gradient in the Columbia River drainage basin using a variety of bulk and molecular level measurements. Field replicates and mixtures representing river-tributary confluences were incubated in the dark for 15 days to investigate the response of the microbial community to varying OM quantity/composition. The Columbia, Snake, and Yakima rivers did not differ in dissolved organic carbon (DOC), fluorescent dissolved OM (fDOM), or Chlorophyll-a (Chl-a) concentrations. However, the Walla Walla River had significantly greater DOC, fDOM, and Chl-a concentrations, indicative of greater contributions from algal DOM. FT-ICR-MS spectra for Walla Walla had significantly more peaks corresponding to amino sugars, carbohydrates and proteins while the Columbia River had more peaks for lignin, unsaturated hydrocarbons, and condensed aromatics. When incubated for 15 days in the dark, total DOC did not decrease for any of the river samples. DOC did decrease, however, in a mix representing the confluence of the Columbia and Walla Walla rivers, suggesting the microbial consortia of the Columbia River were primed by the Walla Walla River OM. OM composition was significantly different for several compound classes (e.g., lignin, protein, and tannin) following the incubations of unmixed river and tributary samples. However, the microbial community in the Walla Walla-Columbia mixture appeared to be indiscriminate of the molecular structure of the DOM as the compound class distribution did not change significantly. This provides preliminary evidence that the heterotrophs in river-tributary critical zones remineralize diverse OM structures.

54 ENVIRONMENTAL SCIENCES↗

Re-Engineering the Mission Operations System (MOS) for the Prime and Extended Mission

One of the most challenging tasks in a space science mission is designing the Mission Operations System (MOS). Whereas the focus of the project is getting the spacecraft built and tested for launch, the mission operations engineers must build a system to carry out the science objectives. The completed MOS design is then formally assessed in the many reviews. Once a mission has completed the reviews, the Mission Operation System (MOS) design has been validated to the Functional Requirements and is ready for operations. The design was built based on heritage processes, new technology, and lessons learned from past experience. Furthermore, our operational concepts must be properly mapped to the mission design and science objectives. However, during the course of implementing the science objective in the operations phase after launch, the MOS experiences an evolutional change to adapt for actual performance characteristics. This drives the re-engineering of the MOS, because the MOS includes the flight and ground segments. Using the Spitzer mission as an example we demonstrate how the MOS design evolved for both the prime and extended mission to enhance the overall efficiency for science return. In our re-engineering process, we ensured that no requirements were violated or mission objectives compromised. In most cases, optimized performance across the MOS, including gains in science return as well as savings in the budget profile was achieved. Finally, we suggest a need to better categorize the Operations Phase (Phase E) in the NASA Life-Cycle Phases of Formulation and Implementation

Extended Mission↗

Thermal Effects of Pressure Surge and Adiabatic Compression in the Priming of Propulsion and Propellant Transfer Systems

Surge pressures and adiabatic compression during priming of evacuated lines in propulsion and propellant transfer systems has been considered. Test data were obtained for desaturated and saturated water for surge pressures and adiabatic compression for various supply pressures and temperatures. Scaling of surge pressures a t different temperatures has been carried out with the aid of Joukowsky model. The thermal effects associated with surge pressure and the attendant adiabatic compression have been investigated with the a id of a simplified analytical model, which represents an extension of the model developed by Lecourt and Steelant. It has been shown that the predictions from the model compare satisfactorily with test data for a water/helium system, and existing test data for different liquid/gas combinations.

Pressure Surge↗

Next Day Building Load Predictions based on Limited Input Features Using an On-Line Laterally Primed Adaptive Resonance Theory Artificial Neural Network.

Optimal integration of thermal energy storage within commercial building applications requires accurate load predictions. Several methods exist that provide an estimate of a buildings future needs. Methods include component-based models and data-driven algorithms. This work implemented a previously untested algorithm for this application that is called a Laterally Primed Adaptive Resonance Theory (LAPART) artificial neural network (ANN). The LAPART algorithm provided accurate results over a two month period where minimal historical data and a small amount of input types were available. These results are significant, because common practice has often overlooked the implementation of an ANN. ANN have often been perceived to be too complex and require large amounts of data to provide accurate results. The LAPART neural network was implemented in an on-line learning manner. On-line learning refers to the continuous updating of training data as time occurs. For this experiment, training began with a singe day and grew to two months of data. This approach provides a platform for immediate implementation that requires minimal time and effort. The results from the LAPART algorithm were compared with statistical regression and a component-based model. The comparison was based on the predictions linear relationship with the measured data, mean squared error, mean bias error, and cost savings achieved by the respective prediction techniques. The results show that the LAPART algorithm provided a reliable and cost effective means to predict the building load for the next day.

