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Zhang, Yan

Publications and source records attributed to Zhang, Yan.

At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

Structural determinants for accurate dephosphorylation of RNA polymerase II by its cognate C-terminal domain (CTD) phosphatase during eukaryotic transcription

The C-terminal domain (CTD) of RNA polymerase II contains a repetitive heptad sequence (YSPTSPS) whose phosphorylation states coordinate eukaryotic transcription by recruiting protein regulators. The precise placement and removal of phosphate groups on specific residues of the CTD are critical for the fidelity and effectiveness of RNA polymerase II–mediated transcription. During transcriptional elongation, phosphoryl-Ser 5 (pSer 5 ) is gradually dephosphorylated by CTD phosphatases, whereas Ser 2 phosphorylation accumulates. Using MS, X-ray crystallography, protein engineering, and immunoblotting analyses, in this work we investigated the structure and function of SSU72 homolog, RNA polymerase II CTD phosphatase (Ssu72, from Drosophila melanogaster ), an essential CTD phosphatase that dephosphorylates pSer 5 at the transition from elongation to termination, to determine the mechanism by which Ssu72 distinguishes the highly similar pSer 2 and pSer 5 CTDs. We found that Ssu72 dephosphorylates pSer 5 effectively but only has low activities toward pSer 7 and pSer 2 . The structural analysis revealed that Ssu72 requires that the proline residue in the substrate's SP motif is in the cis configuration, forming a tight β-turn for recognition by Ssu72. We also noted that residues flanking the SP motif, such as the bulky Tyr 1 next to Ser 2 , prevent the formation of such configuration and enable Ssu72 to distinguish among the different SP motifs. The phosphorylation of Tyr 1 further prohibited Ssu72 binding to pSer 2 and thereby prevented untimely Ser 2 dephosphorylation. Our results reveal critical roles for Tyr 1 in differentiating the phosphorylation states of Ser 2 /Ser 5 of CTD in RNA polymerase II that occur at different stages of transcription.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Identification of the Formycin A Biosynthetic Gene Cluster from Streptomyces kaniharaensis Illustrates the Interplay between Biological Pyrazolopyrimidine Formation and de Novo Purine Biosynthesis

Formycin A is a potent purine nucleoside antibiotic with a C-glycosidic linkage between the ribosyl moiety and the pyrazolopyrimidine base. In this work, a cosmid is identified from the Streptomyces kaniharaensis genome library that contains the for gene cluster responsible for the biosynthesis of formycin. Subsequent gene deletion experiments and in vitro characterization of the forBCH gene products established their catalytic functions in formycin biosynthesis. Results also demonstrated that PurH from de novo purine biosynthesis plays a key role in pyrazolopyrimidine formation during biosynthesis of formycin A. The participation of PurH in both pathways represents a good example of how primary and secondary metabolism are interlinked.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Structural insights into the activation of metabotropic glutamate receptors

Metabotropic glutamate receptors are family C G-protein-coupled receptors. They form obligate dimers and possess extracellular ligand-binding Venus flytrap domains, which are linked by cysteine-rich domains to their 7-transmembrane domains. Spectroscopic studies show that signalling is a dynamic process, in which large-scale conformational changes underlie the transmission of signals from the extracellular Venus flytraps to the G protein-coupling domains—the 7-transmembrane domains—in the membrane. Here, using a combination of X-ray crystallography, cryo-electron microscopy and signalling studies, we present a structural framework for the activation mechanism of metabotropic glutamate receptor subtype 5. Our results show that agonist binding at the Venus flytraps leads to a compaction of the intersubunit dimer interface, thereby bringing the cysteine-rich domains into close proximity. Furthermore interactions between the cysteine-rich domains and the second extracellular loops of the receptor enable the rigid-body repositioning of the 7-transmembrane domains, which come into contact with each other to initiate signalling.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Microstructure and Mechanical Property Improvement in Laser-Welded TC4 Titanium Alloy and 301L Stainless Steel Joints Without Filler Metal

Pulsed laser welding of Ti alloy to stainless steel (SS) has been applied without filler metal. When the laser beam was focused on the Ti alloy–SS interface, large volumes of Ti-Fe intermetallics were formed in the joint. These Ti-Fe intermetallics were highly brittle, causing the joint to crack spontaneously after welding. The brittle coarse Ti-Fe intermetallics seriously deteriorates the joint strength of Ti alloy and SS; therefore, it is necessary to control the quantities and distributions of brittle Ti-Fe intermetallics in the joint. The amount of melted base materials was controlled by changing laser offset to control the melted proportion and thus control the quantity and distribution of brittle Ti-Fe intermetallics in weld. When laser beam was on the SS side, melting amount of Ti alloy in weld was decreased. When laser beam was on the Ti alloy side, melting amount of SS in weld was decreased. When the laser offset was 0.35 mm away from SS side, the sample realizes the effective connection between Ti alloy and SS. A compound layer was formed at the SS side with the main microstructure of β-Ti and TiFe{sub 2}. The joint fractured at the compound layer with the maximum tensile strength of 182 MPa. Microstructures and mechanical properties of joints were improved by changing laser offset.

