Structures of netrin-1 bound to two receptors provide insight into its axon guidance mechanism
Abstract not provided
Xu, Kai↗
Engineering topics
Xu, Yan
Publications and source records attributed to Xu, Yan.
Comparison of emission properties of two homologous flares in AR 11283
Large, complex, active regions may produce multiple flares within a certain period of one or two days. These flares could occur in the same location with similar morphologies, commonly referred to as 'homologous flares'. In 2011 September, active region NOAA 11283 produced a pair of homologous flares on the 6th and 7th, respectively. Both of them were white-light (WL) flares, as captured by the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamics Observatory in visible continuum at 6173 Å which is believed to originate from the deep solar atmosphere. We investigate the WL emission of these X-class flares with HMI's seeing-free imaging spectroscopy. The durations of impulsive peaks in the continuum are about 4 minutes. We compare the WL with hard X-ray (HXR) observations for the September 6 flare and find a good correlation between the continuum and HXR both spatially and temporally. In absence of RHESSI data during the second flare on September 7, the derivative of the GOES soft X-ray is used and also found to be well correlated temporally with the continuum. We measure the contrast enhancements, characteristic sizes, and HXR fluxes of the twin flares, which are similar for both flares, indicating analogous triggering and heating processes. However, the September 7 flare was associated with conspicuous sunquake signals whereas no seismic wave was detected during the flare on September 6. Therefore, this comparison suggests that the particle bombardment may not play a dominant role in producing the sunquake events studied in this paper.
79 ASTRONOMY AND ASTROPHYSICS↗
EVOLUTION OF A MAGNETIC FLUX ROPE AND ITS OVERLYING ARCADE BASED ON NONLINEAR FORCE-FREE FIELD EXTRAPOLATIONS
Dynamic phenomena indicative of slipping reconnection and magnetic implosion were found in a time series of nonlinear force-free field (NLFFF) extrapolations for the active region 11515, which underwent significant changes in the photospheric fields and produced five C-class flares and one M-class flare over five hours on 2012 July 2. NLFFF extrapolation was performed for the uninterrupted 5 hour period from the 12 minute cadence vector magnetograms of the Helioseismic and Magnetic Imager on board the Solar Dynamic Observatory. According to the time-dependent NLFFF model, there was an elongated, highly sheared magnetic flux rope structure that aligns well with an Hα filament. This long filament splits sideways into two shorter segments, which further separate from each other over time at a speed of 1-4 km s{sup –1}, much faster than that of the footpoint motion of the magnetic field. During the separation, the magnetic arcade arching over the initial flux rope significantly decreases in height from ∼4.5 Mm to less than 0.5 Mm. We discuss the reality of this modeled magnetic restructuring by relating it to the observations of the magnetic cancellation, flares, a filament eruption, a penumbra formation, and magnetic flows around the magnetic polarity inversion line.
79 ASTRONOMY AND ASTROPHYSICS↗
STUDY OF TWO SUCCESSIVE THREE-RIBBON SOLAR FLARES ON 2012 JULY 6
This Letter reports two rarely observed three-ribbon flares (M1.9 and C9.2) on 2012 July 6 in NOAA AR 11515, which we found using Hα observations of 0.''1 resolution from the New Solar Telescope and Ca II H images from Hinode. The flaring site is characterized by an intriguing ''fish-bone-like'' morphology evidenced by both Hα images and a nonlinear force-free field (NLFFF) extrapolation, where two semi-parallel rows of low-lying, sheared loops connect an elongated, parasitic negative field with the sandwiching positive fields. The NLFFF model also shows that the two rows of loops are asymmetric in height and have opposite twists, and are enveloped by large-scale field lines including open fields. The two flares occurred in succession within half an hour and are located at the two ends of the flaring region. The three ribbons of each flare run parallel to the magnetic polarity inversion line, with the outer two lying in the positive field and the central one in the negative field. Both flares show surge-like flows in Hα apparently toward the remote region, while the C9.2 flare is also accompanied by EUV jets possibly along the open field lines. Interestingly, the 12-25 keV hard X-ray sources of the C9.2 flare first line up with the central ribbon then shift to concentrate on the top of the higher branch of loops. These results are discussed in favor of reconnection along the coronal null line, producing the three flare ribbons and the associated ejections.
