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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 181 records · Page 10
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Differentiable Neural Architecture, Mixed Precision and Accelerator Co-Search

Quantization, effective Neural Network architecture, and efficient accelerator hardware are three important design paradigms to maximize accuracy and efficiency. Mixed Precision Quantization is a process of assigning different precision to different Neural Network layers for optimized inference. Neural Architecture Search (NAS) is a process of automatically designing the neural network for a task and can also be extended to search for the precision of each weight and activation matrix. In this paper, we develop the following three methods: (i) Fast Differentiable Hardware-aware Mixed Precision Quantization Search method to find optimal precision, (ii) Joint Differentiable hardware-aware Architecture and Mixed Precision Quantization Co-search, (iii) Joint Accelerator, Architecture, and Precision triple co-search to find best possibilities in all the three worlds. We demonstrate the effectiveness of our proposed methods targeting Bitfusion accelerator by searching mixed precision models on MobilenetV2. We achieve better accuracy-latency trade-off models than the manually designed and previously proposed search methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

CRISPR-CARB/nocap

Network Optimization and Causal Analysis of Perturb-seq (NOCAP) is a software package for causal inference of gene regulation networks using data from perturb-seq.

George, August↗
DOE OSTI2020

Structural conserved moiety splitting of a stoichiometric matrix

Characterising biochemical reaction network structure in mathematical terms enables the inference of functional biochemical consequences from network structure with existing mathematical techniques and spurs the development of new mathematics that exploits the peculiarities of biochemical network structure. The structure of a biochemical network may be specified by reaction stoichiometry, that is, the relative quantities of each molecule produced and consumed in each reaction of the network. A biochemical network may also be specified at a higher level of resolution in terms of the internal structure of each molecule and how molecular structures are transformed by each reaction in a network. The stoichiometry for a set of reactions can be compiled into a stoichiometric matrix N ϵ Z mxn where each row corresponds to a molecule and each column corresponds to a reaction. We demonstrate that a stoichiometric matrix may be split into the sum of m - rank(N) moiety transition matrices, each of which corresponds to a subnetwork accessible to a structurally identifiable conserved moiety. The existence of this moiety matrix splitting is a property that distinguishes a stoichiometric matrix from an arbitrary rectangular matrix.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Inferring Structural Parameters of Low-Surface-Brightness-Galaxies with Uncertainty Quantification using Bayesian Neural Networks

Measuring the structural parameters (size, total brightness, light concentration, etc.) of galaxies is a significant first step towards a quantitative description of different galaxy populations. In this work, we demonstrate that a Bayesian Neural Network (BNN) can be used for the inference, with uncertainty quantification, of such morphological parameters from simulated low-surface-brightness galaxy images. Compared to traditional profile-fitting methods, we show that the uncertainties obtained using BNNs are comparable in magnitude, well-calibrated, and the point estimates of the parameters are closer to the true values. Our method is also significantly faster, which is very important with the advent of the era of large galaxy surveys and big data in astrophysics.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
NASA NTRSDate not supplied

Consequences of Asteroid Characterization on the State of Knowledge about Inferred Physical Properties and Impact Risk

Physical characteristics of Near-Earth Objects (NEOs) are essential inputs to planetary defense assessments. The size, density, and strength of an NEO are critical inputs to modeling behavior during atmospheric entry as well as assessing the risk of impact. Similarly, knowledge of the physical characteristics of an object are necessary to evaluate the probable result of a mitigation mission. Usually, these attributes cannot be directly measured, but increasingly sophisticated methods have been developed to infer physical properties from related measurements of asteroids, meteors, and/or meteorites. Fortuitously, some of these measurements have been obtained for enough NEOs to elucidate the distribution of values across the sampled population. However, the situation becomes more challenging when considering a specific asteroid, since it is unlikely that all the relevant measurements have been made for any given object. We have developed a Bayesian network that can combine available information about a particular NEO with knowledge of the larger population to infer probabilistic values and uncertainties for physical characteristics of interest. Distributions of asteroid population albedos, taxonomic classes, and macroporosities, along with meteorite density distributions and associations between taxonomic classes and meteorite classes, provide the default distributions for the network’s parameter nodes. The inference network links parameters for each virtual asteroid either deterministically or probabilistically as appropriate, and eliminates any unphysical combinations of parameters. Within the context of planetary defense, our Bayesian network can be used to constrain the ranges of likely impactor properties, which can subsequently reduce the uncertainty in modelling of atmospheric entry, mitigation efficacy, and impact risk assessment. When additional measurements become available for a specific object, the network incorporates those measurements to generate virtual asteroids with property distributions that are consistent with the measurements. We will use the 2023 PDC scenario to demonstrate how the inference network can be combined with plausible characterization measurements to refine the state of knowledge about likely combinations of physical parameters and the resulting impact risk.

