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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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On behalf of our WFO sponsors/collaborators, we are working closely with NVIDIA to improve their public, open-source GPU dataframes library. We are improving the library's support for reading and writing Parquet (an open source file format) for general-purpose cloud storage and processing. This patch better supports the indexing found in the more recent Parquet specifications. Is there
Hardware library implementation of the open source ZFP CODEC. ZHP provides a sub-set of the ZFP library compression and decompression functionality, but in the SystemC language rather than the C/C++ and Fortran languages used in the ZFP implementation.
SF-22-157 NEML2 is an extension of an earlier open source code developed at ANL (SF-xxxx) called NEML. These libraries provide tools for constructing and using models of engineering materials, with a focus on high temperature materials for nuclear reactor applications. The software include tools for setting up material models, calibrating models, storing models for later use in other simulations, and running simple "material point" simulations of the material behavior. The main difference between NEML and NEML2 is the new software has been complete restructured to run on GPUs and other accelerators in order to improve the performance of methods used to train constitutive models against data and to improve the performance of the final models in production environments, like finite element software. While over time we expect NEML2 to become more-or-less feature complete with NEML we are filing a new software disclosure because (1) the library has been complete restructured and (2) we want to host NEML2 in a separate repository.
SAND2024-01234O TICC is a clustering algorithm that labels a sequence of data points according to numerical properties. This library is a Python implementation of the algorithm described in "Toeplitz Inverse Covariance-Based Clustering of Multivariate Time Series Data" (Hallac et al. 2017). It includes documentation, performance improvements, examples, and test coverage. This library allows users to automatically segment a series of multivariate data points according to their covariance—that is, the way the values at each data point are changing in relation to one another. This is useful for identifying periods in which a system is behaving. For example, if a sensor is measuring a car's velocity, steering wheel angle, braking and acceleration, TICC can determine when the car was stopped, beginning/exiting a turn, slowing or accelerating at an intersection, or driving on straight or curved roads. TICC can be applied to measure multiple quantities at known times. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525
Axolotl is a Python library for scalable distributed genome and metagenome data analysis. Existing tools and systems that we rely on are struggling to keep up with the rapid explosion of genomic data. Compounding this issue, developing scalable solutions require a steep learning curve in parallel programming, which presents a barrier to academic researchers. While we do have scalable solutions for specific tasks, we lack comprehensive, end-to-end solutions. It's this gap in our toolkit that we aim to address with Axolotl. The Axolotl library is built for easy parallel processing, efficiently handling multiple tasks or large datasets simultaneously, and scaling up to meet the demands of extensive genomic data analysis.
This software is a pipeline used to identify the distribution of user-specified sequences in oligo pools that have been sequenced on the MiSeq platform for quality control purposes. The software counts instances of user-specified sequences (inserts or spacers) identified in sequencing data, returning the distribution of sequences in each pool and the length distribution of all the sequences. Among other types similar types of projects, this can be used to assess the quality of a guideRNA library once it has been inserted into the vector of choice to ensure that there is an even distribution of all the individual protospacers in the pool. This pipeline uses many freely available open source libraries, the value added is that in our application the steps of the pipeline are defined in Workflow Description Language (WDL) and run through the Cromwell workflow engine in Docker containers, for easy distribution and set up.
This software library serves as a Python wrapper for Geotab's Altitude API. It streamlines querying of the API, converts loosely structured API outputs into a standardized tabular data format, and enables analysis of the resulting data tables. It also includes example notebooks showing how to use the library.
FuelLib is a library that utilizes the group contribution method (GCM) for calculating thermodynamic properties of hydro-carbon jet fuels. FuelLib utilizes the tables and functions of the GCM as proposed by Constantinou and Gani (1994) and Constantinou, Gani and O'Connel (1995), with additional physical properties discussed in Govindaraju & Ihme (2016). The code is based on Pavan B. Govindaraju's Matlab implementation of the GCM, and has been expanded to include additional thermodynamic properties and mixture properties. The fuel library contains gas chromatography (GC x GC) data for a variety of fuels ranging from simple single component fuels to complex jet fuels. The GC x GC data for POSF jet fuels comes from Edwards (2020).
