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At least 181 records · Page 10

A NON-ISOTHERMAL THEORY FOR INTERPRETING SODIUM LINES IN TRANSMISSION SPECTRA OF EXOPLANETS

We present a theory for interpreting the sodium lines detected in transmission spectra of exoplanetary atmospheres. Previous analyses employed the isothermal approximation and dealt only with the transit radius. By recognizing the absorption depth and the transit radius as being independent observables, we develop a theory for jointly interpreting both quantities, which allows us to infer the temperatures and number densities associated with the sodium lines. We are able to treat a non-isothermal situation with a constant temperature gradient. Our novel diagnostics take the form of simple-to-use algebraic formulae and require measurements of the transit radii (and their corresponding absorption depths) at line center and in the line wing for both sodium lines. We apply our diagnostics to the HARPS data of HD 189733b, confirm the upper atmospheric heating reported by Huitson et al., derive a temperature gradient of 0.4376 ± 0.0154 K km{sup −1}, and find densities ∼1–10{sup 4} cm{sup −3}.

79 ASTRONOMY AND ASTROPHYSICS↗

AS ABOVE, SO BELOW: EXPLOITING MASS SCALING IN BLACK HOLE ACCRETION TO BREAK DEGENERACIES IN SPECTRAL INTERPRETATION

Over the past decade, evidence has mounted that several aspects of black hole (BH) accretion physics proceed in a mass-invariant way. One of the best examples of this scaling is the empirical “fundamental plane of BH accretion” relation linking mass, radio, and X-ray luminosity over eight orders of magnitude in BH mass. The currently favored theoretical interpretation of this relation is that the physics governing power output in weakly accreting BHs depends more on relative accretion rate than on mass. In order to test this theory, we explore whether a mass-invariant approach can simultaneously explain the broadband spectral energy distributions from two BHs at opposite ends of the mass scale but that are at similar Eddington accretion fractions. We find that the same model, with the same value of several fitted physical parameters expressed in mass-scaling units to enforce self-similarity, can provide a good description of two data sets from V404 Cyg and M81*, a stellar and supermassive BH, respectively. Furthermore, only one of several potential emission scenarios for the X-ray band is successful, suggesting it is the dominant process driving the fundamental plane relation at this accretion rate. This approach thus holds promise for breaking current degeneracies in the interpretation of BH high-energy spectra and for constructing better prescriptions of BH accretion for use in various local and cosmological feedback applications.

79 ASTRONOMY AND ASTROPHYSICS↗

Integrating AlphaFold and deep learning for atomistic interpretation of cryo-EM maps

Abstract Interpretation of cryo-electron microscopy (cryo-EM) maps requires building and fitting 3D atomic models of biological molecules. AlphaFold-predicted models generate initial 3D coordinates; however, model inaccuracy and conformational heterogeneity often necessitate labor-intensive manual model building and fitting into cryo-EM maps. In this work, we designed a protein model-building workflow, which combines a deep-learning cryo-EM map feature enhancement tool, CryoFEM (Cryo-EM Feature Enhancement Model) and AlphaFold. A benchmark test using 36 cryo-EM maps shows that CryoFEM achieves state-of-the-art performance in optimizing the Fourier Shell Correlations between the maps and the ground truth models. Furthermore, in a subset of 17 datasets where the initial AlphaFold predictions are less accurate, the workflow significantly improves their model accuracy. Our work demonstrates that the integration of modern deep learning image enhancement and AlphaFold may lead to automated model building and fitting for the atomistic interpretation of cryo-EM maps.

