Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Jupyter”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 181 records · Page 10

The Analysis Description Language Ecosystem: Latest developments and physics applications

We present latest developments in Analysis Description Language (ADL), a declarative domain-specific language describing the physics algorithm of a HEP data analysis decoupled from software frameworks. Analyses written in ADL can be integrated into any framework for various tasks. ADL is a multipurpose construct with uses ranging from analysis design to preservation, reinterpretation, queries, visualisation, combination, etc. The most advanced infrastructure to execute ADL on events is the CutLang runtime interpreter. Recent technical developments include an automated interface with different data types, generation of the abstract syntax tree, a visualization tool that that auto-converts analysis flows to graphs, incorporation of trained machine learning models and a Jupyter-based plotting tool. We also report physics implications including a large scale LHC analysis implementation and validation effort for beyond the standard model reinterpretation purposes and studies with ATLAS and CMS open data.

Sekmen, Sezen [Kyungpook National Univ., Daegu (Ko↗

Dataset_for_Conserved_macromolecular_architecture_of_Poplar_secondary_cell_walls_revealed_by_ssNMR_and_atomistic_modeling

This dataset contains solid-state 13C NMR data and atomistic molecular dynamics simulation files supporting the study of nanoscale secondary cell wall architecture across 13 genetically diverse Populus trichocarpa genotypes grown under uniform greenhouse conditions in 13C-enriched CO2 atmospheres (~89% 13C enrichment).The dataset contains two collections of solid-state 13C NMR data. (1) 200 MHz data (Bruker Avance III HD, 4 mm HX probe, 10 kHz MAS): raw Bruker TopSpin experiment folders and DMFIT-exported ascii spectra for selective and non-selective 1D 13C-13C spin diffusion experiments (3000 ms mixing) used to quantify inter-polymer spatial proximities, and short-mixing (1 ms) reference spectra used for polymeric abundance quantification by spectral deconvolution. (2) 600 MHz data (Bruker Avance III, 1.6 mm PhoenixNMR HXY probe, 30 kHz MAS): raw Bruker TopSpin experiment folders containing 2D CORD, 2D CP-INADEQUATE, and 13C/1H relaxation (T1, T1rho) experiments for all 13 genotypes, with processed Excel workbooks per experiment type. Molecular dynamics simulation code, coordinate files, and analysis scripts (NAMD/CHARMM/Python) for six atomistic cell wall models are included. Summarized ssNMR data are compiled into a single excel file and subjected to statistical analysis. Multivariate analysis code (PCA, Pearson correlation) and summary data are provided as excel worksheets and Jupyter notebooks (Python 3).

09 BIOMASS FUELS↗

United States Utility-Scale PV Supply Curves 2023

This data packet contains supply curves, hourly generation profiles, and a composite siting exclusion TIFF for utility-scale PV across the contiguous United States. The supply curves offer comprehensive metrics such as capacity (MW), generation (MWh), levelized cost of energy (LCOE), levelized cost of transmission (LCOT), and more for each reV site (~60,000 sites). Hourly generation profiles are available for each reV site and can be matched to the available capacity in the supply curve (refer to the Jupyter Notebook). The composite exclusion TIFF is a single file that delineates areas where PV installations are permissible based on various siting assumptions. This data packet contains information for the Reference and Limited siting scenarios. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

2023↗

United States Land-based Wind Supply Curves 2023

This data packet contains supply curves, hourly generation profiles, and a composite siting exclusion TIFF for land-based wind across the contiguous United States. The supply curves offer comprehensive metrics such as capacity (MW), generation (MWh), levelized cost of energy (LCOE), levelized cost of transmission (LCOT), and more for each reV site (~60,000 sites). Hourly generation profiles are available for each reV site and can be matched to the available capacity in the supply curve (refer to the Jupyter Notebook). The composite exclusion TIFF is a single file that delineates areas where wind installations are permissible based on various siting assumptions. This data packet contains information for the Reference and Limited siting scenarios. The turbine parameters used were a hub-height of 115 meters and a rotor diameter of 170 meters, as obtained from the Annual Technology Baseline (ATB) 2022. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

2023↗

MESA-Web: A cloud resource for stellar evolution in astronomy curriculum

Here, we present MESA-Web,a cloud resource with an online interface to the Modules for Experiments in Stellar Astrophysics (MESA) software instrument. MESA-Web allows learners to evolve stellar models without the need to download and install MESA. Since being released in 2015, MESA-Web has delivered over 17,000 calculations to over 2,200 unique learners and currently performs about 11 jobs per day. MESA-Web can be used as an educational tool for stars in the classroom or for scientific investigations. We report on new capabilities of MESA-Web introduced since its 2015 release including learner-supplied nuclear reaction rates, custom stopping conditions, and an expanded selection of input parameters. To foster collaboration we have created a Zenodo MESA-Web community hub, where instructors can openly share examples of using MESA-Web in the classroom. We discuss two examples in the current community hub. The first example is a lesson module on Red Giant Branch stars that includes a suite of exercises designed to fit a range of learners and a Jupyter workbook for additional analysis. The second example is lesson materials for an upper-level Astronomy majors course in Stars and Radiation that includes an assignment verifying some of the expected trends that are presented in a popular stellar physics textbook.