25 ENERGY STORAGE↗

Measurement of CP asymmetries in ${D}_{(s)}^{+}\to \eta {\pi}^{+}$ and ${D}_{(s)}^{+}\to {\eta}^{\prime }{\pi}^{+}$ decays

Searches for CP violation in the decays ${D}_{(s)}^{+}\to \eta {\pi}^{+}$ and ${D}_{(s)}^{+}\to {\eta}^{\prime }{\pi}^{+}$ are performed using pp collision data corresponding to 6 fb –1 of integrated luminosity collected by the LHCb experiment. The calibration channels ${D}_{(s)}^{+}\to \phi {\pi}^{+}$ are used to remove production and detection asymmetries. The resulting CP-violating asymmetries are $\mathcal{A}^{CP} = (D^+ \to ηπ^+) = (0.34 ± 0.66 ± 0.16 ± 0.05)$ %, $\mathcal{A}^{CP} = (D^+_s \to ηπ^+) = (0.32 ± 0.51 ± 0.12)$ %, $\mathcal{A}^{CP} = (D^+ \to η'π^+) = (0.49 ± 0.18 ± 0.06 ± 0.05)$ %, $\mathcal{A}^{CP} = (D^+_s \to η'π^+) = (0.01 ± 0.12 ± 0.08)$ %, where the first uncertainty is statistical, the second is systematic and the third, relevant for the D + channels, is due to the uncertainty on ${\mathcal{A}}^{CP}=\left({D}^{+}\to \phi {\pi}^{+}\right)$. These measurements, currently the most precise for three of the four channels considered, are consistent with the absence of CP violation. A combination of these results with previous LHCb measurements is presented.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Design of Circular, Square, Single, and Multi-layer Induction Coils for Electromagnetic Priming Using Inductance Estimates

Special induction coils used for electro magnetic priming of ceramic foam filters in liquid metal filtration have been designed using a combination of analytical and finite element modeling. Relatively simple empirical equations published by Wheeler in 1928 and 1982 have been used during the design process. The equations were found to accurately predict the z-component of the magnetic flux densities of both single- and multi-layer coils as verified both experimentally and by using COMSOL{sup ®} 5.1 multiphysics simulations.

36 MATERIALS SCIENCE↗

A heterologous prime-boosting strategy with replicating Vaccinia virus vectors and plant-produced HIV-1 Gag/dgp41 virus-like particles

Showing modest efficacy, the RV144 HIV-1 vaccine clinical trial utilized a non-replicating canarypox viral vector and a soluble gp120 protein boost. Here we built upon the RV144 strategy by developing a novel combination of a replicating, but highly-attenuated Vaccinia virus vector, NYVAC-KC, and plant-produced HIV-1 virus-like particles (VLPs). Both components contained the full-length Gag and a membrane anchored truncated gp41 presenting the membrane proximal external region with its conserved broadly neutralizing epitopes in the pre-fusion conformation. We tested different prime/boost combinations of these components in mice and showed that the group primed with NYVAC-KC and boosted with both the viral vectors and plant-produced VLPs have the most robust Gag-specific CD8 T cell responses, at 12.7% of CD8 T cells expressing IFN-γ in response to stimulation with five Gag epitopes. The same immunization group elicited the best systemic and mucosal antibody responses to Gag and dgp41 with a bias towards IgG1. - Highlights: • We devised a prime/boost anti HIV-1 vaccination strategy modeled after RV144. • We used plant-derived virus-like particles (VLPs) consisting of Gag and dgp41. • We used attenuated, replicating vaccinia virus vectors expressing the same antigens. • The immunogens elicited strong cellular and humoral immune responses.