59 BASIC BIOLOGICAL SCIENCES↗

Integrating multimodal data through interpretable heterogeneous ensembles

Motivation: Integrating multimodal data represents an effective approach to predicting biomedical characteristics, such as protein functions and disease outcomes. However, existing data integration approaches do not sufficiently address the heterogeneous semantics of multimodal data. In particular, early and intermediate approaches that rely on a uniform integrated representation reinforce the consensus among the modalities but may lose exclusive local information. The alternative late integration approach that can address this challenge has not been systematically studied for biomedical problems. Results: We propose Ensemble Integration (EI) as a novel systematic implementation of the late integration approach. EI infers local predictive models from the individual data modalities using appropriate algorithms and uses heterogeneous ensemble algorithms to integrate these local models into a global predictive model. We also propose a novel interpretation method for EI models. We tested EI on the problems of predicting protein function from multimodal STRING data and mortality due to coronavirus disease 2019 (COVID-19) from multimodal data in electronic health records. We found that EI accomplished its goal of producing significantly more accurate predictions than each individual modality. It also performed better than several established early integration methods for each of these problems. The interpretation of a representative EI model for COVID-19 mortality prediction identified several disease-relevant features, such as laboratory test (blood urea nitrogen and calcium) and vital sign measurements (minimum oxygen saturation) and demographics (age). These results demonstrated the effectiveness of the EI framework for biomedical data integration and predictive modeling.

59 BASIC BIOLOGICAL SCIENCES↗

The Andromeda gamma-ray excess: background systematics of the millisecond pulsars and dark matter interpretations

ABSTRACT Since the discovery of an excess in gamma rays in the direction of M31, its cause has been unclear. Published interpretations focus on dark matter or stellar related origins. Studies of a similar excess in the Milky Way centre motivate a correlation of the spatial morphology of the signal with the distribution of stellar mass in M31. However, a robust determination of the best theory for the observed excess emission is challenging due to uncertainties in the astrophysical gamma-ray foreground model. We perform a spectro-morphological analysis of the M31 gamma-ray excess using state-of-the-art templates for the distribution of stellar mass in M31 and novel astrophysical foreground models for its sky region. We construct maps for the old stellar populations of M31 based on data from the PAndAS survey and carefully remove the foreground stars. We also produce improved astrophysical foreground models via novel image inpainting techniques based on machine learning methods. Our stellar maps, mimicking the location of a population of millisecond pulsars in the bulge of M31, reach a 5.4σ significance, making them as strongly favoured as the simple phenomenological models usually considered in the literature, e.g. disc-like templates. This detection is robust to generous variations of the astrophysical foreground model. Once the stellar templates are included in the astrophysical model, we show that the dark matter annihilation interpretation of the signal is unwarranted. We demonstrate that about one million unresolved millisecond pulsars naturally explain the observed gamma-ray luminosity per stellar mass, energy spectrum, and stellar bulge-to-disc flux ratio.

79 ASTRONOMY AND ASTROPHYSICS↗

Specific Blood Absorption Parameters for 239 PUO 2 and 238 PUO 2 Nanoparticles and Impacts on Bioassay Interpretation

We have determined specific absorption parameters for 239 PuO 2 and 238 PuO 2 based on available biokinetic data from studies in rodents, and the impacts of these parameters on bioassay interpretation and dosimetry after inhalation of nanoPuO 2 materials have been evaluated. Calculations of activities after an acute intake of nanoparticles of 239 PuO 2 and 238PuO 2 are compared with the corresponding calculations using standard default absorption parameters using the International Commission on Radiological Protection (ICRP) 66 respiratory tract model. Committed effective doses are also evaluated and compared. In this case, it was found that interpretation of bioassay measurements with the assumption that the biokinetic behaviour of PuO 2 nanoparticles is the same as that of micrometre-sized particles can result in an overprediction of the committed effective dose by two orders of magnitude. Although in this case the use of the default assumptions (5 µm AMAD, Type S) for assessing dose following inhalation exposure to airborne PuO 2 nanoparticles appears to be conservative, the evaluation of situations involving PuO 2 nanoparticles that may have different particle size and solubility properties should prudently follow the ICRP recommendation to obtain and use additional, material-specific information whenever possible.