GRETL is a C++ library for evaluation, re-evaluation and algorithmic differentiation of functional operations on an arbitrary computational graph with limited memory usage. Similar to popular machine learning frameworks in Python, like PyTorch and JAX, it tracks and stores both operations and output data as functions are evaluated. Once this composition of functions is built up, the entire chain of operations can be back propagated to compute sensitivities of the final result with respect to any number of inputs. In contrast to most machine learning applications, memory usage becomes the bottleneck for back propagation in many physics applications, especially for time-dependent PDEs. Dynamic check pointing becomes essential. An important distinguishing feature of GRETL is its ability to limit the maximum memory usage by automatically dynamic checkpointing the data output for each graph operation (see Wang, Moin, Iaccarino, 2009). During backpropagation, parts of the graph that are no longer in memory are automatically re-evaluated from upstream checkpointed states as needed for derivative sensitivity calculations (or more precisely, for vector-Jacobian products). GRETL is particularly beneficial for applications, such as coupled multi-physics, where deriving adjoint-based sensitivities and managing checkpoint memory across modules becomes onerous. Cases which can be readily handled by the GRETL library include: different time-integration algorithms per physics (e.g., coupled predictor-corrector algorithms, IMEX, etc.), sub-cycling, asynchronous integrators, state dependent timestep sizes, iterative solvers and coupling algorithms, controller algorithms, and more.
The Open MPI for Exascale (OMPI-X) project was one of two in the Exascale Computing Project (ECP) focused on advancing the MPI ecosystem. The OMPI-X team worked with other MPI Forum members to champion several important features for inclusion in the MPI 4.0, 4.1, and upcoming 5.0 MPI standard versions, in support of the needs of exascale applications and systems. The team also worked with the larger Open MPI community to bring implementations of these new features and other enhancements into Open MPI, one of the leading open-source implementations of the MPI interface. Here, this paper describes the motivation for the work of the OMPI-X project in the context of exascale computing needs, the nature of the resulting new capabilities in the MPI standard, and how they were implemented in the Open MPI library. Features include improved support for “MPI + X” programming models through partitioned communications and support for user-level threading, sessions, fault tolerance through the user-level fault mitigation (ULFM) and Reinit models, and other features. We also discuss enhancements to Open MPI providing improved performance and scalability for existing features, such as collective operations, one-sided operations, support for the Slingshot-11 interconnect of the initial exascale systems, and how the OMPI-X team worked to improve quality assurance for the Open MPI library, particularly on platforms of interest to the Department of Energy community.
SLATE (Software for Linear Algebra Targeting Exascale) is a distributed, dense linear algebra library targeting both CPU-only and GPU-accelerated systems, developed over the course of the Exascale Computing Project (ECP). While it began with several documents setting out its initial design, significant design changes occurred throughout its development. In some cases, these were anticipated: an early version used a simple consistency flag that was later replaced with a full-featured consistency protocol. In other cases, performance limitations and software and hardware changes prompted a redesign. Sequential communication tasks were parallelized; host-to-host MPI calls were replaced with GPU device-to-device MPI calls; more advanced algorithms such as Communication Avoiding LU and the Random Butterfly Transform (RBT) were introduced. Early choices that turned out to be cumbersome, error prone, or inflexible have been replaced with simpler, more intuitive, or more flexible designs. Applications have been a driving force, prompting a lighter weight queue class, nonuniform tile sizes, and more flexible MPI process grids. Of paramount importance has been building a portable library that works across several different GPU architectures – AMD, Intel, and NVIDIA – while keeping a clean and maintainable codebase. Here we explore the evolving design choices and their effects, both in terms of performance and software sustainability.
This is the documentation for the tensor library QSpace (v4.0), a toolbox to exploit ‘quan tum symmetry spaces’ in tensor network states in the quantum many-body context. QSpace permits arbitrary combinations of symmetries including the abelian symmetries $\mathbb{Z}_n$ and U(1), as well as all non-abelian symmetries based on the semisimple classical Lie algebras: A n , B n , C n , and D n , or respectively, the special unitary group SU(n), the odd orthogonal group SO(2n+1), the symplectic group Sp(2n), and the even orthogonal group SO(2n). The code (C++ embedded via the MEX interface into Matlab) is available open source as of QSpace v4.0 on bitbucket under the Apache 2.0 license. QSpace is designed as a bottom-up approach for non-abelian symmetries. It starts from the defining representation and the respective Lie algebra. By explicitly comput ing and tabulating generalized Clebsch-Gordan coefficient tensors, QSpace is versatile in the type of operations that it can perform across all symmetries. At the level of an ap plication, much of the symmetry-related details are hidden within the QSpace C++ core libraries. Hence when developing tensor network algorithms with QSpace, these can be coded (nearly) as if there are no symmetries at all, despite being able to fully exploit general non-abelian symmetries.
