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Zhu, Ping

Publications and source records attributed to Zhu, Ping.

16 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Overview of the recent experimental research on the J-TEXT tokamak

The J-TEXT capability is enhanced compared to two years ago with several upgrades of its diagnostics and the increase of electron cyclotron resonance heating (ECRH) power to 1 MW. With the application of electron cyclotron wave (ECW), the ECW assisted plasma startup is achieved; the tearing mode is suppressed; the toroidal injection of 300 kW ECW drives around 24 kA current; fast electrons are generated with toroidal injected ECW and the runaway current conversion efficiency increases with ECRH power. The mode coupling between 2/1 and 3/1 modes are extensively studied. The coupled 2/1 and 3/1 modes usually lead to major disruption. Their coupling can be either suppressed or avoided by external resonant magnetic perturbation fields and hence avoids the major disruption. It is also found that the 2/1 threshold of external field is significantly reduced by a pre-excited 3/1 mode, which can be either a locked island or an external kink mode. The disruption control is studied by developing prediction methods capable of cross tokamak application and by new mitigation methods, such as the biased electrode or electromagnetic pellet injector. The high-density operation and related disruptions are studied from various aspects. Approaching the density limit, the collapse of the edge shear layer is observed and such collapse can be prevented by applying edge biasing, leading to an increased density limit. The density limit is also observed to increase, if the plasma is operated in the poloidal divertor configuration or the plasma purity is increased by increasing the pre-filled gas pressure or ECRH power during the start-up phase.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Enhanced plasma current spike formation due to onset of 1/1 kink-tearing reconnection during a massive gas injection process

The formation of the plasma current spike at the end of the thermal quench (TQ) phase is studied systematically, which is found to strongly correlate with the onset of the 1/1 kink-tearing reconnection only in the simulation results presented here. Here, the magnetohydrodynamic activity on the q = 1 surface plays a critical role in the spike formation and the disruption process. In particular, when the safety factor in the magnetic axis q 0 exceeds 1, the plasma major disruption transits into successive minor disruptions, and the start of the TQ phase is delayed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2023

Destabilizing effects of edge infernal components on resistive wall modes in advanced tokamak scenarios

The stability of the n = 1 resistive wall modes (RWMs) dominated by the pressure-driven infernal components is investigated using the ideal magnetohydrodynamics (MHD) code AEGIS for the advanced tokamak scenarios. Here, n is the toroidal mode number. In the advanced tokamak scenarios, due to the large fraction of bootstrap current contribution, the profile of safety factor q is deeply reversed in magnetic shear in the central core region and locally flattened within the edge pedestal. Consequently, the pressure-driven infernal components develop in the corresponding flat-q regions of both core and edge. However, the edge infernal components dominate the n = 1 RWM structure and lead to lower β N limits for the advanced tokamak scenarios. In the framework of ideal MHD, the edge rotation is found the most critical to the stabilization due to the dominant influence of the edge infernal components, which should be maintained sufficiently large in magnitude and range in order for the rotation alone to fully suppress the n = 1 RWM in typical advanced tokamak scenarios.

36 MATERIALS SCIENCE↗
DOE OSTI2023

Quasi-static magnetic compression of field-reversed configuration plasma: amended scalings and limits from two-dimensional MHD equilibrium

In this work, several key scaling laws of the quasi-static magnetic compression of field reversed configuration (FRC) plasma (Spencer et al 1983 Phys. Fluids 26 1564) are amended from a series of two-dimensional FRC MHD equilibriums numerically obtained using the Grad–Shafranov equation solver NIMEQ. Based on the new scaling for the elongation and the magnetic fields at the separatrix and the wall, the empirically stable limits for the compression ratio, the fusion gain, and the neutron yield are evaluated, which may serve as a more accurate estimate for the upper ceiling of performance from the magnetic compression of FRC plasma as a potential fusion energy as well as neutron source devices.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Frequency multiplication with toroidal mode number of kink/fishbone modes on a static HL-2A-like tokamak

In the presence of energetic particles (EPs), the long-lived mode (LLM) frequency multiplication with n = 1, 2, 3, or higher is often observed on HL-2A, where n is the toroidal mode number. Hybrid kinetic-MHD model simulations of the energetic particle (EP) driven kink/fishbone modes on a static HL-2A-like tokamak using NIMROD code find that when the background plasma pressure is relatively high, and the EP pressure and the beam energy are relatively low, the mode frequency increases almost linearly with EP pressure, and the frequency is proportional to n (‘frequency multiplication’), even in the absence of any equilibrium plasma rotation. In addition, the frequency multiplication persists as the safety factor at the magnetic axis q 0 varies. In the absence of EPs, the growth rate of the 1/1 mode is the largest; however, as the EP pressure increases, the growth rate of 2/2 modes or 3/3 modes becomes dominant, suggesting that higher-n modes are more vulnerable to EPs. These results may shed light on the understanding of the toroidal mode number dependence of kink/fishbone modes in the advanced scenarios of tokamaks with weak or reversed central magnetic shear.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