61 RADIATION PROTECTION AND DOSIMETRY↗

Interpreting angle-dependent magnetoresistance in layered materials: Application to cuprates

The evolution of the low-temperature electronic structure of the cuprate metals from the overdoped to the underdoped side has recently been addressed through angle-dependant magnetoresistance (ADMR) experiments in La 1.6-x Nd 0.4 Sr x CuO 4 . Here the results show a striking difference between hole dopings p = 0.24 and p = 0.21, which lie on either side of a putative quantum critical point at intermediate p. Motivated by this, we here study the theory of ADMR in correlated layered materials, paying special attention to the role of angle-dependent quasiparticle weights Z k . Such a Z k is expected to characterize a number of popular models of the cuprate materials, particularly when underdoped. Further, in the limit of weak interlayer hopping the quasiparticle weight will affect the c-axis transport measured in ADMR experiments. We show that proper inclusion of the quasiparticle weight does not support an interpretation of the data in terms of a (π,π) spin density wave ordered state, in agreement with the lack of direct evidence for such order. We show that a simple model of Fermi surface reconfiguring across a van Hove point captures many of the striking differences seen between p = 0.21 and p = 0.24. We comment on why such a model may be appropriate for interpreting the ADMR data, despite having a large Fermi surface at p = 0.21, seemingly in contradiction with other evidence for a small Fermi surface at that doping level.

36 MATERIALS SCIENCE↗

A Tale of Tails. Dark Matter Interpretations of the Fermi GeV Excess in Light of Background Model Systematics

Several groups have identified an extended excess of gamma rays over the modeled foreground and background emissions towards the Galactic center (GC) based on observations with the Fermi Large Area Telescope. The excess emission is compatible in morphology and spectrum with a telltale sign from dark matter (DM) annihilation. Here, we present a critical reassessment of DM interpretations of the GC signal in light of the foreground and background uncertainties that some of us recently outlaid in Calore et al. (2014). We also find that a much larger number of DM models fits the gamma-ray data than previously noted. In particular: (1) In the case of DM annihilation into b¯b, we find that even large DM masses up to m χ ≃74 GeV are allowed at p-value >0.05. (2) Surprisingly, annihilation into nonrelativistic hh gives a good fit to the data. (3) The inverse Compton emission from μ + μ - with m χ ~60–70 GeV can also account for the excess at higher latitudes, |b|>2°, both in its spectrum and morphology. We also present novel constraints on a large number of mixed annihilation channels, including cascade annihilation involving hidden sector mediators. Finally, we show that the current limits from dwarf spheroidal observations are not in tension with a DM interpretation when uncertainties on the DM halo profile are accounted for.

79 ASTRONOMY AND ASTROPHYSICS↗

Crystal Graph Convolutional Neural Networks for an Accurate and Interpretable Prediction of Material Properties

The use of machine learning methods for accelerating the design of crystalline materials usually requires manually constructed feature vectors or complex transformation of atom coordinates to input the crystal structure, which either constrains the model to certain crystal types or makes it difficult to provide chemical insights. Here, we develop a crystal graph convolutional neural networks framework to directly learn material properties from the connection of atoms in the crystal, providing a universal and interpretable representation of crystalline materials. Our method provides a highly accurate prediction of density functional theory calculated properties for eight different properties of crystals with various structure types and compositions after being trained with 10 4 data points. Further, our framework is interpretable because one can extract the contributions from local chemical environments to global properties. Using an example of perovskites, we show how this information can be utilized to discover empirical rules for materials design.

