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NASA NTRS1990

Platform Management System (PMS) evolution

In fiscal year 1988 a study was begun to define the platform management system (PMS) functions required for the mature platform operations era. The objectives of the task include: (1) defining how to increase the operational productivity of the platform by providing enhanced capability for responding to changing events, (2) influencing the initial PMS design by identifying required 'hooks and scars', and (3) evaluation potential automation techniques that are appropriate given predicted onboard computing resources. Initial platform operations scenarios were defined. The focus was on PMS-related functions where operations enhancements are likely to occur. Operations productivity was defined in terms of scientific productivity of the platform as well as the level of automation of the ground system. The Platform Operations Productivity Enhancement Report was completed earlier this year documenting system enhancements to increase science productivity and ground system automation. Using the baseline PMS defined in the PMS Definition Document as a starting point, the resulting PMS-specific enhancements were molded into a sequence of progressively more sophisticated operations management capabilities. This sequence of upgrades to the PMS has been documented in a PMS Evolution Plan. The plan includes enhancements in the areas of resources scheduling, resource modeling, system and payload anomaly management, and transaction sequence interpretation. A plan for migration of functions from the ground portion of the PMS to the flight portion is also included. The impacts of this plan on the platform are now being documented to ensure that the required 'hooks and scars' are included in the baseline system. Future plans include a prototype of some of the PMS enhancements to address the feasibility of and techniques for implementing these enhancements in the onboard computing environment.

Tilley, Mike↗

NASA NTRS2005

A High-power Electric Propulsion Test Platform in Space

This paper will describe the results of the preliminary phase of a NASA design study for a facility to test high-power electric propulsion systems in space. The results of this design study are intended to provide a firm foundation for subsequent detailed design and development activities leading to the deployment of a valuable space facility. The NASA Exploration Systems Mission Directorate is sponsoring this design project. A team from the NASA Johnson Space Center, Glenn Research Center, the Marshall Space Flight Center and the International Space Station Program Office is conducting the project. The test facility is intended for a broad range of users including government, industry and universities. International participation is encouraged. The objectives for human and robotic exploration of space can be accomplished affordably, safely and effectively with high-power electric propulsion systems. But, as thruster power levels rise to the hundreds of kilowatts and up to megawatts, their testing will pose stringent and expensive demands on existing Earth-based vacuum facilities. These considerations and the human access to near-Earth space provided by the International Space Station (ISS) have led to a renewed interest in space testing. The ISS could provide an excellent platform for a space-based test facility with the continuous vacuum conditions of the natural space environment and no chamber walls to modify the open boundary conditions of the propulsion system exhaust. The test platform could take advantage of the continuous vacuum conditions of the natural space environment. Space testing would provide open boundary conditions without walls, micro-gravity and a realistic thermal environment. Testing on the ISS would allow for direct observation of the test unit, exhaust plume and space-plasma interactions. When necessary, intervention by on-board personnel and post-test inspection would be possible. The ISS can provide electrical power, a location for diagnostic instruments, data handling and thermal control. The platform will be designed to accommodate the side-by-side testing of multiple types of electric thrusters. It is intended to be a permanent facility in which different thrusters can be tested over time. ISS crews can provide maintenance for the platform and change out thruster test units as needed. The primary objective of this platform is to provide a test facility for electric propulsion devices of interest for future exploration missions. These thrusters are expected to operate in the range of hundreds of kilowatts and above. However, a platform with this capability could also accommodate testing of thrusters that require much lower power levels. Testing at the higher power levels would be accomplished by using power fiom storage devices on the platform, which would be gradually recharged by the ISS power generation system. This paper will summarize the results of the preliminary phase of the study with an explanation of the user requirements and the initial conceptual design. The concept for test operations will also be described. The NASA project team is defining the requirements but they will also reflect the inputs of the broader electric propulsion community including those at universities, commercial enterprises and other government laboratories. As a facility on the International Space Station, the design requirements are also intended to encompass the needs of international users. Testing of electric propulsion systems on the space station will help advance the development of systems needed for exploration and could also serve the needs of other customers. Propulsion systems being developed for commercial and military applications could be tested and certification testing of mature thrusters could be accomplished in the space environment.