risk assessment↗
NASA NTRSDate not supplied

Consequences of Asteroid Characterization on the State of Knowledge about Inferred Physical Properties and Impact Risk

Physical characteristics of Near-Earth Objects (NEOs) are essential inputs to planetary defense assessments. The size, density, and strength of an NEO are critical inputs to modeling behavior during atmospheric entry as well as assessing the risk of impact. Similarly, knowledge of the physical characteristics of an object are necessary to evaluate the probable result of a mitigation mission. Usually, these attributes cannot be directly measured, but increasingly sophisticated methods have been developed to infer physical properties from related measurements of asteroids, meteors, and/or meteorites. Fortuitously, some of these measurements have been obtained for enough NEOs to elucidate the distribution of values across the sampled population. However, the situation becomes more challenging when considering a specific asteroid, since it is unlikely that all the relevant measurements have been made for any given object. We have developed a Bayesian network that can combine available information about a particular NEO with knowledge of the larger population to infer probabilistic values and uncertainties for physical characteristics of interest. Distributions of asteroid population albedos, taxonomic classes, and macroporosities, along with meteorite density distributions and associations between taxonomic classes and meteorite classes, provide the default distributions for the network’s parameter nodes. The inference network links parameters for each virtual asteroid either deterministically or probabilistically as appropriate, and eliminates any unphysical combinations of parameters. Within the context of planetary defense, our Bayesian network can be used to constrain the ranges of likely impactor properties, which can subsequently reduce the uncertainty in modelling of atmospheric entry, mitigation efficacy, and impact risk assessment. When additional measurements become available for a specific object, the network incorporates those measurements to generate virtual asteroids with property distributions that are consistent with the measurements. We will use the 2023 PDC scenario to demonstrate how the inference network can be combined with plausible characterization measurements to refine the state of knowledge about likely combinations of physical parameters and the resulting impact risk.

risk assessment↗
DOE OSTI2022

Differentially Private Synthesis and Sharing of Network Data Via Bayesian Exponential Random Graph Models

Abstract Network data often contain sensitive relational information. One approach to protecting sensitive information while offering flexibility for network analysis is to share synthesized networks based on the information in originally observed networks. We employ differential privacy (DP) and exponential random graph models (ERGMs) and propose the DP-ERGM method to synthesize network data. We apply DP-ERGM to two real-world networks. We then compare the utility of synthesized networks generated by DP-ERGM, the DyadWise Randomized Response (DWRR) approach, and the Synthesis through Conditional distribution of Edge given nodal Attribute (SCEA) approach. In general, the results suggest that DP-ERGM preserves the original information significantly better than two other approaches in network structural statistics and inference for ERGMs and latent space models. Furthermore, DP-ERGM satisfies node DP through modeling the global network structure with ERGM, a stronger notion of privacy than the edge DP under which DWRR and SCEA operate.

graph synthesis↗
NASA NTRS1991

Learning control of inverted pendulum system by neural network driven fuzzy reasoning: The learning function of NN-driven fuzzy reasoning under changes of reasoning environment

Whereas conventional fuzzy reasonings are associated with tuning problems, which are lack of membership functions and inference rule designs, a neural network driven fuzzy reasoning (NDF) capable of determining membership functions by neural network is formulated. In the antecedent parts of the neural network driven fuzzy reasoning, the optimum membership function is determined by a neural network, while in the consequent parts, an amount of control for each rule is determined by other plural neural networks. By introducing an algorithm of neural network driven fuzzy reasoning, inference rules for making a pendulum stand up from its lowest suspended point are determined for verifying the usefulness of the algorithm.

Hayashi, Isao↗
DOE OSTI2026

NN-OpInf

SAND2026-18878O The NN-OpInf tool is a PyTorch-based approach to operator inference that uses composable, structure-preserving neural networks to represent nonlinear operators. Operator inference is a machine learning method for inferring low-dimensional systems from data and polynomial models for system dynamics. However, many systems do not conform to polynomial structures, which NN-OpInf addresses by parameterizing operators with neural networks. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-NA0003525.

SciDAC↗
NASA NTRS1981

Comparisons of global ozone trends inferred from the BUV experiment on Nimbus 4 and the ground-based network

Preliminary comparisons between global ozone burdens derived from the backscattered ultraviolet (BUV) experiment on Nimbus 4 and those inferred from an analysis of ground-based network data seem to indicate significant differences in the inter-annual variability of ozone. Some of the observed differences may be due to improper weighting of the ground-based network data, slowly changing planetary wave structure over the fixed station, of small inter-annual changes in meridional transport parameters. There is also some evidence which indicates that the polar stratosphere at high latitudes may represent an important ozone storage resevoir which tends to compensate for large scale changes observed in the regions outside of the polar stratosphere. Possible consequences of this are that the global trends derived from ground based ozone measurements may not be valid and furthermore that the current satellite techniques by themselves may be sufficient. An ozone monitoring system which includes observations from satellites, ground-based stations, balloons and rockets may be necessary.

