Engineering topics

Xu, Dong

Publications and source records attributed to Xu, Dong.

At least 19 records

DOE OSTI2026

HOLISMOKES XIX

We present imaging and spectroscopic observations of supernova SN 2025wny, associated with the lens candidate PS1 J0716+3821. Photometric monitoring from the Lulin and Maidanak observatories confirms multiple point-like images, consistent with SN 2025wny being strongly lensed by two foreground galaxies. Optical spectroscopy of the brightest image with the Nordic Optical Telescope and the University of Hawaii 88-inch Telescope allowed us to determine the redshift to be z SN = 2.008 ± 0.001, based on narrow absorption lines originating in the interstellar medium of the supernova host galaxy. At this redshift, SN 2025wny shows a very high rest-frame UV flux and broad spectral features even weeks after the explosion, which is consistent with superluminous supernovae of Type I. We find a high ejecta temperature and depressed spectral lines compared to other similar objects. We also measured, for the first time, the redshift of the fainter of the two lens galaxies (the ‘perturber’) to be z p = 0.375 ± 0.001, which is fully consistent with the DESI spectroscopic redshift of the main deflector at z d = 0.3754. Thus, SN 2025wny represents the first confirmed galaxy-scale strongly lensed supernova with time delays likely in the range of days to weeks, as judged from the image separations. This makes SN 2025wny suitable for cosmography, offering a promising new system for independent measurements of the Hubble constant. Following a tradition in the field of strongly lensed supernovae, we give SN 2025wny the nickname SN Winny.

Taubenberger, Stefan↗

DOE OSTI2024

Evolution of the regulatory subunits for the heteromeric acetyl-CoA carboxylase

The committed step for de novo fatty acid (FA) synthesis is the ATP-dependent carboxylation of acetyl-coenzyme A catalysed by acetyl-CoA carboxylase (ACCase). In most plants, ACCase is a multi-subunit complex orthologous to prokaryotes. However, unlike prokaryotes, the plant and algal orthologues are comprised both catalytic and additional dedicated regulatory subunits. Novel regulatory subunits, biotin lipoyl attachment domain-containing proteins (BADC) and carboxyltransferase interactors (CTI) (both three-gene families inArabidopsis) represent new effectors specific to plants and certain algal species. The evolutionary history of these genes in autotrophic eukaryotes remains elusive, making it an ongoing area of research. Analyses of potential protein–protein and co-occurrence interactions, informed by gene network patterns using the STRING database, inArabidopsis thalianaandChlamydomonas reinhardtiiunveil intricate gene associations with ACCase, suggesting a complex interplay between FA synthesis and other cellular processes. Among both species, a higher number of co-expressed genes was identified inArabidopsis, indicating a wider potential regulatory network of ACCase in plants. This review investigates the extent to which these genes arose in autotrophic eukaryotes and provides insights into their evolutionary trajectory. This article is part of the theme issue ‘The evolution of plant metabolism’.

Life Sciences & Biomedicine - Other Topics↗

DOE OSTI2024

CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal

In recent years, there has been a growing interest in profiling multiomic modalities within individual cells simultaneously. One such example is integrating combined single-cell RNA sequencing (scRNA-seq) data and single-cell transposase-accessible chromatin sequencing (scATAC-seq) data. Integrated analysis of diverse modalities has helped researchers make more accurate predictions and gain a more comprehensive understanding than with single-modality analysis. However, generating such multimodal data is technically challenging and expensive, leading to limited availability of single-cell co-assay data. Here, we propose a model for cross-modal prediction between the transcriptome and chromatin profiles in single cells. Our model is based on a deep neural network architecture that learns the latent representations from the source modality and then predicts the target modality. It demonstrates reliable performance in accurately translating between these modalities across multiple paired human scATAC-seq and scRNA-seq datasets. Additionally, we developed CrossMP, a web-based portal allowing researchers to upload their single-cell modality data through an interactive web interface and predict the other type of modality data, using high-performance computing resources plugged at the backend.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023