Petro, Andrew J.↗

NASA NTRS2016

Information Management Platform for Data Analytics and Aggregation (IMPALA) System Design Document

The System Design document tracks the design activities that are performed to guide the integration, installation, verification, and acceptance testing of the IMPALA Platform. The inputs to the design document are derived from the activities recorded in Tasks 1 through 6 of the Statement of Work (SOW), with the proposed technical solution being the completion of Phase 1-A. With the documentation of the architecture of the IMPALA Platform and the installation steps taken, the SDD will be a living document, capturing the details about capability enhancements and system improvements to the IMPALA Platform to provide users in development of accurate and precise analytical models. The IMPALA Platform infrastructure team, data architecture team, system integration team, security management team, project manager, NASA data scientists and users are the intended audience of this document. The IMPALA Platform is an assembly of commercial-off-the-shelf (COTS) products installed on an Apache-Hadoop platform. User interface details for the COTS products will be sourced from the COTS tools vendor documentation. The SDD is a focused explanation of the inputs, design steps, and projected outcomes of every design activity for the IMPALA Platform through installation and validation.

Carnell, Andrew↗

NASA NTRSDate not supplied

Biomass Harmonization and SAR Analysis with the Multi-mission Algorithm and Analysis Platform (MAAP)

The Multi‐mission Algorithm and Analysis Platform (MAAP) is a collaborative effort between NASA and the European Space Agency (ESA) to support above ground biomass (AGB) research in an open science framework. MAAP brings together relevant data, algorithms, and computing capabilities in a common cloud environment to address the challenges of sharing and processing data from field, airborne and satellite measurements. MAAP was publicly released in October 2021, providing computing capabilities co-located with the data, a collaborative coding and analysis environment, and a set of interoperable tools and algorithms developed to support the estimation and visualization of data. MAAP has allowed scientists from both North America and Europe to collaborate on the generation and analysis/visualization of data derived from multiple, discipline-adjacent missions in an open, collaborative environment that has reached beyond traditional scientific investigation. MAAP has been used to support multiple scientific activities. To date, existing LiDAR data from multiple platforms has been calibrated with field measurements and combined for more comprehensive and accurate estimates of above ground biomass AGB; these LiDAR platforms include airborne (e.g. LVIS), the International Space Station (NASA’s Global Ecosystem Dynamics Investigation (GEDI), and satellites (e.g. ICESat-2). The current challenge is to effectively and seamlessly combine the aforementioned LiDAR-based data with new data sources such as P-band RADAR from ESA’s upcoming BIOMASS mission, existing ESA Sentinel-1 C-band SAR, and the 30 PB/yr of high cadence global coverage L-band SAR data from the upcoming NASA-ISRO SAR (NISAR) mission. Recent analysis using MAAP merged ICESat-2 and optical data (Harmonized Landsat Sentinel) produced the most comprehensively precise estimate of boreal-wide AGB to date. Another effort using MAAP is the production and open distribution of global comparisons of AGB map estimates, including from ICESat-2 and GEDI, to bolster stakeholder uptake for policy applications. These map estimates will feed into the Intergovernmental Panel on Climate Change (IPCC) database, likely aiding the next Global Carbon Stocktake of the UNFCCC. Furthermore, the biomass retrieval intercomparison exercise BRIX-2 could benefit from the MAAP providing standardized test cases (based on airborne campaign and spaceborne data) allowing the community to develop and apply retrieval algorithms based on these test cases, while forthcoming SAR data training curricula could also use the MAAP as a teaching and learning platform. The MAAP is meeting the challenges inherent in international, open science collaboration and large scale computing with a platform that is entirely open source and cloud native, using open standards for data access, manipulation, protocols, and formats. The MAAP data system consists of a dedicated data store whose data is indexed in an online catalog conforming to established metadata, application programmatic interfaces (APIs), and service interface standards, using an implementation of the open sourced NASA Common Metadata Repository. Federation of user identities allows users from either NASA or ESA to access and consume services from the other using a unified metadata catalog for the data utilized across the ESA and NASA MAAP platforms. Similarly, we are exploring how to increase interoperability to achieve a common approach to packaging, orchestrating and executing algorithms, with interoperable access to data for subsetting, fast browse, and cloud-optimized access, all using interoperable standards such as those from the Open Geospatial Consortium (OGC). Designed for interoperability, ESA and NASA utilize a common architecture for the software platform. It provides a cloud-based algorithm development environment (ADE) that enables scientists to develop algorithms collaboratively with access to the MAAP data catalog as well as other data archives. MAAP provides an Eclipse Che-based ADE supporting both Python and R languages, popular in this biomass community. Algorithms developed and containerized within the ADE can be deployed to run to thousands of computational nodes in the MAAP’s data processing system (DPS), dramatically speeding up processing and giving scientists a rapid, iterative turnaround of results. NASA’s implementation of the DPS is based on the Hybrid Science Data System (HySDS) framework, used by NASA flight projects to produce Earth science standard products.