Heath, D. F.↗
DOE OSTI2023

Transcriptomic Network Analysis of Cyanobacterial-Methylotroph Interactions in Coculture and Axenic Conditions

A previous study demonstrated the potential for Cyanobacterial-Methylotroph cocultures to facilitate biogas processing as well as to be used in other biotechnological applications. To advance this technology, we investigated potential interactions between Cyanobacterium stanieri HL-69 (HL69) and Methylotuvimicrobium alkaliphilum 20Z (20Z) by inferring and analyzing gene co-expression networks under co-culture and axenic conditions. Five different co-expression networks were examined. These networks were inferred using gene expression profiles for 20Z axenic condition, HL-69 axenic, HL-69, 20Z coculture, HL-69 coculture, and cross-species HL-69-20Z coculture. Through the analysis of node (gene) betweenness and node normalized degree values in all five network cases, we compared adjustments in gene expression between growth conditions (axenic vs co-culture) as well as identify biological functions relevant to interspecies interactions. This analysis was done to distinguish between gene interactions within an organism and gene interactions between two organisms. Moreover, for all five cases we investigated two different network cutoff levels of 3,000 and 10,000. By shedding light on inter- and intra- species interactions, we hope to gain a better understanding of how these two organisms interact. This research will allow the investigation of further biotechnological applications of coculture systems and optimization of such applications for biotechnological purposes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Inference of neutrino flavor evolution through data assimilation and neural differential equations

The evolution of neutrino flavor in dense environments such as core-collapse supernovae and binary compact object mergers constitutes an important and unsolved problem. Its solution has potential implications for the dynamics and heavy-element nucleosynthesis in these environments. In this paper, we build upon recent work to explore inference-based techniques for the estimation of model parameters and neutrino flavor evolution histories. Here, we combine data assimilation, ordinary differential equation solvers, and neural networks to craft an inference approach tailored for nonlinear dynamical systems. Using this architecture, and a simple two-neutrino-beam, two-flavor model, we compare the performances of nine different optimization algorithms and expand upon previous assessments of the efficacy of inference for tackling problems in flavor evolution. We find that employing this new architecture, together with evolutionary optimization algorithms, accurately captures flavor histories in the small-scale model and allows us to quickly explore both model parameters and initial flavor content. In future work we plan to extend these inference techniques to large numbers of neutrinos.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
NASA NTRS2000

Qualitative Discovery in Medical Databases

Implication rules have been used in uncertainty reasoning systems to confirm and draw hypotheses or conclusions. However a major bottleneck in developing such systems lies in the elicitation of these rules. This paper empirically examines the performance of evidential inferencing with implication networks generated using a rule induction tool called KAT. KAT utilizes an algorithm for the statistical analysis of empirical case data, and hence reduces the knowledge engineering efforts and biases in subjective implication certainty assignment. The paper describes several experiments in which real-world diagnostic problems were investigated; namely, medical diagnostics. In particular, it attempts to show that: (1) with a limited number of case samples, KAT is capable of inducing implication networks useful for making evidential inferences based on partial observations, and (2) observation driven by a network entropy optimization mechanism is effective in reducing the uncertainty of predicted events.

Maluf, David A.↗
NASA NTRS1989

Morphological study of the innervation pattern of the rabbit sinoatrial node

The pattern of sinoatrial (SA) node innervations in rabbit was elucidated using a newly developed highly reproducible cholinesterase/silver impregnation staining procedure which made it possible to delineate large nerves, fine processes, and ganglion cells. The SA node and dominant pacemaker sites were identified by microelectrode recording. A generalized pattern of innnervation was recognized, which includes a large ganglionic complex inferior to the SA node; two or more moderately large nerves traversing the SA node parallel to the crista terminalis; nerves entering the intercaval region from the septum, the superior vena cava, and the inferior vena cava to impinge on the SA node; and a fine network of nerve processes, which was particularly dense in the SA node. From the location and distribution of the nerves and ganglionic branches, it can be inferred that the neural network in the intercaval region is capable of performing complex modulatory and integrative functions among the structures within this region.

