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At least 181 records · Page 10

Bayesian merging of numerical modeling and remote sensing for saltwater intrusion quantification in the Vietnamese Mekong Delta

Saltwater intrusion has become one of the most concerning issues in the Vietnamese Mekong Delta (VMD) due to its increasing impacts on agriculture and food security of Vietnam. Reliable estimation of salinity plays a crucial role to mitigate the impacts of saltwater intrusion. Here, this study developed a hybrid technique that merges satellite imagery with numerical simulations to improve the estimation of salinity in the VMD. The salinity derived from Landsat images and by numerical simulations was fused using the Bayesian inference technique. The results indicate that our technique significantly reduces the uncertainties and improves the accuracy of salinity estimates. The Nash–Sutcliffe coefficient is 0.74, which is much higher than that of numerical simulation (0.63) and Landsat estimation (0.6). The correlation coefficient between the ensemble and measured salinity is relatively high (0.88). The variance of the ensemble salinity errors (5.0 ppt 2 ) is lower than that of Landsat estimation (10.4 ppt 2 ) and numerical simulations (9.6 ppt 2 ). The proposed approach shows a great potential to combine multiple data sources of a variable of interest to improve its accuracy and reliability wherever these data are available.

54 ENVIRONMENTAL SCIENCES↗

Stennis Space Center Salinity Drifter Project. A Collaborative Project with Hancock High School, Kiln, MS

Presentation topics include: importance of salinity of coastal waters, habitat switching algorithm, habitat switching module, salinity estimates from Landsat for Sabine Calcasieu Basin, percent of time inundated in 2006, salinity data, prototyping the system, system as packaged for field tests, salinity probe and casing, opening for water flow, cellular antenna used to transmit data, preparing to launch, system is launched in the Pearl River at Stennis Space Center, data are transmitted to Twitter by cell phone modem every 15 minutes, Google spreadsheet I used to import the data from the Twitter feed and to compute salinity (from conductivity) and display charts of salinity and temperature, results are uploaded to NASA's Applied Science and Technology Project Office Webpage.

Kalcic, Maria↗

Genome sequence, phylogenetic analysis, and structure-based annotation reveal metabolic potential of Chlorella sp. SLA-04

Algae are a broad class of photosynthetic eukaryotes that are phylogenetically and physiologically diverse. Most of the phylogenetic diversity has been inferred from 18S rDNA sequencing since there are only a few complete genomes available in public databases. Here we use ultra-long-read Nanopore sequencing to determine a gapless, telomere-to-telomere complete genome sequence of Chlorella sp. SLA-04, previously described as Chlorella sorokiniana SLA-04. Chlorella sp. SLA-04 is a green alga that grows to high cell density in a wide variety of environments - high and neutral pH, high and low alkalinity, and high and low salinity. SLA-04's ability to grow in high pH and high alkalinity media without external CO 2 supply is favorable for large-scale algal biomass production. Phylogenetic analysis performed using ribosomal DNA and conserved protein sequences consistently reveal that Chlorella sp. SLA-04 forms a distinct lineage from other strains of Chlorella sorokiniana. We complement traditional genome annotation methods with high throughput structural predictions and demonstrate that this approach expands functional prediction of the SLA-04 proteome. Genomic analysis of the SLA-04 genome identifies the genes capable of utilizing TCA cycle intermediates to replenish cytosolic acetyl-CoA pools for lipid production. We also identify a complete metabolic pathway for sphingolipid anabolism that may allow SLA-04 to readily adapt to changing environmental conditions and facilitate robust cultivation in mass production systems. Altogether, this work clarifies the phylogeny of Chlorella sp. SLA-04 within Trebouxiophyceae and demonstrates how structural predictions can be used to improve annotation beyond sequencebased methods.

59 BASIC BIOLOGICAL SCIENCES↗

CO2 Saline Storage Talk at the University of Wyoming

These are slides presented virtually to a class on Carbon Capture and Storage (CCS) at the University of Wyoming in Laramie WY. The talk was on the basics of carbon storage in saline formations and reviewed basic geology, important physical properties of CO2 and brine, how fluids flow in the subsurface, environmental risks associated with CO2 storage, the regulations governing CO2 saline storage, and high-level design considerations. The FECM/NETL CO2 Saline Storage Cost Model was used to illustrate how geologic properties vary in different regions of the US (PA, IL and WY) and how the performance of CO2 storage and the cost of CO2 CO2 saline storage depends on geology (October 23, 2024).