36 MATERIALS SCIENCE↗
DOE OSTI2019

Water-Processable P2-Na 0.67 Ni 0.22 Cu 0.11 Mn 0.56 Ti 0.11 O 2 Cathode Material for Sodium Ion Batteries

Sodium ion batteries offer a low-cost, sustainable, and environment-friendly solution to large-scale electrochemical energy storage systems. Layered oxides represent a family of promising cathode materials with a potential to improve the energy and power densities while reducing the material cost of sodium ion batteries. However, due to the chemical and structural instability of layered oxides in an aqueous solution, the current battery electrode manufacturing requires expensive and hazardous organic solvents, which impedes the full benefit of the low-cost, sustainable, and eco-friendly advantages. We need an effective technology that empowers a cathode with water processable properties. In this study, we set a representative example, P2-Na0.67Ni0.22Cu0.11Mn0.56Ti0.11O2, to explore its performance under water-processing conditions. This material achieves a discharge capacity of 180 mAh/g and a discharge energy of 544 Wh/kg at 22 ?C. The aging experiments indicate its superior stability against water, having negligible bulk 2 structural or chemical changes. The surface sensitive soft X-ray absorption spectroscopy shows that the P2-Na0.67Ni0.22Cu0.11Mn0.56Ti0.11O2 has stable surface chemistry in the aqueous solution. Moreover, the cells with water-processed cathodes delivered stable cycling performance with minor voltage decay, originating from the decreased cell impedance. Therefore, the present study sets a refined example to establish a low-cost, sustainable, and eco-friendly solution by developing water-processable electrode materials for sodium ion batteries.

25 ENERGY STORAGE↗
DOE OSTI2018

Interleukin-7 stimulation inhibits nephrin activation and induces podocyte injury

Highlights: • IL-7R is upregulated in the glomeruli of mice with adriamycin nephropathy. • IL-7R is upregulated in adriamycin-treated podocytes in vitro. • IL-7R activation through IL-7 stimulation induces podocyte injury and impairs filtration barrier function. The glomerular podocytes control filtration barrier permeability in the kidney, and their disturbance underlies the pathogenesis of idiopathic nephrotic syndrome (INS), a kidney disease that predominantly occurs in children. In this study, we found that the interleukin-7 receptor (IL-7R) was induced in the glomeruli of adriamycin (ADR)-induced mouse nephropathy, a rodent model of nephrotic syndrome. In addition, IL-7R was also induced by ADR in mouse podocytes cultured in vitro. Functionally, we discovered that IL-7R activation through the stimulation of recombinant IL-7 induced apoptosis of podocytes, and moreover, IL-7 stimulation inhibited nephrin activation and caused actin cytoskeleton disorganization, indicating that IL-7 stimulation induces podocyte injury. Furthermore, IL-7 stimulation impaired the filtration barrier function of podocyte monolayer. Together, these results identify IL-7 and its receptor IL-7R as potential regulators of podocyte function, which might offer a novel therapeutic target in the treatment of INS.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Exosomal transfer of miR-214 mediates gefitinib resistance in non-small cell lung cancer

Highlights: • Gefitinib-resistant PC-9GR cells derived exosomes can be taken up and internalized by sensitive PC-9 cells and confer gefitinib resistance in NSCLC. • miR-214 level was upregulated in gefitinib-resistant PC-9GR cells and their derived exosomes. • miR-214 antagomir reversed gefitinib resistance conferred by geiftinib resistant PC-9GR cells-derived exosomes in vitro and in vivo. Recent studies have demonstrated that exosomal miRNAs mediate as intercellular bio-messengers of drug resistance in lung cancer. Our objective was to investigate whether exosomes derived from gefitinib resistant non-small cell lung cancer cells could confer resistance to its recipient cells. Exosomes were successfully isolated by ultracentrifugation and exosomes morphologies and sizes were determined by transmission electron microscopy and dynamic light scattering analysis. Fluorescent PKH-67 labeled exosomes derived from PC-9GR cells could be taken up and internalized by PC-9 cells. CCK8 measurement showed that PC-9GR-derived exosomes could confer gefitinib resistance in PC-9 cells. MiRNA-214 was upregulated in gefitinib resistant PC-9GR cells and its derived exosomes by qPCR analysis. Inhibition of exosomal miR-214 with antagomir reversed gefitinib resistance conferred by PC-9GR-derived exosomes in vitro, which was confirmed by flow cytometry analysis and westernblot of apoptotic protein (caspase-3, caspase-3 cleaved, bax) and anti-apoptotic protein (bcl-2). Finally, exosomes enriched with miR-214 antagomir was further confirmed to reverse gefitinib resistance in vivo. Our results are the first to show that exosomes derived from gefitinib-resistant PC-9GR cells could transfer resistance to its recipient sensitive PC-9 cells, which might be mediated by exosomal transfer of miR-214.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