79 ASTRONOMY AND ASTROPHYSICS↗

The Atacama Cosmology Telescope: Summary of DR4 and DR5 Data Products and Data Access

Two recent large data releases for the Atacama Cosmology Telescope (ACT), called DR4 and DR5, are available for public access. These data include temperature and polarization maps that cover nearly half the sky at arcminute resolution in three frequency bands; lensing maps and component-separated maps covering ~ 2,100 deg 2 of sky; derived power spectra and cosmological likelihoods; a catalog of over 4,000 galaxy clusters; and supporting ancillary products including beam functions and masks. The data and products are described in a suite of ACT papers; here we provide a summary. In order to facilitate ease of access to these data we present a set of Jupyter IPython notebooks developed to introduce users to DR4, DR5, and the tools needed to analyze these data. The data products (excluding simulations) and the set of notebooks are publicly available on the NASA Legacy Archive for Microwave Background Data Analysis (LAMBDA); simulation products are available on the National Energy Research Scientific Computing Center (NERSC).

79 ASTRONOMY AND ASTROPHYSICS↗

The Dark Energy Survey Data Release 2

In this work, we present the second public data release of the Dark Energy Survey, DES DR2, based on optical/near-infrared imaging by the Dark Energy Camera mounted on the 4 m Blanco telescope at Cerro Tololo Inter-American Observatory in Chile. DES DR2 consists of reduced single-epoch and coadded images, a source catalog derived from coadded images, and associated data products assembled from 6 yr of DES science operations. This release includes data from the DES wide-area survey covering ~5000 deg 2 of the southern Galactic cap in five broad photometric bands, grizY. DES DR2 has a median delivered point-spread function FWHM of g = 1.11'', r = 0.95'', i = 0.88'', z = 0.83'', and Y = 0farcs90, photometric uniformity with a standard deviation of < 3 mmag with respect to Gaia DR2 G band, a photometric accuracy of ~11 mmag, and a median internal astrometric precision of ~27 mas. The median coadded catalog depth for a 1farcs95 diameter aperture at signal-to-noise ratio = 10 is g = 24.7, r = 24.4, i = 23.8, z = 23.1, and Y = 21.7 mag. DES DR2 includes ~691 million distinct astronomical objects detected in 10,169 coadded image tiles of size 0.534 deg2 produced from 76,217 single-epoch images. After a basic quality selection, benchmark galaxy and stellar samples contain 543 million and 145 million objects, respectively. These data are accessible through several interfaces, including interactive image visualization tools, web-based query clients, image cutout servers, and Jupyter notebooks. DES DR2 constitutes the largest photometric data set to date at the achieved depth and photometric precision.

79 ASTRONOMY AND ASTROPHYSICS↗

UCB-GLOBES: An open-access mass spectral database of identified and unidentified atmospheric organic compounds