Roberts, L. A.↗
NASA NTRS2003

Solar Coronal Heating and the Magnetic Flux Content of the Network

We investigate the heating of the quiet corona by measuring the increase of coronal luminosity with the amount of magnetic flux in the underlying network at solar minimum when there were no active regions on the face of the Sun. The coronal luminosity is measured from Fe IX/X-Fe XII pairs of coronal images from SOHO/EIT. The network magnetic flux content is measured from SOHO/MDI magnetograms. We find that the luminosity of the corona in our quiet regions increases roughly in proportion to the square root of the magnetic flux content of the network and roughly in proportion to the length of the perimeter of the network magnetic flux clumps. From (1) this result, (2) other observations of many fine-scale explosive events at the edges of network flux clumps, and (3) a demonstration that it is energetically feasible for the heating of the corona in quiet regions to be driven by explosions of granule-sized sheared-core magnetic bipoles embedded in the edges of network flux clumps, we infer that in quiet regions that are not influenced by active regions the corona is mainly heated by such magnetic activity in the edges of the network flux clumps. Our observational results together with our feasibility analysis allow us to predict that (1) at the edges of the network flux clumps there are many transient sheared-core bipoles of the size and lifetime of granules and having transverse field strengths greater than approximately - 100 G, (2) approximately 30 of these bipoles are present per supergranule, and (3) most spicules are produced by explosions of these bipoles.

Moore, R. L.↗
NASA NTRS2003

Solar Coronal Heating and the Magnetic Flux Content of the Network

We investigate the heating of the quiet corona by measuring the increase of coronal luminosity with the amount of magnetic flux in the underlying network at solar minimum when there were no active regions on the face of the Sun. The coronal luminosity is measured from Fe IX/X-Fe XII pairs of coronal images from SOHO/EIT. The network magnetic flux content is measured from SOHO/MDI magnetograms. We find that the luminosity of the corona in our quiet regions increases roughly in proportion to the square root of the magnetic flux content of the network and roughly in proportion to the length of the perimeter of the network magnetic flux clumps. From (1) this result, (2) other observations of many fine-scale explosive events at the edges of network flux clumps, and (3) a demonstration that it is energetically feasible for the heating of the corona in quiet regions to be driven by explosions of granule-sized sheared-core magnetic bipoles embedded in the edges of network flux clumps, we infer that in quiet regions that are not influenced by active regions the corona is mainly heated by such magnetic activity in the edges of the network flux clumps. Our observational results together with our feasibility analysis allow us to predict that (1) at the edges of the network flux clumps there are many transient sheared-core bipoles of the size and lifetime of granules and having transverse field strengths > approx. 100 G, (2) approx. 30 of these bipoles are present per supergranule, and (3) most spicules are produced by explosions of these bipoles.

Falconer, D. A.↗
DOE OSTI2023

Joint Detection and Communication over Type-Sensitive Networks

Due to the difficulty of decentralized inference with conditional dependent observations, and motivated by large-scale heterogeneous networks, we formulate a framework for decentralized detection with coupled observations. Each agent has a state, and the empirical distribution of all agents’ states or the type of network dictates the individual agents’ behavior. In particular, agents’ observations depend on both the underlying hypothesis as well as the empirical distribution of the agents’ states. Hence, our framework captures a high degree of coupling, in that an individual agent’s behavior depends on both the underlying hypothesis and the behavior of all other agents in the network. Considering this framework, the method of types, and a series of equicontinuity arguments, we derive the error exponent for the case in which all agents are identical and show that this error exponent depends on only a single empirical distribution. The analysis is extended to the multi-class case, and numerical results with state-dependent agent signaling and state-dependent channels highlight the utility of the proposed framework for analysis of highly coupled environments.

42 ENGINEERING↗
DOE OSTI2024

Current and future directions in network biology

Network biology is an interdisciplinary field bridging computational and biological sciences that has proved pivotal in advancing the understanding of cellular functions and diseases across biological systems and scales. Although the field has been around for two decades, it remains nascent. It has witnessed rapid evolution, accompanied by emerging challenges. These stem from various factors, notably the growing complexity and volume of data together with the increased diversity of data types describing different tiers of biological organization. We discuss prevailing research directions in network biology, focusing on molecular/cellular networks but also on other biological network types such as biomedical knowledge graphs, patient similarity networks, brain networks, and social/contact networks relevant to disease spread. In more detail, we highlight areas of inference and comparison of biological networks, multimodal data integration and heterogeneous networks, higher-order network analysis, machine learning on networks, and network-based personalized medicine. Following the overview of recent breakthroughs across these five areas, we offer a perspective on future directions of network biology. Additionally, we discuss scientific communities, educational initiatives, and the importance of fostering diversity within the field. This article establishes a roadmap for an immediate and long-term vision for network biology.

59 BASIC BIOLOGICAL SCIENCES↗