79 ASTRONOMY AND ASTROPHYSICS↗
Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain NZP2037
Mesorhizobium loti strain NZP2037 was isolated in 1961 in Palmerston North, New Zealand from a Lotus divaricatus root nodule. Compared to most other M. loti strains, it has a broad host range and is one of very few M. loti strains able to form effective nodules on the agriculturally important legume Lotus pedunculatus. NZP2037 is an aerobic, Gram negative, non-spore-forming rod. This report reveals that the genome of M. loti strain NZP2037 does not harbor any plasmids and contains a single scaffold of size 7,462,792 bp which encodes 7,318 protein-coding genes and 70 RNA-only encoding genes. This rhizobial genome is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.
59 BASIC BIOLOGICAL SCIENCES↗
A New Linearization Method of Unbalanced Electrical Distribution Networks
Abstract--- With increasing penetration of distributed generation in the distribution networks (DN), the secure and optimal operation of DN has become an important concern. As DN control and operation strategies are mostly based on the linearized sensitivity coefficients between controlled variables (e.g., node voltages, line currents, power loss) and control variables (e.g., power injections, transformer tap positions), efficient and precise calculation of these sensitivity coefficients, i.e. linearization of DN, is of fundamental importance. In this paper, the derivation of the node voltages and power loss as functions of the nodal power injections and transformers' tap-changers positions is presented, and then solved by a Gauss-Seidel method. Compared to other approaches presented in the literature, the proposed method takes into account different load characteristics (e.g., constant PQ, constant impedance, constant current and any combination of above) of a generic multi-phase unbalanced DN and improves the accuracy of linearization. Numerical simulations on both IEEE 13 and 34 nodes test feeders show the efficiency and accuracy of the proposed method.
linearization↗
Distribution System Voltage Regulation by Distributed Energy Resources
This paper proposes a control method to regulate voltages in 3 phase unbalanced electrical distribution systems. A constrained optimization problem to minimize voltage deviations and maximize distributed energy resource (DER) active power output is solved by harmony search algorithm. IEEE 13 Bus Distribution Test System was modified to test three different cases: a) only voltage regulator controlled system b) only DER controlled system and c) both voltage regulator and DER controlled system. The simulation results show that systems with both voltage regulators and DER control provide better voltage profile.
Distributed energy resources↗
Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production
Enterobacter sp. IIT-BT 08 belongs to Phylum: Proteobacteria, Class: Gammaproteobacteria, Order: Enterobacteriales, Family: Enterobacteriaceae. The organism was isolated from the leaves of a local plant near the Kharagpur railway station, Kharagpur, West Bengal, India. It has been extensively studied for fermentative hydrogen production because of its high hydrogen yield. For further enhancement of hydrogen production by strain development, complete genome sequence analysis was carried out. Sequence analysis revealed that the genome was linear, 4.67 Mbp long and had a GC content of 56.01%. The genome properties encode 4,393 protein-coding and 179 RNA genes. Additionally, a putative pathway of hydrogen production was suggested based on the presence of formate hydrogen lyase complex and other related genes identified in the genome. Thus, in the present study we describe the specific properties of the organism and the generation, annotation and analysis of its genome sequence as well as discuss the putative pathway of hydrogen production by this organism.
59 BASIC BIOLOGICAL SCIENCES↗
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943.