cloud computing↗

DOE OSTI2011

Concept and architecture of the RHIC LLRF upgrade platform

The goal of the RHIC LLRF upgrade has been the development of a stand alone, generic, high performance, modular LLRF control platform, which can be configured to replace existing systems and serve as a common platform for all new RF systems. The platform is also designed to integrate seamlessly into a distributed network based controls infrastructure, be easy to deploy, and to be useful in a variety of digital signal processing and data acquisition roles. Reuse of hardware, software and firmware has been emphasized to minimize development effort and maximize commonality of system components. System interconnection, synchronization and scaling are facilitated by a deterministic, high speed serial timing and data link, while standard intra and inter chassis communications utilize high speed, non-deterministic protocol based serial links. System hardware configuration is modular and flexible, based on a combination of a main carrier board which can host up to six custom or commercial daughter modules as required to implement desired functionality. This paper will provide an overview of the platform concept, architecture, features and benefits. The RHIC LLRF Upgrade Platform has been developed with the goal of providing a flexible, modular and scalable architecture which will support our current applications and satisfy new ones for the foreseeable future. The platform has been recently commissioned at both RHIC and the RHIC EBIS injector. To date the platform has demonstrated its versatility and utility, meeting the design goals as originally defined.

43 PARTICLE ACCELERATORS↗

DOE OSTI2012

Turbine engine airfoil and platform assembly

A turbine airfoil (22A) is formed by a first process using a first material. A platform (30A) is formed by a second process using a second material that may be different from the first material. The platform (30A) is assembled around a shank (23A) of the airfoil. One or more pins (36A) extend from the platform into holes (28) in the shank (23A). The platform may be formed in two portions (32A, 34A) and placed around the shank, enclosing it. The two platform portions may be bonded to each other. Alternately, the platform (30B) may be cast around the shank (23B) using a metal alloy with better castability than that of the blade and shank, which may be specialized for thermal tolerance. The pins (36A-36D) or holes for them do not extend to an outer surface (31) of the platform, avoiding stress concentrations.

42 ENGINEERING↗

DOE OSTI2018

Radioactive Test Platform Demonstrating the Direct Feed Low-Activity Waste Process at Hanford - 18628