Chemical characterization of atmospheric organic aerosols using gas chromatography with 70 eV electron ionization mass spectrometry (GC/EI-MS) has been used for decades in advancing molecular marker detection and identification, though primarily through suspect screening and/or targeted analyses. To advance non-targeted analyses of environmental samples, we have catalogued approximately 27 000 mass spectra (MS) of the trimethylsilyl derivatives of semi-volatile organic aerosol (OA) analytes in the open-access University of California Berkeley Goldstein Library of Organic Biogenic Environmental Spectra (UCB-GLOBES). Analytes were observed in ambient samples from the U.S. and the Central Amazon and/or laboratory simulations of secondary OA (SOA) formation. These samples are representative of OA under urban and biomass burning influences as well as SOA derived from biogenic precursors (e.g., isoprene, monoterpenes, sesquiterpenes) and biomass burning intermediates. MS are documented in UCB-GLOBES without regard to known chemical identity, annotated with extensive metadata such as sample source/experimental conditions, any structural information gained from MS analyses, and predicted chemical properties such as average carbon oxidation state and carbon number. UCB-GLOBES MS are compatible for importing into the NIST MS Search program, and we have also provided a Jupyter Notebook for MS visualization and comparisons. We demonstrate the utility of UCB-GLOBES through MS reanalyses of prior analytes observed in ambient data, finding a 20 % reduction in the number of analytes assigned to OA source categories reliant solely on time series correlation and an overall 11 % increase in new MS-based OA source categorization for the Southeast U.S. For 1513 analytes observed previously in the Central Amazon, we found 375 MS matches using UCB-GLOBES vs. 136 MS matches during prior analyses, representing a 14 % gain in newly confirmed or newly categorized OA species. While OA from laboratory oxidation experiments in UCB-GLOBES are highly diverse chemically, on average only 29 % of UCB-GLOBES MS have a mass spectral match to another MS entry in UCB-GLOBES and/or in databases of known compounds (i.e. NIST MS Database, Adams Essential Oil, MANE Flavor and Fragrance Company). This indicates that roughly 70 % of UCB-GLOBES MS are unique thus far, not observed more than once among the laboratory oxidation samples and ambient data in UCB-GLOBES MS. Further, only 18 % can be positively identified using these databases or known authentic standards. This points to a large gap between these laboratory simulations and ambient OA. Overall, the UCB-GLOBES database can be utilized for improving confidence in OA source categorization and/or identification, novel chemical marker discovery, tracking chemical diversity, de novo structure and properties prediction, and improving MS search and matching algorithms. This can ultimately inform future research priorities for the chemical characterization of atmospheric organic samples.

Mass spectrometry↗

Integrating CVMix into GOTM (v6.0): a consistent framework for testing, comparing, and applying ocean mixing schemes

Abstract. The General Ocean Turbulence Model (GOTM) is a one-dimensional water column model, including a set of state-of-the-art turbulence closure models, and has widely been used in various applications in the ocean modeling community. Here, we extend GOTM to include a set of newly developed ocean surface vertical mixing parameterizations of Langmuir turbulence via coupling with the Community Vertical Mixing Project (CVMix). A Stokes drift module is also implemented in GOTM to provide the necessary ocean surface waves information to the Langmuir turbulence parameterizations, as well as to facilitate future development and evaluation of new Langmuir turbulence parameterizations. In addition, a streamlined workflow with Python and Jupyter notebooks is also described, enabled by the newly developed and more flexible configuration capability of GOTM. The newly implemented Langmuir turbulence parameterizations are evaluated against theoretical scalings and available observations in four test cases, including an idealized wind-driven entrainment case and three realistic cases at Ocean Station Papa, the northern North Sea, and the central Baltic Sea, and compared with the existing general length scale scheme in GOTM. The results are consistent with previous studies. This development extends the capability of GOTM towards including the effects of ocean surface waves and provides useful toolsets for the ocean modeling community to further study the effects of Langmuir turbulence in a broader scope.

58 GEOSCIENCES↗

Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling

Abstract. Organic matter (OM) composition plays a central role in microbial respiration of dissolved organic matter and subsequent biogeochemical reactions. Here, a direct connection of organic matter chemistry and thermodynamics to reactive transport simulators has been achieved through the newly developed Lambda-PFLOTRAN workflow tool that succinctly incorporates carbon chemistry data generated from Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) into reaction networks to simulate organic matter degradation and the resulting biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow, executed through a Jupyter notebook interface, that digests raw FTICR-MS data, develops a representative reaction network based on substrate-explicit thermodynamic modeling (also termed lambda modeling due to its key thermodynamic parameter λ used therein), and completes a biogeochemical simulation with the open source, reactive flow and transport code PFLOTRAN. The workflow consists of the following five steps: configuration, thermodynamic (lambda) analysis, sensitivity analysis, parameter estimation, and simulation output and visualization. Two test cases are provided to demonstrate the functionality of the Lambda-PFLOTRAN workflow. The first test case uses laboratory incubation data of temporal oxygen depletion to fit lambda parameters (i.e., maximum utilization rate and microbial carrying capacity). A slightly more complex second test case fits multiple lambda formulation and soil organic matter release parameters to temporal greenhouse gas generation measured during a soil incubation. Overall, the Lambda-PFLOTRAN workflow facilitates upscaling by using molecular-scale characterization to inform biogeochemical processes occurring at larger scales.