Morgan, David↗

Mobility of heavy rare earth elements in magmatic-hydrothermal systems: Experimental determination of DyPO 4 solubility in supercritical fluids

Dysprosium (Dy) is part of the heavy rare earth elements (REE) and a critical component in the production of high-performance super magnets used in wind turbines, electric vehicles, and other green technologies. The HREE phosphate, xenotime, is commonly associated with hydrothermal systems, where the mobility, fractionation, and deposition of REE are controlled by the stability of aqueous complexes and solubility of REE minerals which depend on temperature, pressure, and fluid composition (salinity, pH, and ligand availability). Here, we conducted a series of synthetic DyPO 4 solubility experiments in NaCl-HCl-bearing aqueous solutions (pH of 2 at 25 °C) from 500 to 700 °C and 1.5 kbar using externally heated pressure vessels. DyPO 4 displays a strong prograde solubility with temperature across all studied fluid salinities (0–0.5 m NaCl). The DyPO₄ solubility isotherms at 500 °C, 600 °C, and 700 °C show a complex relationship with salinity where DyPO₄ solubility is highest (39.2–1552 ppm at 500–700 °C) in 0 m NaCl solutions, decreases strongly (21–331 ppm at 500–700 °C) in the 0.06 m NaCl solutions and remains relatively constant in the 0.25 m (42.8–248 ppm) and 0.5 m NaCl (40.2–124 ppm) solutions. Thermodynamic modeling suggests that pH increases as a function of temperature and salinity, and controls solubility due to the stability of chloride complexes (i.e., DyCl +2 and DyCl 2 + ) at 500–600 °C, transitioning to hydroxyl complexes (i.e., Dy(OH) 3 0 ) dominating at 700 °C and relatively alkaline pH. Comparison with NdPO 4 solubility data indicates that the light REE in monazite is significantly more soluble than the heavy REE in xenotime in saline fluids at high temperature (500–700 °C), implying efficient light/heavy REE fractionation in supercritical fluids. The lower solubility of DyPO 4 relative to NdPO 4 suggests that at high temperatures, acidic (pH 2–4), low-salinity (∼5 wt% NaCl) fluids will favor the precipitation of xenotime over monazite as it will cool from 700 °C to below 500 °C. These observations align with paragenetic mineral assemblages in NYF pegmatites (e.g., Baveno, Italy), where xenotime commonly immobilizes heavy REE during the high-temperature hydrothermal stages.

58 GEOSCIENCES↗

Mapping Delaware's coastal vegetation and land use from aircraft and satellites

It is pointed out that coastal wetlands of the type found along the entire East Coast of the U.S. are well suited to remote sensing techniques, particularly multispectral analysis. Use of high altitude RB-57 and U-2 color-infrared imagery in the mapping of vegetation in Delaware's saline marshes was highly successful. Details of the mapping approach are discussed together with the use of automated multispectral analysis and the correlation of ERTS imagery.

Klemas, V.↗

Warm and Saline Events Embedded in the Meridional Circulation of the Northern North Atlantic

Ocean state estimates from 1958 to 2005 from the Simple Ocean Assimilation System (SODA) system are analyzed to understand circulation between subtropical and subpolar Atlantic and their connection with atmospheric forcing. This analysis shows three periods (1960s, around 1980, and 2000s) with enhanced warm, saline waters reaching high latitudes, alternating with freshwater events originating at high latitudes. It complements surface drifter and altimetry data showing the subtropical -subpolar exchange leading to a significant temperature and salinity increase in the northeast Atlantic after 2001. The warm water limb of the Atlantic meridional overturning cell represented by SODA expanded in density/salinity space during these warm events. Tracer simulations using SODA velocities also show decadal variation of the Gulf Stream waters reaching the subpolar gyre and Nordic seas. The negative phase of the North Atlantic Oscillation index, usually invoked in such variability, fails to predict the warming and salinization in the early 2000s, with salinities not seen since the 1960s. Wind stress curl variability provided a linkage to this subtropical/subpolar gyre exchange as illustrated using an idealized two ]layer circulation model. The ocean response to the modulation of the climatological wind stress curl pattern was found to be such that the northward penetration of subtropical tracers is enhanced when amplitude of the wind stress curl is weaker than normal. In this case both the subtropical and subpolar gyres weaken and the subpolar density surfaces relax; hence, the polar front moves westward, opening an enhanced northward access of the subtropical waters in the eastern boundary current.