36 MATERIALS SCIENCE↗

R ( 3780 ) Resonance Interpreted as the 1 D 1 3 -Wave Dominant State of Charmonium from Precise Measurements of the Cross Section of e + e − → Hadrons

We report the precise measurements of the cross section of e + e − → hadrons at center-of-mass energies from 3.645 to 3.871 GeV. We thereby perform the most precise study of the cross sections and find a complex system composed of three resonances of R ( 3760 ) , R ( 3780 ) , and R ( 3810 ) . For the first time, we measure the R ( 3810 ) electronic width to be ( 19.4 ± 7.4 ± 12.1 ) eV . For the R ( 3760 ) resonance, we measure the mass to be ( 3751.9 ± 3.8 ± 2.8 ) MeV / c 2 , the total width to be ( 32.8 ± 5.8 ± 8.7 ) MeV , and the electronic width to be ( 184 ± 75 ± 86 ) eV . For the R ( 3780 ) resonance, we measure its mass to be ( 3778.7 ± 0.5 ± 0.3 ) MeV / c 2 , total width to be ( 20.3 ± 0.8 ± 1.7 ) MeV , and electronic width to be ( 265 ± 67 ± 83 ) eV . Forty-seven years ago, the ψ ( 3770 ) resonance was discovered, and was subsequently interpreted as the 1 D 1 3 -wave dominant state of charmonium. However, our analysis of the total-hadron cross sections indicates that the ψ ( 3770 ) is not a single state, but a complex system composed of the R ( 3760 ) , R ( 3780 ) , and R ( 3810 ) resonances. Among these, we interpret the R ( 3780 ) is a resonance dominated by the 1 D 1 3 charmonium state. Published by the American Physical Society 2024

Ablikim, M.↗

Methodology for interpretable reinforcement learning model for HVAC energy control

Deep reinforcement learning (DRL) approaches have been used in various application areas to improve efficiency, optimization, or automation. However, very little is known about how the DRL algorithms make decisions and what features affect their performance. Using a case study of a DRL based Heating, Ventilation and Air Conditioning (HVAC) optimization methodology, we demonstrate how we can address these challenges by applying interpretability tools and systematically exploring the model inputs for better understanding the DRL behaviour and decision making process. We developed a methodology for interpretable reinforcement learning and evaluated our approach in real-world house located in Knoxville, TN. Our findings explain the reasoning behind DRL-based optimization decisions under different circumstances which has been discussed and confirmed by the experts in the field.

Kotevska, Olivera↗

eDNAjoint: An R package for interpreting paired or semi‐paired environmental DNA and traditional survey data in a Bayesian framework

Abstract Environmental DNA (eDNA) sampling is increasingly used in surveys of species distribution as a potentially sensitive and efficient monitoring method. Yet access to modelling tools designed specifically for interpreting this new data type lags behind its ubiquity. While occupancy modelling software has dominated the analytical landscape for eDNA data analysis of single species, this type of model may not always be the most appropriate. The rate of eDNA detection often corresponds to species density, rather than just occupancy, and researchers often have access to observations from non‐genetic sampling methods at the same sites. To provide users access to a modelling framework designed to maximize the use of all available data, we developed an R package, eDNAjoint . The package provides an easy‐to‐use interface for fitting a ‘joint’ model that integrates data from paired or semi‐paired eDNA and traditional surveys in a Bayesian framework. The model can be used to estimate parameters like the probability of a false positive eDNA detection and mean catch rate at a site, and the package allows access to multiple model variations and Bayesian prior customization. Additional functionality can be used for model selection, summarising posteriors and comparing the relative sensitivities of the two survey methods. We demonstrate the use of eDNAjoint by fitting a variation of the model with site‐level covariates that scale the sensitivity of eDNA sampling relative to traditional sampling. The example workflow uses binary eDNA and seine count data for the endangered tidewater goby ( Eucyclogobius newberryi ) from a study by Schmelzle and Kinziger (2016). This use case includes a prior sensitivity analysis and an evaluation of the relationship between detection rates and environmental variables. eDNAjoint has the potential to greatly increase the range of users who will be able to rigorously analyse eDNA and traditional survey data in a Bayesian framework, understand if and how eDNA can improve monitoring practices, and gain confidence in the interpretability of eDNA data.