Electron pulse train accelerated by a linearly polarized Laguerre–Gaussian laser beam

A linearly polarized Laguerre–Gaussian (LP-LG) laser beam with a twist index $l$ = –1 has field structure that fundamentally differs from the field structure of a conventional linearly polarized Gaussian beam. Close to the axis of the LP-LG beam, the longitudinal electric and magnetic fields dominate over the transverse components. This structure offers an attractive opportunity to accelerate electrons in vacuum. It is shown, using three-dimensional particle-in-cell simulations, that this scenario can be realized by reflecting an LP-LG laser off a plasma with a sharp density gradient. The simulations indicate that a 600 TW LP-LG laser beam effectively injects electrons into the beam during the reflection. The electrons that are injected close to the laser axis experience a prolonged longitudinal acceleration by the longitudinal laser electric field. The electrons form distinct monoenergetic bunches with a small divergence angle. The energy in the most energetic bunch is 0.29 GeV. The bunch charge is 6 pC and its duration is approximately 270 as. The divergence angle is just 0.57° (10 mrad). By using a linearly polarized rather than a circularly polarized Laguerre–Gaussian beam, our scheme makes it easier to demonstrate the electron acceleration experimentally at a high-power laser facility.

43 PARTICLE ACCELERATORS↗
DOE OSTI2022

Plant metacaspase: A case study of microcrystal structure determination and analysis

Metacaspases are highly conserved in plants and play essential roles in mediating programmed cell death, biotic and abiotic stress responses, and damage-induced innate immunity. Ca 2+ signaling induced by plant damage leads to activation of metacaspase from Arabidopsis thaliana (AtMC4), which subsequently processes a plant elicitor peptide to trigger downstream immuno-response. To understand the structural basis of AtMC4 activation by Ca 2+ , we previously determined its crystal structure and performed in-crystal Ca 2+ treatment to probe activation-associated conformational changes. To enable structure determination and in-crystal Ca 2+ activation analysis, we used microcrystals and related methods which were essential for our successful approach. Here, in this paper, we describe in detail the methods that we used for determination of AtMC4 structure using single-wavelength isomorphous replacement with anomalous signals assembled from 22 microcrystals. We also describe the method for in-crystal Ca 2+ soaking, microcrystal data collection, data assembly and analysis to obtain the activated structure of AtMC4 from 91 micro-sized crystals. The described methods may be useful to study other plant metacaspases and more broadly other plant enzymes for their structure determination and in-crystal functional characterization.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Two-dimensional shaping of Solov'ev equilibrium with vacuum using external coils

In this work, we demonstrate a method for constructing the Solov'ev equilibrium with any given 2D shape surrounded by a vacuum region using external poloidal field coils, based on the method previously developed by T. Xu and R. Fitzpatrick [Nuclear Fusion, 59, 064002 (2019)]. The computational domain consists of two parts: the plasma region, where the solution is the same as the Solov'ev solution, and the vacuum region, where the magnetic field generated by external coils as well as plasma current is determined using the Green function method through a matching condition near the separatrix. However, the method is not limited to the Solov'ev equilibrium in particular. In conclusion, the accuracy, efficiency, and robustness of such a scheme suggest that this method may be applied to the 2D shaping of a tokamak plasma with a vacuum region using external coils in general.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

A resistive MHD model and simulation on plasma flow evolution in the presence of resonant magnetic perturbation in a tokamak

Nonaxisymmetric magnetic fields such as the intrinsic error field and the externally applied resonant magnetic perturbation (RMP) in a tokamak are known to influence the plasma momentum transport and flow evolution through plasma response, which itself strongly depends on the plasma flow as well. The nonlinear interaction between plasma response and flow has been previously modeled in the conventional error field theory with the “no-slip” condition, which has been recently extended to allow the “free-slip” condition. In this work, we further target this specific process and numerically simulate the nonlinear plasma response and flow evolution in the presence of a single-helicity RMP in a circular-shaped model tokamak configuration, based on the full resistive MHD model in the initial-value code NIMROD. Time evolution of the parallel (to k) flow or “slip frequency” profile and its asymptotic steady state obtained from the NIMROD simulations are compared with both conventional and extended nonlinear response theories. Here, k is the wave vector of the propagating island. Good agreement with the extended theory with free-slip condition has been achieved for the parallel flow profile evolution in response to RMP in all resistive regimes, whereas the difference from the conventional theory with the no-slip condition tends to diminish as the plasma resistivity approaches zero.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2022