The Hanford Site is implementing a phased process for treating liquid legacy radioactive waste. The process is called the Direct Feed Low-Activity Waste process (DFLAW). The DFLAW includes a filtration and ion-exchange unit in the Low-Activity Waste Pretreatment System (LAWPS) that removes solids and cesium. This pretreat feed is then sent to a vitrification facility where glass-forming solids are added and the waste is turned into glass in a melter. The melter off-gas liquid condensate is evaporated in the Effluent Management Facility (EMF), with the concentrate recycled back into the feed. A laboratory-scale test platform has been built to test various aspects of the DFLAW process using samples of actual radioactive waste. The current platform represents four of the major unit operations: filtration, ion-exchange, vitrification, and off-gas condensation. A lab scale EMF is being designed to supplement the current platform. The platform is expandable to add any or all unit operations. The radioactive test platform has three missions. The first is simply to demonstrate the DFLAW process with real waste. A second objective is to address flowsheet gaps and opportunities, some of which require testing with real waste. Some gaps and opportunities include addressing the fate of mercury in the flowsheet, evaluating salt and aluminum precipitation, and proving new glass formulations with real waste. A third objective of the radioactive test platform is to demonstrate or evaluate future operations and alternative flowsheets. Some of the future operations evaluated will be the life expectancy of the resin in real waste, resin sampling, evaluation of how waste affects melter throughput, and grouting various primary and secondary waste streams. The radioactive test platform is therefore a crucial tool for verifying and optimizing the DFLAW flowsheet at Hanford with real waste. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2016

Report on the Second ARM Mobile Facility (AMF2) Stabilization Platform: Control Strategy and Implementation

One of the primary objectives of the U.S. Department of Energy’s Atmospheric Radiation Measurement (ARM) Climate Research Facility’s second Mobile Facility (AMF2) is to obtain reliable measurements from ocean-going vessels. A pillar of the AMF2 strategy in this effort is the use of a stable platform for those instruments that 1) need to look directly at, or be shaded from, direct sunlight or 2) require a truly vertical orientation. Some ARM instruments that fall into these categories include the Multi-Filter Rotating Shadow Band Radiometer (MFRSR) and the Total Sky Imager (TSI), both of which have a shadow band mechanism, upward-looking radiometry that should be exposed only to the sky, a Microwave Radiometer (MWR) that looks vertically and at specified tilt angles, and vertically pointing radars, for which the vertical component of motion is critically important. During the design and construction phase of AMF2, an inexpensive stable platform was purchased to perform the stabilization tasks for some of these instruments. Computer programs were developed to communicate with the platform controller and with an inertial measurements platform that measures true ship motion components (roll, pitch, yaw, surge, sway, and heave). The platform was then tested on a 3-day cruise aboard the RV Connecticut during June 16-18, 2010, off the east coast of the United States. This initial test period was followed by continued development of the platform control strategy and implementation as time permitted. This is a report of the results of these efforts and the critical points in moving forward.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Benchmarking Real-Time Control Platforms Using a Matlab/Simulink Coder with Applications in the Control of DC/AC Switched Power Converters

In the control of DC/AC switched power converters (SPC), one of the most important aspects to be considered is the selection of the real-time control platform. The real-time control platform must be able to meet the high performance efficiency and regulation requirements of the DC/AC SPC, as these typically operate at switching frequencies in the order of kHz to MHz. For this reason, the hardware characteristics of the ADC and PWM, and the processing capacity of the real-time control platform are of vital importance when implementing advanced digital controllers that maintain voltage and current levels within regulatory standards. In this context, we aimed to perform a comparative study of the computation times of different real-time control platforms when implementing different control strategies for DC/AC switched power converters. We also analyzed the impact of the real-time control platforms on the THD of the voltages generated by the DC/AC switched power converters. With the help of this paper, researchers and developers will have criteria to select which real-time control platform to use in real-time control for DC/AC SPC applications.

42 ENGINEERING↗

DOE OSTI2018

Solar Buyer's Markets: Unlocking Lower Photovoltaic and Battery Prices on Online Quote Platforms

Previous NREL research shows that solar photovoltaic (PV) customers tend to obtain lower installation quote prices on online quote platforms. In new research reported in Solar Buyer's Markets: Unlocking Lower Photovoltaic and Battery Prices on Online Quote Platforms, we corroborate those results using data from the Pick My Solar quote platform. Furthermore, for the first time, we evaluate quote prices for batteries on online quote platforms. Given that few customers currently use quote platforms, we discuss various pathways to increase use of online quote platforms, including developing strategic partnerships, building customer trust, increasing market transparency, and providing quality guarantees.

