Biosynth Pipeline v1.0

Backman, Tyler [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]; Chainani, Yash [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]; Diaz, Jacob [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]

doi:10.11578/dc.20260225.1

DOE OSTI · code-176534

Biosynth Pipeline v1.0

Backman, Tyler [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]·Chainani, Yash [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]·Diaz, Jacob [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]

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Abstract

BioPKS Pipeline is a computational pipeline for retrosynthetic design of small molecule biosynthesis pathways (e.g. retrobiosynthesis). It combines capabilities by interfacing with existing retrobiosynthesis tools- RetroTide (developed at LBNL) and DORAnet to create pathways that combine multiple biosynthesis approaches- both megasynthase assembly line enzymes and single step enzymes.

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Backman, Tyler [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)], Chainani, Yash [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)], Diaz, Jacob [Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)]. 2026-02-25. Biosynth Pipeline v1.0. https://doi.org/10.11578/dc.20260225.1

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