Hakkinen, Sirpa↗

Increased salinity decreases annual gross primary productivity at a Northern California brackish tidal marsh

Tidal marshes sequester 11.4–87.0 Tg C yr –1 globally, but climate change impacts can threaten the carbon capture potential of these ecosystems. Tidal marshes occur across a wide range of salinity, with brackish marshes (0.5–18 ppt (parts per thousand)) dominating global tidal marsh extents. A diverse mix of freshwater- and saltwater-tolerant plant and microbial communities has led researchers to predict that carbon cycling in brackish wetlands may be less sensitive to changes in salinity than fresh- or saltwater wetlands. Rush Ranch, a well-monitored brackish tidal wetland of the San Francisco Bay National Estuarine Research Reserve, experiences highly variable annual salinity regimes. Within a five-year period (2014–2018), Rush Ranch experienced particularly extreme drought-induced salinization during the 2014 and 2015 growing seasons. During drought years, tidal channel salinity rose from a 15 year baseline of 4.7 ppt to growing season peaks of 10.3 ppt and 12.5 ppt. Continuous eddy covariance data from 2014 to 2018 demonstrate that during drought summers, gross primary productivity (GPP) decreased by 24%, whereas ecosystem respiration remained similar among all five years. Stepwise linear regression revealed that salinity, not air temperature or tidal height, was the dominant driver of annual GPP. A random forest model trained to predict GPP based on environmental data from low salinity years (i.e. naive to salinization) significantly over predicted GPP in drought years. When growing season salinities were doubled, annual estimates of net ecosystem exchange of CO 2 decreased by up to 30%. These results provide ecosystem-scale evidence that increased salinity influences CO 2 fluxes dominantly through reductions in GPP. This relationship provides a starting point for incorporating the effect of changes in salinity in wetland carbon models, which could improve wetland carbon forecasting and management for climate resilience.

54 ENVIRONMENTAL SCIENCES↗

Remote sensing of salinity

The complex dielectric constant of sea water is a function of salinity at 21 cm wavelength, and sea water salinity can be determined by a measurement of emissivity at 21 cm along with a measurement of thermodynamic temperature. Three aircraft and one helicopter experiments using two different 21 cm radiometers were conducted under different salinity and temperature conditions. Single or multiple ground truth measurements were used to calibrate the data in each experiment. It is inferred from these experiments that accuracies of 1 to 2%/OO are possible with a single surface calibration point necessary only every two hours if the following conditions are met--water temperatures above 20 C, salinities above 10%/OO, and level plane flight. More frequent calibration, constraint of the aircraft's orientation to the same as it was during calibration, and two point calibration (at a high and low salinity level) rather than single point calibration may give even better accuracies in some instances.

Thomann, G. C.↗

Reactive Transport Simulations of High-Tempertature Geologic Thermal Energy Storage (GeoTES) in Deep Saline Formations - I/O Files

Simulation input and output files, post-processed figures and excel tables, and tecplot layout files for generating figures. These simulations were run with TOUGHREACT V4.12 by Lawrence Berkeley National Laboratory in 2021. This work was completed as part of the geologic thermal energy storage (GeoTES) research project reported in the final report for Phase I of this work, which is linked below.

15 GEOTHERMAL ENERGY↗

Mobilization of trace metals from caprock and formation rocks at the Illinois Basin – Decatur Project demonstration site under geological carbon dioxide sequestration conditions