58 GEOSCIENCES↗

Data and Code for: Observation-constrained agroecosystem model inversion reveals continental-scale variation of winter wheat traits

This repository contains the simulation outputs and processing scripts associated with the study of winter wheat traits across the United States, utilizing the Ecosys agroecosystem model. The dataset includes model results for both rainfed and irrigated winter wheat systems, supporting the findings presented in the manuscript titled "Observation-constrained agroecosystem model inversion reveals continental-scale variation of winter wheat traits." Data includes the original Ecosys simulation outputs (archived in .db format within the compressed .zip files) and extracted analysis data (stored in .pkl files for efficient processing). Python code for data processing and figure generation is provided in a Jupyter notebook. External Observational Datasets should refer to the following official repositories for the input and validation data used in this study. The eddy covariance data from the AmeriFlux network (https://ameriflux.lbl.gov/). Climate-forcing data of NLDAS-2 from NASA LDAS (https://ldas.gsfc.nasa.gov/nldas/nldas-2-forcing-data). Soil data from the Gridded Soil Survey Geographic Database (gSSURGO), available at (https://www.nrcs.usda.gov/resources/data-and-reports/gridded-soil-survey-geographic-gssurgo-database). Crop yields, planting and harvest dates from the USDA public databases (https://quickstats.nass.usda.gov/; https://webapp.rma.usda.gov/apps/actuarialinformationbrowser/CropCriteria.aspx). Satellite-derived SLOPE GPP data from ORNL DAAC (https://daac.ornl.gov/cgi-bin/dsviewer.pl?ds_id=1786). Land use and crop progress information from the USDA Crop Data Layer and Crop Progress and Condition Gridded Layers (https://www.nass.usda.gov/Research_and_Science/). The Ecosys model code is available online at https://github.com/jinyun1tang/ECOSYS.

Wheat↗

Place polarized neutron reflectivity data in bins of constant wavevector transfer

Code to place polarized neutron reflectivity into bins of constant Qz with regard for Zeeman energy change to the spin-flip channel. The code is written as a Jupyter notebook. Example data are included as separate files (spin_down.txt and spin_up.txt). As a first step, run all cells in the notebook. Opportunities are identified for users to make their own choices for analysis of the data. The code is written to be a stand-alone operation on data collected from a pulse neutron source that have been previously normalized to the wavelength dependence of the incident beam spectrum, background subtracted, etc. The constant Qz binning (this code) is the last step to perform in the analysis (reduction) workflow. This step yields the the reflectivities for the four neutron spin cross-sections. A future intention is to create a version of this code that will be one module of many in the data analysis workflow.

Fitzsimmons, Michael [Oak Ridge National Lab. (ORN↗

Code to map Xray reflectivity data from real space to reciprocal space

Code to map X-ray reflectivity data from real space to reciprocal space. The code is written as a Jupyter notebook. Example data are included as a separate file (example_data.csv). These data were collected on a Panalytical XRD system. As a first step, run all cells in the notebook. Opportunities are identified for users to make their own choices for choosing the boundaries of the region of interest to estimate background. A simple algorithm is used to estimate background from the outer regions of the data collection region, interpolating the result inside the region of interest. The background is removed and then the data mapped to Qx-Qz (reciprocal space) coordinates. The results are written as NumPy binary and Matlab formatted files.

Fitzsimmons, Michael [Oak Ridge National Lab. (ORN↗

A neural network for cloud masking in WorldView satellite imagery

This repository includes the cloud detection algorithm used in the manuscript 'Topography controls variability in circumpolar permafrost thaw pond expansion' by Abolt et al. It also includes a demonstration of the algorithm's use at a survey area in northern Alaska and a demonstration of training the algorithm. This dataset includes .pt place-text, .py python, .tif image, .ipynb Jupyter notebook, and .txt text files.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic) was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Repository of HydroSMADE: Hydropower Site-level Monthly Availability Data Ensemble for 1950-2100 at Existing and Potential Global Sites