The flying spider-monkey tree fern genome provides insights into fern evolution and arborescence

To date, little is known about the evolution of fern genomes, with only two small genomes published from the heterosporous Salviniales. Here we assembled the genome of Alsophila spinulosa, known as the flying spider-monkey tree fern, onto 69 pseudochromosomes. The remarkable preservation of synteny, despite resulting from an ancient whole-genome duplication over 100 million years ago, is unprecedented in plants and probably speaks to the uniqueness of tree ferns. Our detailed investigations into stem anatomy and lignin biosynthesis shed new light on the evolution of stem formation in tree ferns. We identified a phenolic compound, alsophilin, that is abundant in xylem, and we provided the molecular basis for its biosynthesis. Finally, analysis of demographic history revealed two genetic bottlenecks, resulting in rapid demographic declines of A. spinulosa. The A. spinulosa genome fills a crucial gap in the plant genomic landscape and helps elucidate many unique aspects of tree fern biology.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Advances in physics and applications of 3D magnetic perturbations on the J-TEXT tokamak

In the last two years, three major technical improvements have been made on J-TEXT in supporting of the expanded operation regions and diagnostic capabilities. (1) The successful commission of the 105 GHz/500 kW/1 s electron cyclotron resonance heating (ECRH) system increasing the core electron temperature from 0.9 keV up to around 1.5 keV. (2) The poloidal divertor configuration with an X-point in the high-field side has been achieved. In particular, the 400 kW electron cyclotron wave has also been successfully injected into the diverted plasma. (3) A 256-channel electron cyclotron emission imaging diagnostic system and two sets of four-channel Doppler backscattering diagnostics have been successfully developed on J-TEXT, allowing detailed measurement of the electron temperature and density fluctuations for turbulence and MHD research. The locked mode (LM), especially the 2/1 LM, is one of the biggest threats to the plasma operation. Both the thresholds of 2/1 and 3/1 LM are observed to vary non-monotonically on electron density. The electrode biasing was applied successfully to unlock the LM from either a rotating or static resonant magnetic perturbation (RMP) field. In the presence of 2/1 LM, three kinds of standing wave (SW) structures have been observed to share a similar connection to the island structure, i.e. the nodes of the SWs locate around the O- or X-points of the 2/1 island. The control and mitigation of disruption is essential to the safe operation of ITER, and it has been systematically studied by applying a RMP field, massive gas injection (MGI) and shattered pellet injection on J-TEXT. When the RMP-induced 2/1 LM is larger than a critical width, the MGI shutdown process can be significantly influenced. If the phase difference between the O-point of LM and the MGI valve is +90° (or –90°), the penetration depth and the assimilation of impurities can be enhanced (or suppressed) during the pre-thermal quench (TQ) phase and result in a faster (or slower) TQ. A secondary MGI can also suppress the runaway electron (RE) generation, if the additional high-Z impurity gas arrives at the plasma edge before TQ. When the secondary MGI has been applied after the formation of the RE current plateau, the RE current can be dissipated, and the dissipation rate increases with the injected impurity quantity but saturates with a maximum of 28 MA s –1 . The non-local transport is experimentally observed in the ion transport channel. The electron thermal diffusivity significantly increases with the ECRH power. Theoretical work shows that significant intrinsic current can be driven by electromagnetic turbulence, and the robust formation mechanism of the E × B staircase is identified from the Hasegawa–Wakatani system.

divertor↗
DOE OSTI2021

MHD simulations of cold bubble formation from 2/1 tearing mode during massive gas injection in a tokamak

Massive gas injection (MGI) experiments have been carried out in many tokamaks to study disruption dynamics and mitigation schemes. Two events often observed in those experiments are the excitation of the m = 2, n = 1 magnetohydrodynamic mode, and the formation of cold bubble structure in the temperature distribution before the thermal quench (TQ). Here m is the poloidal mode number, n the toroidal mode number. The physics mechanisms underlying those phenomena, however, have not been entirely clear. In this work, our recent NIMROD simulations of the MGI process in a tokamak have reproduced the main features of both events, which has allowed us to examine and establish the causal relation between them. In these simulations, the 3/1 and 2/1 islands are found to form successively after the arrival of impurity ion cold front at the corresponding q = 3 and q = 2 rational surfaces. At the interface between impurity and plasma, a local thin current sheet forms due to an enhanced local pressure gradient and moves inward following the gas cold front, this may contribute to the formation of a dominant 2/1 mode. Following the growth of the 2/1 tearing mode, the impurity penetration into the core region inside the q = 2 surface gives rise to the formation of the cold bubble temperature structure and initiates the final TQ. Here, a subdominant 1/1 mode developed earlier near the q = 1 surface alone does not cause such a cold bubble formation, however, the exact manner of the preceding impurity penetration depends on the nature of the 1/1 mode: kink-tearing or quasi-interchange.