FAT10 promotes the invasion and migration of breast cancer cell through stabilization of ZEB2

Highlights: • High FAT10 level was closely associated with the malignant phenotype and shorter survival in the BC patients. • FAT10 knockdown suppressed the metastasis abilities and the EMT of breast cancer cell. • FAT10 directly interacts with ZEB2 and stabilizes its expression in breast cancer cells. • The pro-metastasis role of FAT10 in breast cancer is dependent on ZEB2 enhancement. FAT10, an ubiquitin-like protein, functions as a potential tumor promoter in several caners. However, the function and clinical significance of FAT10 in breast cancer (BC) remains unclear. Here, we found that high FAT10 expression was detected frequently in primary BC tissues, and was closely associated with malignant phenotype and shorter survival among the BC patients. Multivariate analyses also revealed that FAT10 overexpression was independent prognostic factors for poor outcome of patients with BC. Function assay demonstrated that FAT10 knockdown significantly inhibited the metastasis abilities and the epithelial-mesenchymal transition (EMT) of breast cancer cell. Further investigation revealed that FAT10 directly bound ZEB2 and decreased its ubiquitination to enhance the protein stability of ZEB2 in BC cells. Moreover, our data shown that the pro-metastasis effect of FAT10 in BC is partially dependent on ZEB2 enhancement. Collectively, our data suggest that FAT10 plays a crucial oncogenic role in BC metastasis, and we provide a novel evidence that FAT10 may be serve as a prognostic and therapeutic target for BC patients.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Selective nitrogen doping of graphene oxide by laser irradiation for enhanced hydrogen evolution activity

Selective nitrogen-doping of graphene oxide with a high pyridinic N ratio (51%; L-GO) was achieved here by laser irradiation of graphene oxide with ammonia. The resulting L-GO exhibited enhanced electrocatalytic properties; specifically, the overpotential of the hydrogen evolution reaction (HER) was improved by over 400 mV at 10 mA cm -2 compared to the pristine graphene oxide.

36 MATERIALS SCIENCE↗
DOE OSTI2018

Deciphering the Cathode-Electrolyte Interfacial Chemistry in Sodium Layered Cathode Materials

The ever–increasing demand for stationary energy storage has driven the prosperous investigation of low–cost sodium ion batteries. The inferior long–term cycling stability of cathode materials is a significant roadblock toward the wide commercialization of sodium ion batteries. This study enlightens a path toward empowering stable sodium ion batteries through incisive diagnostics of the multiscale surface chemical processes in layered oxide materials (e.g., O3–NaNi 1/3 Fe 1/3 Mn 1/3 O 2 ). The major challenges are unraveled in a promising sodium layered cathode material using a range of complementary advanced spectroscopic and imaging diagnostic techniques. It is discovered that the cathode–electrolyte interfacial reaction triggers transition metal reduction, heterogeneous surface reconstruction, metal dissolution, and formation of intragranular nanocracks. These surface chemistry driven processes are partly responsible for significant performance decay. This diagnostic study also rationalizes the elemental substitution and surface passivation methods that are widely applied in the field. The prepassivated and Ti–substituted cathode materials allow for significantly improved cycling stability by inhibiting the metal dissolution. Furthermore, incisively diagnosing the interfacial chemistry not only creates scientific insights into understanding sodium cathode chemistry, but also represents an advance toward establishing universal interfacial design principles for all alkali metal ion cathode materials.

25 ENERGY STORAGE↗
DOE OSTI2018

Thermally driven mesoscale chemomechanical interplay in Li 0.5 Ni 0.6 Mn 0.2 Co 0.2 O 2 cathode materials

While Li ion batteries are intended to be operated within a mild temperature window, their structural and chemical complexity could lead to unanticipated local electrochemical events that could cause extreme temperature spikes, which, in turn, could trigger more undesired and sophisticated reactions in the system. Visualizing and understanding the response of battery electrode materials to thermal abuse conditions could potentially offer a knowledge basis for the prevention and mitigation of the safety hazards. Here we show a comprehensive investigation of thermally driven chemomechanical interplay in a Li 0.5 Ni 0.6 Mn 0.2 Co 0.2 O 2 (charged NMC622) cathode material. We report that, at the early stage of the thermal abuse, oxygen release and internal Li migration occur concurrently, and are accompanied by mechanical disintegration at the mesoscale. At the later stage, Li protrusions are observed on the secondary particle surface due to the limited lithium solubility in non-layered lattices. As a result, the extraction of both oxygen and lithium from the host material at elevated temperature could influence the chemistry and safety at the cell level via rearrangement of the electron and ion diffusion pathways, reduction of the coulombic efficiency, and/or causing an internal short circuit that could provoke a thermal runaway.