One concern for geologic CO 2 sequestration is the potential leakage of CO 2 or CO 2 -saturated brine containing trace metals into overlying aquifers, which poses the risk of adversely affecting underground sources of drinking water. In this work, rock and brine samples collected in the Illinois Basin – Decatur Project (IBDP), a large-scale geological CO 2 sequestration demonstration project in Decatur, Illinois, USA, as well as synthetic brine samples were used to understand the mobilization of trace metals as a result of CO 2 –rock–brine interactions under IBDP-specific conditions (50 °C and 20.6 MPa). Rock sample characterization indicated that, at the IBDP site, trace metal concentrations were greatest in cap rock samples from the Eau Claire Formation, compared with those from formations above and below this Formation. The natural brine samples collected from the Mt. Simon Sandstone reservoir were highly reducing and saline, with trace metal concentrations up to 680 times greater than the U.S. Environmental Protection Agency-prescribed drinking water standards. Batch leaching experiments indicated that both trace metal mobilization from rock and immobilization from the brine occurred when high-pressure CO 2 was introduced into the rock-brine system. The amounts of metals mobilized from the rock generally accounted for <5% of the total metals in the rock, but for some metals, including Ni, Pb, and Tl, up to 63% of the metals in the rock were mobilized to the brine. Leaching of trace metals into synthetic brines was different from that into the natural brine. The results of this study provided current information on the trace element sources and will help in risk simulations and experimental design to further evaluate potential impact of leakage on groundwater quality, which is important for future GCS projects to consider for monitoring and containment assurance purposes.

58 GEOSCIENCES↗

A Synthetic Transcription Factor and Core Promoter System in Picochlorum renovo Enables Tunable Gene Expression

Picochlorum renovo is a recently characterized microalga of industrial interest. Its rapid growth rate, and high temperature and salinity tolerances make P. renovo an attractive candidate for industrial scale cultivation and downstream production of sustainable fuels and chemicals. Currently, genetic tools for many non-model microalgae are limited and would greatly benefit from an orthogonal gene expression system to bypass host regulation. Additionally, the engineering of complex metabolic pathways in eukaryotic organisms to optimize growth or biosynthesize high value products often requires tunable expression of each gene in a pathway. Here we explore a tunable orthogonal gene expression system using a synthetic transcription factor (sTF) and core promoters (CPs) conferring expression of the fluorescent protein mCherry to quantify protein expression. The sTF paired with the relevant binding site (BS) led to an ~5X increase in reporter gene expression compared to the native RuBisCo promoter, however had limited tunability with increasing BS number. Quantification of mCherry expression under 34 different CPs paired with the sTF and BS showed an order of magnitude of expression tunability. Future work with this system will entail generation of an overexpression library via random integration of the relevant BS in an sTF expressing P. renovo strain. With this sTF and CP system we aim to greatly improve growth rates and product titers in photosynthetic organisms, while also providing a potentially universal gene expression system for microalgae.

algae↗

Recent Advances in Picochlorum renovo Strain Development

Microalgae are amongst the most efficient phototrophs for the reduction of CO2 to industrially relevant products and product intermediates. We have recently identified a novel species in the genus Picochlorum (Picochlorum renovo) that demonstrates high areal productivity (>30 g/m2/day), high temperature and salinity tolerances, and rapid growth rate (-2 hour doubling time): attributes essential for economically viable industrial scale deployment for low value commodities (e.g. fuel and chemical precursors). Following screening of >300 algal isolates to identify Picochlorum renovo, we developed baseline genetic tools necessary for genetic engineering of the nucleus and chloroplast, and further built upon these tools to establish a protein secretion system. We have also deployed genetic engineering tools to establish the utilization of phosphite as a selectable marker in the chloroplast and nuclear genomes, while concurrently acting as a potential crop protection strategy. We have further implemented these tools to enable the utilization of formate as a novel carbon source for phototroph cultivation. Explicitly, formate toxicity was assayed, followed by introduction of a formate dehydrogenase to allow formate utilization. Cultures supplemented with formate grew to a higher density when cultivated under ambient CO2, highlighting the potential for this strategy to increase growth. Additionally, we have established a synthetic transcription factor and core promoter system which lays the foundation for tunable, high expression engineering in the nuclear genome, and potentially can be applied for universal algal genetic engineering. Finally, current work has focused on direct photosynthetic production of chemicals, and generation of mutant libraries. Combined, our work has established a robust genetic toolbox for Picochlorum renovo, which we have deployed for strain development purposes to introduce biotechnologically relevant traits.

algae↗

Microbial colonization and persistence in deep fractured shales is guided by metabolic exchanges and viral predation