Keller, Abigail G. [Department of Environment Scie↗

Automating the interpretation of PM 2.5 time–resolved measurements using a data–driven approach

The rapid development of automated measurement equipment enables researchers to collect greater quantities of time-resolved data from indoor and outdoor environments. While significant, the interpretation of the resulting data can be a time-consuming effort. This paper introduces an automated process of interpreting PM 2.5 time-resolved data and differentiating PM 2.5 emissions resulting from indoor and outdoor sources. Here, we use Random Forest (RF), a machine learning approach, to study a dataset of 836 indoor emission events that occurred over a 2-week period in 18 apartments in California. In this paper, we show model development and evaluate its performance as the sample size and source vary. We discuss the characteristics of the dataset that tended to help the source identification and why. For example, we show that data from many events and from different apartments are essential for the model to be suitable for analyzing a new separate dataset. We also show that longitudinal data appear to be more helpful than the time frequency of measurements within a given apartment. We use the resulting RF model to analyze PM 2.5 data of an entirely separate dataset collected from 65 new homes in California. The RF model identifies 442 indoor emission events, with only a few misidentifications.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Tutorial on interpreting x-ray photoelectron spectroscopy survey spectra: Questions and answers on spectra from the atomic layer deposition of Al 2 O 3 on silicon

X-ray photoelectron spectroscopy (XPS) has become the most widely used method for chemically analyzing surfaces. In XPS, photoelectrons are generated by irradiating a surface with X-rays. As the importance and popularity of XPS have grown, it has drawn users without significant XPS experience, and incorrect and incomplete interpretations of XPS spectra regularly appear in the literature. This tutorial is designed as a tool to guide less experienced users in analyzing XPS survey spectra. Here, we examine a series of XPS survey spectra collected during the atomic layer deposition of Al2O3 from trimethylaluminum and water precursors. Prior to this, brief explanations of XPS and atomic layer deposition (ALD) are presented. This tutorial is structured as a series of questions and answers that the interested reader may choose to engage in. The XPS spectra are scrutinized to extract information about the elements present in the film, the presence of contamination, and the nature of the film growth process. The questions and answers in this tutorial address important fundamental issues common to the interpretation of many XPS survey spectra in the context of ALD.

XPS spectrum, Tutorial, Atomic layer deposition↗

On interpretation of fluctuations of conserved charges at high T

Abstract Fluctuations of conserved charges calculated on the lattice which can be measured experimentally, are well reproduced by a hadron resonanse gas model at temperatures below$$T_{ch} \sim 155$$ T ch ∼ 155 MeV and radically deviate from the hadron resonance gas predictions above the chiral restoration crossover. This behaviour is typically interpreted as an indication of deconfinement in the quark-gluon plasma regime. We present an argument that this interpretation may be too simple. The argument is based on the scaling of quantities with the number of colors: demonstration of deconfinement and QGP requires observable that is sensitive to$$\sim N_c^2$$ ∼ N c 2 gluons while the conserved charges are sensitive only to quarks and above$$T_{ch}$$ T ch scale as$$N_c^1$$ N c 1 . The latter scaling is consistent with the existence of an intermediate regime characterized by restored chiral symmetry and by approximate chiral spin symmetry which is a symmetry of confining interaction. In this regime the energy density, pressure and entropy density scale as$$N_c^1$$ N c 1 . In the large$$N_c$$ N c limit this regime might become a distinct phase separated from the hadron gas and from QGP by phase transitions. A natural observable that associates with deconfinement and is directly sensitive to deconfined$$N_c^2-1$$ N c 2 - 1 gluons is the Polyakov loop; in the$$N_c=3$$ N c = 3 world it remains very close to 0 at temperatures well above chiral crossover, reaches the value$$\sim 0.5$$ ∼ 0.5 around$$\sim 3T_{ch}$$ ∼ 3 T ch and the value close to 1 at temperatures$$\sim 1$$ ∼ 1 GeV.

