NASA NTRS · 20170000751
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Tran, Peter B., Berrios, Daniel C., Gurram, Mohana M.. 2016-10-28. GeneLab Data Systems (GLDS) Workshop. https://ntrs.nasa.gov/citations/20170000751
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Evidence from the International Space Station suggests microbial populations are rapidly adapting to the spacecraft environment; however, the mechanism of this adaptation is not understood. Bacteriophages are prolific mediators of bacterial adaptation on Earth. Here we survey 245 genomes sequenced from bacterial strains isolated on the International Space Station for dormant (lysogenic) bacteriophages. Our analysis indicates phage-associated genes are significantly different between spaceflight strains and their terrestrial counterparts. Additionally, we identify 283 complete prophages, those that could initiate bacterial lysis and infect additional hosts, of which 21% are novel. These prophage regions encode functions that correlate with increased persistence in extreme environments, such as spaceflight, to include antimicrobial resistance and virulence, DNA damage repair, and dormancy. Our results correlate microbial adaptation in spaceflight to bacteriophage-encoded functions that may impact human health in spaceflight.
Technological advances are required to support principal science objectives of missions to the solar system’s icy worlds to seek biosignatures of past/extant life. Sensitivity and reliability are key concerns due to small sample sizes (µL – mL) and the extraordinary import of the results. The preparation and processing of small samples can constrain limits of detection (LoDs); therefore, the Charged Information-storage Polymer Preparation System (ChIPPS) project is advancing the technologies of autonomous sample preparation and processing to add a new class of reliably detectable biosignatures: charged polymers and particles, which can be the information storage-and-transmission means for life. Specifically, we are developing an integrated microfluidic sample-processing unit to prepare icy-world samples to support complementary solid-state nanopore-based analyses: 1) charged-polymer analysis, to characterize variations in polymer chain size, shape, and charge vs. position along the chain; 2) polymer and nanoparticle sizing-and-counting, to characterize the relative abundance of polymer chains, as well as small (virus-sized) particles, by their dimensions and charge. Although no such autonomous system presently exists, such measurements can reveal the nature and abundance of charged polymers that could be used by biological systems to store and transfer information—as DNA and RNA are used terrestrially—without limitation to terrestrial nucleic acids, given that life elsewhere may utilize different information store-and-transfer moieties. Key system components include (a) a lysis unit for mechanical sample disruption; b) an ion-exchange column for charged macromolecule/nanoparticle purification; c) dialyzer to remove excess salt; d) concentrator to enhance signal; e) supporting pumps, valves, bubble traps, connectors, filters, etc.; f) interface to nanopore detection instruments.
Humans are poised to explore deep space: the realm of space beyond Earth's orbit. NASA will soon send humans back to the Moon with the Artemis program, and is developing programs to support crewed missions to Mars. Human exploration of such new environments demands fundamental research that can provide the knowledge necessary to ensure the safety of explorers and aid in the development of a sustainable presence in space. Accordingly, the Agency's Moon to Mars objectives1 include three goals in the area of Human Biological Sciences (HBS-1, -2, -3), with the aim to "Advance understanding of how biology responds to the environments of the Moon, Mars, and deep space to advance fundamental knowledge, support safe, productive human space missions and reduce risks for future exploration." Advancing this understanding is a task that is both complex-- comprising diverse organisms, processes, and methods-- and difficult-- because the very aspects of deep space that we strive to understand are the aspects that make it hard to conduct research in that environment. This report of the Beyond LEO Instrumentation & Science Series Science Working Group (BLISS-SWG) represents input from a group of scientists from diverse disciplines within the space biology research and engineering community on the nature of the science and technology that can be used to achieve those aims.