14 SOLAR ENERGY↗

DOE OSTI2022

Integrated Risk-Informed Condition Based Maintenance Capability and Automated Platform: Technical Report 3

This project is a collaborative research effort between PKMJ Technical Services LLC, Idaho National Laboratory, and Public Service Enterprise Group (PSEG) Nuclear, LLC. The collaboration, led by PKMJ Technical Services LLC, is part of the industry Funding Opportunity Announcement (FOA) award under Advanced Nuclear Technology Development FOA #DE-FOA-0001817. The pilot demonstration focuses on the Circulating Water System (CWS), an important non-safety-related system that impacts the power generation capability of the plant site. Achieving riskinformed condition-based Predictive Maintenance (PdM) on the CWS will result in significant economic benefits, and the developed methodologies can also be applied to other plant systems. This approach supports an industry goal of ensuring that nuclear power generation remains a viable, economically competitive option in the energy market. Operation and Maintenance (O&M) costs include labor-intensive Preventive Maintenance (PM) programs that involve manually performed inspection, calibration, testing, and maintenance of plant assets at periodic frequencies as well as time-based replacement of assets, irrespective of condition. This project offers an alternative by focusing on riskinformed condition-based maintenance to reduce O&M costs while still maintaining plant health and safety. This report summarizes the progress made toward achieving a risk-informed condition-based maintenance approach. The research and development (R&D) activities presented in this report are associated with development of a nuclear digital platform application, integration of fault signature models, and automated work management processes. The fault signatures and Machine Learning (ML) models are key components in predictive analytics and are heavily leveraged to improve the insights received by existing plant process data sources. Availability of the analysis results within a centralized digital platform enhances efficiency by enabling automation of activities otherwise performed manually. Personnel are presented with enhanced information that can be used to evaluate plant status and risks. Utilizing the enhancements to data analytics supports automated responses, (i.e. issuance of work orders) to address developing equipment faults and thus preventing forced, unplanned shutdowns of components or systems. The R&D activities described within this report lay the foundation for developing and demonstrating a digital automated platform to centralize the implementation of condition monitoring and response to equipment faults. The digital automated platform is cloud-based and designed to enable improved efficiency of plant processes. The digital platform includes content related to maintenance optimization, fault signature analysis, and plant records, which can all be used to support efficiencies when located within a centralized digital platform. These efficiencies could be further enhanced when deployed through industry-wide deployment of the technology to improve insights and processes based upon economies of scale.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2021

Floating platform effects on power generation in spar and semisubmersible wind turbines

The design and financing of commercial-scale floating offshore wind projects require a better understanding of how power generation differs between newer floating turbines and well-established fixed-bottom turbines. In floating turbines, platform mobility causes additional rotor motion that can change the time-averaged power generation. In this work, OpenFAST simulations examine the power generated by the National Renewable Energy Laboratory's 5-MW reference turbine mounted on the OC3-UMaine spar and OC4-DeepCWind semisubmersible floating platforms, subjected to extreme irregular waves and below-rated turbulent inflow wind from large-eddy simulations of a neutral atmospheric boundary layer. For these below-rated conditions, average power generation in floating turbines is most affected by two types of turbine displacements: an average rotor pitch angle that reduces power, caused by platform pitch; and rotor motion upwind-downwind that increases power, caused by platform surge and pitch. The relative balance between these two effects determines whether a floating platform causes power gains or losses compared to a fixed-bottom turbine; for example, the spar creates modest (3.1%–4.5%) power gains, whereas the semisubmersible creates insignificant (0.1%–0.2%) power gains for the simulated conditions. Furthermore, platform surge and pitch motions must be analyzed concurrently to fully capture power generation in floating turbines, which is not yet universal practice. Finally, a simple analytical model for predicting average power in floating turbines under below-rated wind speeds is proposed, incorporating effects from both the time-averaged pitch displacement and the dynamic upwind-downwind displacements.