This work details the development of a concentrating solar power (CSP) and thermal (CST) library archive. This work included digitization of one-of-a-kind documents that could be degraded or destroyed over time. Sandia National Laboratories (SNL) National Solar Thermal Test Facility (NSTTF) and Sandia's Technical Library departments collaborated to establish and maintain the first and only digital collection in the world of Concentrating Solar Power (CSP) related historical documents. These date back to the CSP program inception here at Sandia in the early 1970's thru to the present.
As part of the verification and validation (V&V) efforts of the Argonne Reactor Code (ARC) software system to support the Versatile Test Reactor (VTR) project of the U.S. Department of Energy (DOE), work has been performed to verify and validate the gamma (or photon) library of the multigroup cross section generation code MC 2 -3 of the ARC system, which is the essential part of the coupled neutron and gamma heating calculations to determine the heat generation rate or power distribution in the core. This V&V study was carried out in three steps: 1) review of the procedures and utility programs for generating the MC 2 -3 gamma library, 2) verification tests of cross sections and KERMA factors by comparing the total heat generation rate of coupled neutron and gamma calculation with that obtained with reaction Q values under the assumption of local gamma energy deposition and by comparing the prompt heat generation rate with that calculated with the MCNP6.2 code, and 3) validation tests of cross sections and KERMA factors by analyzing the ZPPR-15D gamma dose data measured with thermoluminescent dosimeters (TLD).
This presentation begins by defining observables, including theoretical observable, calculable observable, and measured observable. It also provides definitions and examples of experimental effects. Additionally, uncertainty in evaluated libraries and a metric to probe evaluated uncertainty is presented. In conclusion, being related to theoretical quantities such as resonance parameters, the uncertainty in ENDF libraries (e.g., ENDF/B-VIII.0) can be overestimated because it is usually evaluated under the guidance of experimental uncertainty: lim Δσexp.corr.→0 Δσ = Δσ theoretical model . The presentation states that a clear distinction of the uncertainty between nuclear theoretical models and experimental corrections should be revisited and this is important since (e.g., transport) simulations need theoretical quantities convoluted with specific operational parameters and material configurations. It also states that strong coupling between uncertainty quantification methodologies and optimization procedures exists, and it is necessary to develop methodologies to obtain uncertainty on theoretical models from physical and mathematical constraints.
This presentation touches on AMPX and SCALE nuclear data libraries for depletion. AMPX is a nuclear data processing code suite that generates continuous-energy and multigroup neutron and gamma libraries used in SCALE and VERA, covariance data used in S/U calculations, and depletion, activation and decay origin data for Oak Ridge Isotope Generation code (ORIGEN).
This presentation provides an enlightening discussion of AMPX and ENDF/B-VIII.1. The talk begins with general ENDF issues encountered. Then narrows down into Issues particular to thermal scattering library. Such as the need for clear communication of the intended use for the file and the question of “Which graphite should I use in model?”. The presentation then looks at TSL files with many Bragg peaks are driving a change in SCALE CE library format and transport codes. This lecture concludes with a look at usage of thermal kernels with sharp peaks with the issues encountered using ENDF/B-VIII.0 data and resolved.
LLNL’s Nuclear Data and Theory Group has created the 2011.5 revised release of the Evaluated Nuclear Data Library (ENDL2011.5). ENDL2011.5 is designed to support LLNL’s current and future nuclear data needs and will be employed in nuclear reactor, nuclear security and stockpile stewardship simulations with ASC codes. This database is currently the most complete nuclear database for Monte Carlo and deterministic transport of neutrons and charged particles. This library was assembled with strong support from the ASC PEM and Attribution programs, leveraged with support from Campaign 4 and the DOE/Office of Science’s US Nuclear Data Program. This document lists the revisions made in ENDL2011.5 compared with the data existing in the original ENDL2011.2 and ENDL2011.3 releases. These changes are made in parallel with some similar revisions for ENDL2009.5. We also describe ENDL2011.5-direct that directly uses ENDF sources wherever possible.