25 ENERGY STORAGE↗
DOE OSTI2018

PPARγ provides anti-inflammatory and protective effects in intrahepatic cholestasis of pregnancy through NF-κB pathway

Intrahepatic cholestasis of pregnancy (ICP) is a pregnancy-specific hepatic disorder with potentially deleterious consequences of fetuses. Although the intimate relationship between ICP and peroxisome proliferator-activated receptor γ (PPARγ) has been previously reported in physiological and pathological conditions, the detailed mechanisms in the process of intrahepatic cholestasis of pregnancy has been unclear. The aims of this study are to assess the role of PPARγ regulating the reactive oxygen species (ROS) and inflammation in the process of the ICP.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Long non-coding RNA OGFRP1 regulates LYPD3 expression by sponging miR-124-3p and promotes non-small cell lung cancer progression

Highlights: • The expression levels of lncRNA OGFRP1 was up-regulated in NSCLC tissues and cell lines. • Overexpression of lncRNA OGFRP1 was associated with advanced clinical features and poor prognosis in NSCLC patients. • LncRNA OGFRP1 promoted NSCLC cells proliferation, migration and invasion by regulation of miR-124-3p-LYPD3 pathway. Long noncoding RNA (OGFRP1) has been reported to be involved in the progression of non-small cell lung cancer (NSCLC). However, the expression pattern, functions and molecular mechanisms of OGFRP1 in NSCLC remains unclear. In the present study, we found that OGFRP1 expression was significantly up-regulated in both NSCLC tissues and cell lines, and the upregulation of OGFRP1 expression is a powerful predictor of advanced clinical stage, lymph nodes metastasis and poor prognosis for NSCLC patients. Loss-of-function assay indicated that knockdown of OGFRP1 inhibited proliferation, migration and invasion, and induced apoptosis in vitro. Mechanistically, OGFRP1 could directly bind to miR-124-3p and effectively act as a competing endogenous RNA (ceRNA) for miR-124-3p to promote the expression of the target gene LYPD3. Taken together, OGFRP1 contributed to progression of NSCLC at least partly through upregulating LYPD3 expression by sponging miR-124-3p, indicating that OGFRP1 may be a novel prognostic biomarker and therapeutic target in NSCLC.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Structure and Conformational Dynamics of a COMPASS Histone H3K4 Methyltransferase Complex

The methylation of histone 3 lysine 4 (H3K4) is carried out by an evolutionarily conserved family of methyltransferases referred to as complex of proteins associated with Set1 (COMPASS). The activity of the catalytic SET domain (su(var)3-9, enhancer-of-zeste, and trithorax) is endowed through forming a complex with a set of core proteins that are widely shared from yeast to humans. We obtained cryo-electron microscopy (cryo-EM) maps of the yeast Set1/COMPASS core complex at overall 4.0- to 4.4-Å resolution, providing insights into its structural organization and conformational dynamics. The Cps50 C-terminal tail weaves within the complex to provide a central scaffold for assembly. The SET domain, snugly positioned at the junction of the Y-shaped complex, is extensively contacted by Cps60 (Bre2), Cps50 (Swd1), and Cps30 (Swd3). Here, the mobile SET-I motif of the SET domain is engaged by Cps30, explaining its key role in COMPAS catalytic activity toward higher H3K4 methylation states.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Influence of dopant size and electron affinity on the electrical conductivity and thermoelectric properties of a series of conjugated polymers

Here, chemical doping is widely used to manipulate the electrical and thermoelectric properties of organic semiconductors, yet intelligent design of polymer–dopant systems remains elusive. It is challenging to predict the electrical and thermoelectric properties of doped organic semiconductors due to the large number of variables impacting these properties, including film morphology, dopant and polymer energetics, dopant size, and degree of polaron delocalization. Herein, a series of dopants with varying sizes and electron affinities (EAs) are combined with polymers of differing ionization energies (IEs) to investigate how the difference between polymer IE and dopant EA influences the doping efficiency and electrical conductivity, and how the dopant size influences the thermoelectric properties. Our experiments demonstrate that at low doping levels the doping efficiency strongly depends on the difference between the polymer IE and dopant EA; the effectiveness of doping on increasing electrical conductivity drastically decreases at high loadings for the molybdenum dithiolene complexes, while FeCl 3 remains effective at high loadings; and the large molybdenum complexes lead to more delocalized polarons as compared to FeCl 3 . To take advantage of the complementary doping characteristics of the molybdenum complexes and FeCl 3 , both dopants are employed simultaneously to reach high power factors at relatively low dopant concentrations.

36 MATERIALS SCIENCE↗