17 WIND ENERGY↗

DOE OSTI2022

A multi-material platform for imaging of single cell-cell junctions under tensile load fabricated with two-photon polymerization

We previously reported a single-cell adhesion micro tensile tester (SCAμTT) fabricated from IP-S photoresin with two-photon polymerization (TPP) for investigating the mechanics of a single cell-cell junction under defined tensile loading. A major limitation of the platform is the autofluorescence of IP-S, the photoresin for TPP fabrication, which significantly increases background signal and makes fluorescent imaging of stretched cells difficult. In this study, we report the design and fabrication of a new SCAμTT platform that mitigates autofluorescence and demonstrate its capability in imaging a single cell pair as its mutual junction is stretched. By employing a two-material design using IP-S and IP-Visio, a photoresin with reduced autofluorescence, we show a significant reduction in autofluorescence of the platform. Further, by integrating apertures onto the substrate with a gold coating, the influence of autofluorescence on imaging is almost completely mitigated. With this new platform, we demonstrate the ability to image a pair of epithelial cells as they are stretched up to 250% strain, allowing us to observe junction rupture and F-actin retraction while simultaneously recording the accumulation of over 800 kPa of stress in the junction. In conclusion, the platform and methodology presented here can potentially enable detailed investigation of the mechanics of and mechanotransduction in cell-cell junctions and improve the design of other TPP platforms in mechanobiology applications.

Autofluorescence↗

DOE OSTI2023

The colliding planar shocks platform to study warm dense matter at the National Ignition Facility

We have developed an experimental platform at the National Ignition Facility that employs colliding planar shocks to produce warm dense matter with uniform conditions and enable high-precision equation of state measurements. The platform uses simultaneous x-ray Thomson scattering and x-ray radiography to measure the density, electron temperature, and ionization state in warm dense matter. The experimental platform is designed to create a large volume of uniform plasma (approximately 700×700×150μm 3 ) at pressures approaching 100 Mbar and minimize the distribution of plasma conditions in the x-ray scattering volume, significantly improving the precision of the measurements. Here, in this study, we present the experimental design of the platform and compare hydrodynamic simulations to x-ray radiography data from initial experiments studying hydrocarbons, producing uniform densities within ±25% of the average probed condition. We show that the platform creates a homogeneous plasma that can be characterized using x-ray Thomson scattering. Thus, the new platform enables accurate measurements of plasma conditions necessary to test models for the equation of state and ionization potential depression in the warm dense matter regime.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2013

PLATFORM DEFORMATION PHASE CORRECTION FOR THE AMiBA-13 COPLANAR INTERFEROMETER

We present a new way to solve the platform deformation problem of coplanar interferometers. The platform of a coplanar interferometer can be deformed due to driving forces and gravity. A deformed platform will induce extra components into the geometric delay of each baseline and change the phases of observed visibilities. The reconstructed images will also be diluted due to the errors of the phases. The platform deformations of The Yuan-Tseh Lee Array for Microwave Background Anisotropy (AMiBA) were modeled based on photogrammetry data with about 20 mount pointing positions. We then used the differential optical pointing error between two optical telescopes to fit the model parameters in the entire horizontal coordinate space. With the platform deformation model, we can predict the errors of the geometric phase delays due to platform deformation with a given azimuth and elevation of the targets and calibrators. After correcting the phases of the radio point sources in the AMiBA interferometric data, we recover 50%-70% flux loss due to phase errors. This allows us to restore more than 90% of a source flux. The method outlined in this work is not only applicable to the correction of deformation for other coplanar telescopes but also to single-dish telescopes with deformation problems. This work also forms the basis of the upcoming science results of AMiBA-13.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2014

SU-E-J-45: Design and Study of An In-House Respiratory Gating Phantom Platform for Gated Radiotherapy