Physics↗

Measurement of high-mass $t\bar{t}\ell ^{+}\ell ^{-}$ production and lepton flavour universality-inspired effective field theory interpretations at $\sqrt{s}=13$ $\text {T}\text {e}\hspace{-1.00006pt}\text {V}$ with the ATLAS detector

Measurements of $t\bar{t}\ell ^{+}\ell ^{-}$ production in the region of high dilepton invariant mass with effective field theory (EFT) interpretations are presented. They are performed using final states with three isolated leptons (electrons or muons) and are based on $\sqrt{s} = 13$ TeV proton–proton collision data with an integrated luminosity of $140\,\textrm{fb}^{-1}$, recorded from 2015 to 2018 with the ATLAS detector at the Large Hadron Collider. Measurements of the $t\bar{t}\ell ^{+}\ell ^{-}$ signal strength and cross-section upper-limits are performed inclusively in lepton flavour and separately for electrons and muons. The study also aims to probe anomalous four-fermion interactions including to test for possible lepton flavor universality violation. No significant deviations from the Standard Model predictions are observed and the measurements are interpreted through the EFT formalism to provide new constraints on the relevant operators.

Aad, G. [CNRS/IN2P3] (ORCID:0000000266654934)↗

Poster Abstract: Leveraging Large Language Models to Reveal Interpretable Cooling Behaviors from Smart Thermostat Data

Frequent heatwaves and hot summers increasingly challenge occupant comfort, health, and energy grid stability. Addressing these challenges requires a detailed understanding of household cooling behaviors, such as thermostat adjustments and adaptive responses to extreme conditions. Traditional analyses often rely on aggregated numerical metrics that overlook subtle but important household-specific variations. In this study, we introduce a generalizable methodology that integrates large language models (LLMs) with vision capabilities to enable scalable and detailed analysis of residential thermostat data. Using Ecobee's Donate Your Data (DYD) dataset—which provides five-minute records of indoor temperatures, thermostat setpoints, and HVAC runtimes—we focus on two U.S. cities with contrasting summer climates : Austin (TX) and Phoenix (AZ). Because raw time-series data are not well suited for direct LLM analysis, we transform them into visual representations, such as daily indoor temperature trajectories and weekly runtime histograms, to better capture behavioral variations. Leveraging LLMs' visual interpretation, we extract descriptive behavioral features, including temperature preferences, time-of-day cooling orientation, anticipatory versus reactive heatwave responses, and behavioral consistency. These semantic features support unsupervised clustering to identify distinct occupant archetypes at scale, revealing differences—such as morning-centric anticipatory coolers versus households that shift toward warmer setpoints during heatwaves—that can inform demand response, resilience planning, and health-aware interventions. By converting raw numerical data into interpretable behavioral patterns, this methodology enables scalable and practical analysis of occupant behavior, supporting actionable insights for comfort, resilience, and energy management.

Nihar, Kopal↗

Physical Interpretation of Early Battery Life Prediction Models

Early battery life prediction models are most useful for R&D if they help us understand the early changes in battery electrochemical response that correspond with long-term degradation and failure. Linear regression models such as Fused lasso and Partial Least Squares can fit coefficients directly to high-dimensional electrochemical data like capacity-voltage and ΔV–state-of-charge, i.e., Q(V) and ΔV(SOC) curves, learning coefficients that can be physically interpreted. We leverage the ISU-ILCC battery aging data set to learn high-dimensional coefficients for early battery life prediction from traditional slow-rate capacity check data, demonstrating learning on Q(V), d Q· d V −1 , and ΔV(SOC) curves. A thorough study on the dependence of coefficient values on train/test size and data preprocessing methods is made, demonstrating the reliability of high-dimensional regression approaches unless very small amounts of data are used for model training. For this data set, coefficients from Q(V) and d Q· d V −1 models highlight changes in electrode stoichiometry due to lithium loss, while ΔV(SOC) coefficients highlight changes in positive electrode diffusivity due to particle cracking as well as electrode stoichiometry shifts. By directly interpreting the coefficients of a regression model, we make physical insights into battery degradation mechanisms without requiring the assumptions of traditional battery data analysis methods.

25 ENERGY STORAGE↗