60 APPLIED LIFE SCIENCES↗

Substrate Binding Induces Conformational Changes in a Class A β-lactamase That Prime It for Catalysis

Here, the emergence and dissemination of bacterial resistance to β-lactam antibiotics via β-lactamase enzymes is a serious problem in clinical settings, often leaving few treatment options for infections resulting from multidrug-resistant superbugs. Understanding the catalytic mechanism of β-lactamases is important for developing strategies to overcome resistance. Binding of a substrate in the active site of an enzyme can alter the conformations and p K a s of catalytic residues, thereby contributing to enzyme catalysis. Here we report X-ray and neutron crystal structures of the class A Toho-1 β-lactamase in the apo form and an X-ray structure of a Michaelis-like complex with the cephalosporin antibiotic cefotaxime in the active site. Comparison of these structures reveals that substrate binding induces a series of changes. The side chains of conserved residues important in catalysis, Lys73 and Tyr105, and the main chain of Ser130 alter their conformations, with Nζ of Lys73 moving closer to the position of the conserved catalytic nucleophile Ser70. This movement of Lys73 closer to Ser70 is consistent with proton transfer between the two residues prior to acylation. In combination with the tightly bound catalytic water molecule located between Glu166 and the position of Ser70, the enzyme is primed for catalysis when Ser70 is activated for nucleophilic attack of the β-lactam ring. Quantum mechanical/molecular mechanical (QM/MM) free energy simulations of models of the wild-type enzyme show that proton transfer from the Nζ of Lys73 to the Oε2 atom of Glu166 is more thermodynamically favorable than when it is absent. Taken together, our findings indicate that substrate binding enhances the favorability of the initial proton transfer steps that precede the formation of the acyl-enzyme intermediate.

59 BASIC BIOLOGICAL SCIENCES↗

Vegetation Type and Decomposition Priming Mediate Brackish Marsh Carbon Accumulation Under Interacting Facets of Global Change

Coastal wetland carbon pools are globally important, but their response to interacting facets of global change remain unclear. Numerical models neglect species-specific vegetation responses to sea level rise (SLR) and elevated CO 2 (eCO 2 ) that are observed in field experiments, while field experiments cannot address the long-term feedbacks between flooding and soil growth that models show are important. Here, we present a novel numerical model of marsh carbon accumulation parameterized with empirical observations from a long-running eCO 2 experiment in an organic rich, brackish marsh. Model results indicate that eCO 2 and SLR interact synergistically to increase soil carbon burial, driven by shifts in plant community composition and soil volume expansion. Furthermore, newly parameterized interactions between plant biomass and decomposition (i.e. soil priming) reduce the impact of eCO 2 on marsh survival, and by inference, the impact of eCO 2 on soil carbon accumulation.

54 ENVIRONMENTAL SCIENCES↗

Priming self-assembly pathways by stacking block copolymers

Abstract Block copolymers spontaneously self-assemble into well-defined nanoscale morphologies. Yet equilibrium assembly gives rise to a limited set of structures. Non-equilibrium strategies can, in principle, expand diversity by exploiting self-assembly’s responsive nature. In this vein, we developed a pathway priming strategy combining control of thin film initial configurations and ordering history. We sequentially coat distinct materials to form prescribed initial states, and use thermal annealing to evolve these manifestly non-equilibrium states through the assembly landscape, traversing normally inaccessible transient structures. We explore the enormous associated hyperspace, spanning processing (annealing temperature and time), material (composition and molecular weight), and layering (thickness and order) dimensions. We demonstrate a library of exotic non-native morphologies, including vertically-oriented perforated lamellae, aqueduct structures (vertical lamellar walls with substrate-pinned perforations), parapets (crenellated lamellae), and networks of crisscrossing lamellae. This enhanced structural control can be used to modify functional properties, including accessing regimes that surpass their equilibrium analogs.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains

The vaccine elicitation of HIV tier-2-neutralization antibodies has been a challenge. Here, we report the isolation and characterization of a CD4-binding site (CD4bs) specific monoclonal antibody, HmAb64, from a human volunteer immunized with a polyvalent DNA prime-protein boost HIV vaccine. HmAb64 is derived from heavy chain variable germline gene IGHV1-18 and light chain germline gene IGKV1-39. It has a third heavy chain complementarity-determining region (CDR H3) of 15 amino acids. On a cross-clade panel of 208 HIV-1 pseudo-virus strains, HmAb64 neutralized 20 (10%), including tier-2 strains from clades B, BC, C, and G. The cryo-EM structure of the antigen-binding fragment of HmAb64 in complex with a CNE40 SOSIP trimer revealed details of its recognition; HmAb64 uses both heavy and light CDR3s to recognize the CD4-binding loop, a critical component of the CD4bs. This study demonstrates that a gp120-based vaccine can elicit antibodies capable of tier 2-HIV neutralization.