2/1 tearing mode↗
DOE OSTI2021

AlphaFold Protein Structure Database for Sequence-Independent Molecular Replacement

Crystallographic phasing recovers the phase information that is lost during a diffraction experiment. Molecular replacement is a commonly used phasing method for crystal structures in the protein data bank. In one form it uses a protein sequence to search a structure database to find suitable templates for phasing. However, sequence information is not always available, such as when proteins are crystallized with unknown binding partner proteins or when the crystal is of a contaminant. The recent development of AlphaFold published the predicted protein structures for every protein from twenty distinct species. In this work, we tested whether AlphaFold-predicted E. coli protein structures were accurate enough to enable sequence-independent phasing of diffraction data from two crystallization contaminants of unknown sequence. Using each of more than 4000 predicted structures as a search model, robust molecular replacement solutions were obtained, which allowed the identification and structure determination of YncE and YadF. Our results demonstrate the general utility of the AlphaFold-predicted structure database with respect to sequence-independent crystallographic phasing.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2014

Evaluation of Cloud-Resolving and Limited Area Model Intercomparison Simulations Using TWP-ICE Observations: Precipitation Microphysics - Part 2

Ten 3-D cloud-resolving model (CRM) simulations and four 3-D limited area model (LAM) simulations of an intense mesoscale convective system observed on 23-24 January 2006 during the Tropical Warm Pool-International Cloud Experiment (TWP-ICE) are compared with each other and with observations and retrievals from a scanning polarimetric radar, colocated UHF and VHF vertical profilers, and a Joss-Waldvogel disdrometer in an attempt to explain a low bias in simulated stratiform rainfall. Despite different forcing methodologies, similar precipitation microphysics errors appear in CRMs and LAMs with differences that depend on the details of the bulk microphysics scheme used. One-moment schemes produce too many small raindrops, which biases Doppler velocities low, but produces rainwater contents (RWCs) that are similar to observed. Two-moment rain schemes with a gamma shape parameter (mu) of 0 produce excessive size sorting, which leads to larger Doppler velocities than those produced in one-moment schemes but lower RWCs. Two-moment schemes also produce a convective median volume diameter distribution that is too broad relative to observations and, thus, may have issues balancing raindrop formation, collision-coalescence, and raindrop breakup. Assuming a mu of 2.5 rather than 0 for the raindrop size distribution improves one-moment scheme biases, and allowing mu to have values greater than 0 may improve excessive size sorting in two-moment schemes. Underpredicted stratiform rain rates are associated with underpredicted ice water contents at the melting level rather than excessive rain evaporation, in turn likely associated with convective detrainment that is too high in the troposphere and mesoscale circulations that are too weak. A limited domain size also prevents a large, well-developed stratiform region like the one observed from developing in CRMs, although LAMs also fail to produce such a region.

three dimensional models↗
NASA NTRS2013

Evaluation of Intercomparisons of Four Different Types of Model Simulating TWP-ICE

Four model intercomparisons were run and evaluated using the TWP-ICE field campaign, each involving different types of atmospheric model. Here we highlight what can be learnt from having single-column model (SCM), cloud-resolving model (CRM), global atmosphere model (GAM) and limited-area model (LAM) intercomparisons all based around the same field campaign. We also make recommendations for anyone planning further large multi-model intercomparisons to ensure they are of maximum value to the model development community. CRMs tended to match observations better than other model types, although there were exceptions such as outgoing long-wave radiation. All SCMs grew large temperature and moisture biases and performed worse than other model types for many diagnostics. The GAMs produced a delayed and significantly reduced peak in domain-average rain rate when compared to the observations. While it was shown that this was in part due to the analysis used to drive these models, the LAMs were also driven by this analysis and did not have the problem to the same extent. Based on differences between the models with parametrized convection (SCMs and GAMs) and those without (CRMs and LAMs), we speculate that that having explicit convection helps to constrain liquid water whereas the ice contents are controlled more by the representation of the microphysics.

convection↗