This repository presents HydroSMADE—Hydropower Site-level Monthly Availability Data Ensemble, a new open dataset that provides monthly hydropower availability for 1,593 existing and 124,333 potential sites worldwide over the period 1950–2100. The dataset is generated by using a global hydrologic model (Xanthos) with explicit representation of hydropower operation. Specifically, HydroSMADE distinguishes between storage and diversion sites, applies optimized operating rules, and incorporates site-specific characteristics such as generation capacity, maximum turbine flow, and reservoir storage. Driven by bias-corrected meteorological inputs, the data is provided for 30 alternative future scenarios. The scenarios consist of the full factorial combination of three standard CMIP6 atmospheric forcing pathways (SSP1-2.6, SSP3-7.0, and SSP5-8.5) and ten CMIP6 General Circulation Models (GCMs): GFDL-ESM4, IPSL-CM6A-LR, MPI-ESM1-2-HR, MRI-ESM2-0, EC-Earth3, CanESM5, MIROC6, CNRM-ESM2-1, UKESM1-0-LL, and CNRM-CM6-1. The repository contains a total of 122 files: a text file (readme.txt) containing a brief description of the included data, a CSV file containing site attributes, and the remaining 120 files (in CSV) containing site-level monthly hydropower availability. Example Jupyter Notebooks to explore the HydroSMADE dataset are available on GitHub at https://github.com/kamal0013/HydroSMADE More details on the methods and technical validation of HydroSMADE are available in the following paper by the same authors: Chowdhury, A. K., Abeshu, G. W., Zhao, M., Wild, T. B., Hassan, N., Ying, Z., Kim, G. J., Matthew, B., Jonathan, L., & Li, H.-Y. (Submitted). Hydropower Site-level Monthly Availability Data Ensemble for 1950-2100 at Existing and Potential Global Sites.

Existing and Potential Sites↗

MSD CoP Webinar: "Advances in MSD-LIVE to Support the MSD Community of Practice"

Context: This webinar was hosted by the MultiSector Dynamics Community of Practice (MSD CoP; https://multisectordynamics.org). Advances in MSD-LIVE to Support the MSD Community of Practice Presenters: Casey Burleyson and Zoe Guillen (Pacific Northwest National Laboratory) Abstract: The MultiSector Dynamics Living, Intuitive, Value-adding, Environment (MSD-LIVE; msdlive.org) is a cloud-based data management system and advanced computing platform that enables MSD researchers to document and archive their data, run their models and analysis tools, and share their data, software, and workflows within the MSD Community of Practice. Recently, several high-profile datasets have attracted many new users to MSD-LIVE. This webinar has two goals: 1) To refamiliarize the MSD community and new users with the components of the platform (e.g., the data repository, model training notebooks, and data dashboards) and to highlight examples of how these components are advancing MSD science and 2) To demonstrate new features in v3 of the platform, released in late 2025. The main new feature in v3 is the ability to interactively explore data in MSD-LIVE without downloading it. MSD-LIVE users can now click a button in our data repository and launch a blank Jupyter notebook with access to the underlying data on AWS. Users can use the notebook to write analysis, visualization, or subsetting routines that process the data directly on the AWS cloud. We also added a GitHub integration feature that allows users to share analysis or visualization code they develop with the community of MSD-LIVE users. The webinar will wrap up with a look at what's coming next for MSD-LIVE in 2026. Moderator: Patrick M. Reed (MSD CoP Facilitation Team) This webinar was held on: May 12th, 2026 from 1-2 PM EST.

Open Science↗

Legacy Analysis of Dark Matter Annihilation from the Milky Way Dwarf Spheroidal Galaxies with 14 Years of Fermi-LAT Data: Data Products

https://arxiv.org/abs/2311.04982This repository contains data products from the 14 year Fermi-LAT analysis of the Milky Way dSphs as described in McDaniel et al (2023) https://arxiv.org/abs/2311.04982. The included data products are the SED fits files and 2D TS profiles in the WIMP mass and cross section space. These are available for dSphs as well as the blank-field analysis, using both the standard likelihood and the weighted likelihood approach (see Appendix A). CSV data files are included containing relevant information about the dSphs (see table 1 of McDaniel+2024) and blank fields (RA & Dec). Also included is a python Jupyter Notebook to show basic usage of the data products. For Example, plotting the SED likelihoods, converting the SED likelihood to DM space, creating a combined TS profile, obtaining upper limits, etc. This is also stored as a static html file for easier viewing. SEDs are stored as fits files in the output format of fermipy (see https://fermipy.readthedocs.io/en/latest/advanced/sed.html) TS profiles are stored as numpy arrays covering 40 logarithmically spaced mass values over the 1 GeV - 1 TeV mass range and 60 logarithmically spaced cross-section values covering the $10^{-28}$ to $10^{-22}$ cm$^3$/s cross section range. TS profiles including the J-factor prior and without are available, and are labeled with "Jprior" or "noprior" respectively.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

RTN-045: Guidelines for User Tutorials

This document defines the guidelines, principles, and formats for user-facing tutorials that demonstrate how to use the Rubin Science Platform (RSP) to analyze data from the Legacy Survey of Space and Time (LSST). All Rubin staff and the broader science community should use these guidelines when contributing to the sets of Jupyter Notebook or documentation-based tutorials maintained by the Rubin Community Science team (CST).

79 ASTRONOMY AND ASTROPHYSICS↗