60 APPLIED LIFE SCIENCES↗

Quantum Annealing for Prime Factorization

We have developed a framework to convert an arbitrary integer factorization problem to an executable Ising model by first writing it as an optimization function then transforming the k-bit coupling (k ≥ 3) terms to quadratic terms using ancillary variables. Our resource-efficient method uses O (log 2 ( N )) binary variables (qubits) for finding the factors of an integer N. We present how to factorize 15, 143, 59989, and 376289 using 4, 12, 59, and 94 logical qubits, respectively. This method was tested using the D-Wave 2000Q for finding an embedding and determining the prime factors for a given composite number. The method is general and could be used to factor larger integers as the number of available qubits increases, or combined with other ad hoc methods to achieve better performances for specific numbers.

97 MATHEMATICS AND COMPUTING↗

Simulation studies on the standing and traveling wave thermoacoustic prime movers

Thermoacoustic systems have been a focus of recent research due to its structural simplicity, high reliability due to absence of moving parts, and can be driven by low grade energy such as fuel, gas, solar energy, waste heat etc. There has been extensive research on both standing wave and traveling wave systems. Towards the development of such systems, simulations can be carried out by several methods such as (a) solving the energy equation, (b) enthalpy flow model, (c) DeltaEC, a free software available from LANL, USA (d) Computational Fluid Dynamics (CFD) etc. We present here the simulation studies of standing wave and traveling wave thermoacoustic prime movers using CFD and DeltaEC. The CFD analysis is carried out using Fluent 6.3.26, incorporating the necessary boundary conditions with different working fluids at different operating pressures. The results obtained by CFD are compared with those obtained using DeltaEC. Also, the CFD simulation of the thermoacoustically driven refrigerator is presented.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Positive approach: Implications for the relation between number theory and geometry, including connection to Santilli mathematics, from Fibonacci reconstitution of natural numbers and of prime numbers

The paper recapitulates some key elements in previously published results concerning exact and complete reconstitution of the field of natural numbers, both as ordinal and as cardinal numbers, from systematic unfoldment of the Fibonacci algorithm. By this natural numbers emerge as Fibonacci 'atoms' and 'molecules' consistent with the notion of Zeckendorf sums. Here, the sub-set of prime numbers appears not as the primary numbers, but as an epistructure from a deeper Fibonacci constitution, and is thus targeted from a 'positive approach'. In the Fibonacci reconstitution of number theory natural numbers show a double geometrical aspect: partly as extension in space and partly as position in a successive structuring of space. More specifically, the natural numbers are shown to be distributed by a concise 5:3 code structured from the Fibonacci algorithm via Pascal's triangle. The paper discusses possible implications for the more general relation between number theory and geometry, as well as more specifically in relation to hadronic mathematics, initiated by R.M. Santilli, and also briefly to some other recent science linking number theory more directly to geometry and natural systems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Mechanism of RanGTP priming H2A-H2B release from Kap114 in an atypical RanGTP•Kap114•H2A-H2B complex

Previously, we showed that the nuclear import receptor Importin-9 wraps around the H2A-H2B core to chaperone and transport it from the cytoplasm to the nucleus. However, unlike most nuclear import systems where RanGTP dissociates cargoes from their importins, RanGTP binds stably to the Importin-9•H2A-H2B complex, and formation of the ternary RanGTP•Importin-9•H2A-H2B complex facilitates H2A-H2B release to the assembling nucleosome. It was unclear how RanGTP and the cargo H2A-H2B can bind simultaneously to an importin, and how interactions of the three components position H2A-H2B for release. Here, we show cryo-EM structures of Importin-9•RanGTP and of its yeast homolog Kap114, including Kap114•RanGTP, Kap114•H2A-H2B, and RanGTP•Kap114•H2A-H2B, to explain how the conserved Kap114 binds H2A-H2B and RanGTP simultaneously and how the GTPase primes histone transfer to the nucleosome. In the ternary complex, RanGTP binds to the N-terminal repeats of Kap114 in the same manner as in the Kap114/Importin-9•RanGTP complex, and H2A-H2B binds via its acidic patch to the Kap114 C-terminal repeats much like in the Kap114/Importin-9•H2A-H2B complex. Ran binds to a different conformation of Kap114 in the ternary RanGTP•Kap114•H2A-H2B complex. Here, Kap114 no longer contacts the H2A-H2B surface proximal to the H2A docking domain that drives nucleosome assembly, positioning it for transfer to the assembling nucleosome or to dedicated H2A-H2B chaperones in the nucleus.

59 BASIC BIOLOGICAL SCIENCES↗