Rhizobium leguminosarum bv. trifolii SRDI943 (strain syn. V2-2) is an aerobic, motile, Gramnegative, non-spore-forming rod that was isolated from a root nodule of Trifolium michelianum Savi cv. Paradana that had been grown in soil collected from a mixed pasture in Victoria, Australia. This isolate was found to have a broad clover host range but was sub-optimal for nitrogen fixation with T. subterraneum (fixing 20-54% of reference inoculant strain WSM1325) and was found to be totally ineffective with the clover species T. polymorphum and T. pratense. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI943, together with genome sequence information and annotation. The 7,412,387 bp high-quality-draft genome is arranged into 5 scaffolds of 5 contigs, contains 7,317 protein-coding genes and 89 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.
59 BASIC BIOLOGICAL SCIENCES↗
Draft Genome Sequence and Description of Janthinobacterium sp. Strain CG3, a Psychrotolerant Antarctic Supraglacial Stream Bacterium
Here we present the draft genome sequence of Janthinobacterium sp. strain CG3, a psychrotolerant non-violacein-producing bacterium that was isolated from the Cotton Glacier supraglacial stream. The genome sequence of this organism will provide insight as to the mechanisms necessary for bacteria to survive in UV-stressed icy environments.
59 BASIC BIOLOGICAL SCIENCES↗
Crystal Structure of the Hendra Virus Attachment G Glycoprotein Bound to a Potent Cross-Reactive Neu
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Xu, Kai↗
Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4
Serratia proteamaculans S4 (previously Serratia sp. S4), isolated from the rhizosphere of wild Equisetum sp., has the ability to stimulate plant growth and to suppress the growth of several soil-borne fungal pathogens of economically important crops. Here we present the noncontiguous, finished genome sequence of S. proteamaculans S4, which consists of a 5,324,944 bp circular chromosome and a 129,797 bp circular plasmid. The chromosome contains 5,008 predicted genes while the plasmid comprises 134 predicted genes. In total, 4,993 genes are assigned as protein-coding genes. The genome consists of 22 rRNA genes, 82 tRNA genes and 58 pseudogenes. This genome is a part of the project “Genomics of four rapeseed plant growth-promoting bacteria with antagonistic effect on plant pathogens” awarded through the 2010 DOE-JGI’s Community Sequencing Program.
59 BASIC BIOLOGICAL SCIENCES↗
Direct synthesis of Al-SBA-15 containing aluminosilicate species plugs in an acid-free medium and structural adjustment by hydrothermal post-treatment
A series of Al-SBA-15 with controllable aluminosilicate plug structures inside straight mesopores has been hydrothermally synthesized in a one-step synthesis in an environmentally friendly acid-free medium, using triblock copolymer Pluronic P123 as a structure-directing agent, water as solvent, tetraethyl orthosilicate (TEOS) and aluminum nitrate (Al(NO){sub 3}·9H{sub 2}O) as silica and aluminum sources, respectively. The effects of the P123/Si molar ratio in the initial solution and aging temperature on the structural properties of the resulting materials were investigated by powder X-ray diffraction (XRD), nitrogen adsorption–desorption at 77 K, transmission electron microscopy (TEM), scanning electron microscopy (SEM), thermogravimetric (TG), FT-IR spectra and inductively coupled plasma (ICP) analyses. The nature of the Al species and the acidity of the resultant samples were studied by solid state {sup 27}Al MAS NMR and pyridine adsorption measurements. The specific surface area (935–755 m{sup 2}g{sup −1}), pore volume (1.03–0.56 cm{sup 3}g{sup −1}) and especially the concentration and distribution of open type mesopores (0–68% to the total pores) of the synthesized Al-SBA-15 can be controlled by a simple adjustment of the P123/Si molar ratio in the initial solution. Moreover, increasing the aging temperature higher than 363 K can remarkably decrease the formation of plug structures to obtain “open” form mesopores. The observation by TEM of alternate defined gray and white areas inside the mesopores gives the strong evidence of isolated microporous aluminosilicate plugs inside the channels. In addition, a moderate hydrothermal post-treatment can finely modify the mesostructures through the partial or complete dissolution of the aluminosilicate plugs. - Graphical abstract: The plugs-containing structures can be interpreted as the distribution of individual isolated plugs along the mesoporous channel. - Highlights: • Al-SBA-15 with controllable plug structures was synthesized in an acid-free medium. • Its structural properties can be finely modified through moderate hydrothermal post-treatment. • TEM analysis gave the direct evidence of isolated aluminosilicate plugs inside the channels.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Draft Genome Sequence of Methylomicrobium buryatense Strain 5G, a Haloalkaline-Tolerant Methanotrophic Bacterium
Robust growth of the gammaproteobacterium Methylomicrobium buryatense strain 5G on methane makes it an attractive system for CH 4 -based biocatalysis. Here we present a draft genome sequence of the strain that will provide a valuable framework for metabolic engineering of the core pathways for the production of valuable chemicals from methane.