Background: Microbial colonization of subsurface shales following hydraulic fracturing offers the opportunity to study coupled biotic and abiotic factors that impact microbial persistence in engineered deep subsurface ecosystems. Shale formations underly much of the continental USA and display geographically distinct gradients in temperature and salinity. Complementing studies performed in eastern USA shales that contain brine-like fluids, here we coupled metagenomic and metabolomic approaches to develop the first genome-level insights into ecosystem colonization and microbial community interactions in a lower-salinity, but high-temperature western USA shale formation. Results: We collected materials used during the hydraulic fracturing process (i.e., chemicals, drill muds) paired with temporal sampling of water produced from three different hydraulically fractured wells in the STACK (Sooner Trend Anadarko Basin, Canadian and Kingfisher) shale play in OK, USA. Relative to other shale formations, our metagenomic and metabolomic analyses revealed an expanded taxonomic and metabolic diversity of microorganisms that colonize and persist in fractured shales. Importantly, temporal sampling across all three hydraulic fracturing wells traced the degradation of complex polymers from the hydraulic fracturing process to the production and consumption of organic acids that support sulfate- and thiosulfate-reducing bacteria. Furthermore, we identified 5587 viral genomes and linked many of these to the dominant, colonizing microorganisms, demonstrating the key role that viral predation plays in community dynamics within this closed, engineered system. Lastly, top-side audit sampling of different source materials enabled genome-resolved source tracking, revealing the likely sources of many key colonizing and persisting taxa in these ecosystems. Conclusions: These findings highlight the importance of resource utilization and resistance to viral predation as key traits that enable specific microbial taxa to persist across fractured shale ecosystems. We also demonstrate the importance of materials used in the hydraulic fracturing process as both a source of persisting shale microorganisms and organic substrates that likely aid in sustaining the microbial community. Moreover, we showed that different physicochemical conditions (i.e., salinity, temperature) can influence the composition and functional potential of persisting microbial communities in shale ecosystems. Together, these results expand our knowledge of microbial life in deep subsurface shales and have important ramifications for management and treatment of microbial biomass in hydraulically fractured wells.

59 BASIC BIOLOGICAL SCIENCES↗

Identifying biomass yield potential of tetra, hexa, and octoploid prairie cordgrass populations grown on marginal lands

As the demand for renewable energy sources with reduced carbon emissions to the atmosphere increases, bioenergy crops remain an attractive alternative to fossil fuels. Another appeal of bioenergy crops is the potential utilization of marginal lands not suitable for food crops. Prairie cordgrass is a perennial warm season polyploid grass species being considered as a bioenergy crop that also exhibits a high tolerance for salinity and flooding. The ploidy level of prairie cordgrass has previously been suggested to correlate with agronomic traits. However, little is known about the agricultural performance of prairie cordgrass on marginal lands and if a correlation of ploidy level to stress tolerance exists. In this experiment, the productivity of tetraploids, hexaploids, and octoploids was investigated when grown on three different marginal sites including waterlogged, saline, and low-nutrient gravelly soils. Here we found that prairie cordgrass populations annually produced dry biomass on a wet marginal site comparable to normal cropland. However, the productivity was remarkedly decreased at both a salt-affected site and a limestone mine reclamation site. We were unable to conclude that different ploidy levels affected the biomass yield of prairie cordgrass grown under abiotic stress. However, there was a differential response of populations to various types of marginal sites. Finally, these results indicate potential genetic resources for developing breeding targets and identifying mechanisms of abiotic stress tolerance. Moreover, we highlight the need to generate diverse ploidy levels of prairie cordgrass in the same genetic backgrounds for future testing.

09 BIOMASS FUELS↗

Development of the high-productivity marine microalga, Picochlorum renovo , as a photosynthetic protein secretion platform

Microalgae are remarkable in their ability to convert CO 2 and sunlight into renewable biomass and bioproducts. In this work, we have established a novel photosynthetic protein production platform via computational prediction and genetic engineering using native microalgal protein secretory signal peptides to achieve functional secretion of the fluorescent protein mCherry. Importantly, this work was conducted in the recently characterized alga Picochlorum renovo, an alga of industrial interest due to its rapid growth rate, tolerance to both high temperature and salinity, and genetically tractable nuclear and chloroplast genomes. Genomic queries allowed the identification of native secretory signal peptides, which were N-terminally fused to mCherry allowing for secretion into the culture supernatant. Further characterization revealed no impact on fitness, a production rate of 0.19 mg/L/day, and titer of 0.37 mg/L of transgenic mCherry protein in culture supernatant. These findings lay the foundation for applied genetic engineering approaches that could enable CO 2 -sequestering, sustainable photoproduction of industrially relevant enzymes at low cost.

59 BASIC BIOLOGICAL SCIENCES↗