Purpose: The main purpose of this work was to develop an in-house low cost respiratory motion phantom platform for testing the accuracy of the gated radiotherapy system and analyze the dosimetric difference during gated radiotherapy. Methods: An in-house respiratory motion platform(RMP) was designed and constructed for testing the targeting accuracy of respiratory tracking system. The RMP consist of acrylic Chest Wall Platform, 2 DC motors, 4 IR sensors, speed controller circuit, 2 LED and 2 moving rods inside the RMP. The velocity of the movement can be varied from 0 to 30 cycles per minute. The platform mounted to a base using precision linear bearings. The base and platform are made of clear, 15mm thick polycarbonate plastic and the linear ball bearings are oriented to restrict the platform to a movement of approximately 50mm up and down with very little friction. Results: The targeting accuracy of the respiratory tracking system was evaluated using phantom with and without respiratory movement with varied amplitude. We have found the 5% dose difference to the PTV during the movement in comparison with stable PTV. The RMP can perform sinusoidal motion in 1D with fixed peak to peak motion of 5 to 50mm and cycle interval from 2 to 6 seconds. The RMP was designed to be able to simulate the gross anatomical anterior posterior motion attributable to respiration-induced motion of the thoracic region. Conclusion: The unique RMP simulates breathing providing the means to create a comprehensive program for commissioning, training, quality assurance and dose verification of gated radiotherapy treatments. Create the anterior/posterior movement of a target over a 5 to 50 mm distance to replicate tumor movement. The targeting error of the respiratory tracking system is less than 1.0 mm which shows suitable for clinical treatment with highly performance.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2012

MicrobesFlux: a web platform for drafting metabolic models from the KEGG database

Concurrent with the efforts currently underway in mapping microbial genomes using high-throughput sequencing methods, systems biologists are building metabolic models to characterize and predict cell metabolisms. One of the key steps in building a metabolic model is using multiple databases to collect and assemble essential information about genome-annotations and the architecture of the metabolic network for a specific organism. To speed up metabolic model development for a large number of microorganisms, we need a user-friendly platform to construct metabolic networks and to perform constraint-based flux balance analysis based on genome databases and experimental results. We have developed a semi-automatic, web-based platform (MicrobesFlux) for generating and reconstructing metabolic models for annotated microorganisms. MicrobesFlux is able to automatically download the metabolic network (including enzymatic reactions and metabolites) of ~1,200 species from the KEGG database (Kyoto Encyclopedia of Genes and Genomes) and then convert it to a metabolic model draft. The platform also provides diverse customized tools, such as gene knockouts and the introduction of heterologous pathways, for users to reconstruct the model network. The reconstructed metabolic network can be formulated to a constraint-based flux model to predict and analyze the carbon fluxes in microbial metabolisms. The simulation results can be exported in the SBML format (The Systems Biology Markup Language). Furthermore, we also demonstrated the platform functionalities by developing an FBA model (including 229 reactions) for a recent annotated bioethanol producer, Thermoanaerobacter sp. strain X514, to predict its biomass growth and ethanol production. MicrobesFlux is an installation-free and open-source platform that enables biologists without prior programming knowledge to develop metabolic models for annotated microorganisms in the KEGG database. Our system facilitates users to reconstruct metabolic networks of organisms based on experimental information. Through human-computer interaction, MicrobesFlux provides users with reasonable predictions of microbial metabolism via flux balance analysis. This prototype platform can be a springboard for advanced and broad-scope modeling of complex biological systems by integrating other “omics” data or 13 C- metabolic flux analysis results.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2013

VOLTTRON Lite: Integration Platform for the Transactional Network

In FY13, Pacific Northwest National Laboratory (PNNL) with funding from the Department of Energy’s (DOE’s) Building Technologies Office (BTO) designed, prototyped and tested a transactional network platform. The platform is intended to support energy, operational and financial transactions between any networked entities (equipment, organizations, buildings, grid, etc.). Initially, in FY13, the concept demonstrated transactions between packaged rooftop units (RTUs) and the electric grid using applications or “agents” that reside on the platform, on the equipment, on local building controller or in the Cloud. This document describes the core of the transactional network platform, the Volttron Lite™ software and associated services hosted on the platform. Future enhancements are also discussed. The appendix of the document provides examples of how to use the various services hosted on the platform.

Haack, Jereme N.↗