59 BASIC BIOLOGICAL SCIENCES↗
High-cadence and high-resolution Hα imaging spectroscopy of a circular flare's remote ribbon with IBIS
We present an unprecedented high-resolution Hα imaging spectroscopic observation of a C4.1 flare taken with the Interferometric Bidimensional Spectrometer (IBIS) in conjunction with the adaptive optics system at the 76 cm Dunn Solar Telescope on 2011 October 22 in the active region NOAA 11324. Such a two-dimensional spectroscopic observation covering the entire evolution of a flare ribbon with high spatial (0.''1 pixel{sup –1} image scale), cadence (4.8 s), and spectral (0.1 Å step size) resolution is rarely reported. The flare consists of a main circular ribbon that occurred in a parasitic magnetic configuration and a remote ribbon that was observed by the IBIS. Such a circular-ribbon flare with a remote brightening is predicted in three-dimensional fan-spine reconnection but so far has been rarely studied. During the flare impulsive phase, we define 'core' and 'halo' structures in the observed ribbon based on IBIS narrowband images in the Hα line wing and line center. Examining the Hα emission spectra averaged in the flare core and halo areas, we find that only those from the flare cores show typical nonthermal electron beam heating characteristics that have been revealed by previous theoretical simulations and observations of flaring Hα line profiles. These characteristics include broad and centrally reversed emission spectra, excess emission in the red wing with regard to the blue wing (i.e., red asymmetry), and redshifted bisectors of the emission spectra. We also observe rather quick timescales for the heating (∼30 s) and cooling (∼14-33 s) in the flare core locations. Therefore, we suggest that the flare cores revealed by IBIS track the sites of electron beam precipitation with exceptional spatial and temporal resolution. The flare cores show two-stage motion (a parallel motion along the ribbon followed by an expansion motion perpendicular to the ribbon) during the two impulsive phases of the flare. Some cores jump quickly (30 km s{sup –1}) between discrete magnetic elements implying reconnection involving different flux tubes. We observe a very high temporal correlation (≳ 0.9) between the integrated Hα and hard X-rays (HXR) emission during the flare impulsive phase. A short time delay (4.6 s) is also found in the Hα emission spikes relative to HXR bursts. The ionization timescale of the cool chromosphere and the extra time taken for the electrons to travel to the remote ribbon site may contribute to this delay.
79 ASTRONOMY AND ASTROPHYSICS↗
Wireless Communication for Controlling Microgrids: Co-simulation and Performance Evaluation
A microgrid with wireless communication links for microgrid control has been designed and developed. The complete simulation model has been developed in MatLab SimuLink with seamless integration of the power subsystem and the communication subsystem. Unlike the conventional co-simulators that usually glue two existing simulators together by creating an interface, which has a steep learning curve, the proposed simulator is a compact single-unit model. Detailed modeling of the power subsystem and communication system is presented as well as the microgrid control architecture and strategies. The impact of different communication system performances on microgrid control has been studied and evaluated in the proposed simulator.
Mao, Rukun↗