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Wunschel, David S

Publications and source records attributed to Wunschel, David S.

Integration of Gas Chromatography Mass Spectrometry Methods for Differentiating Ricin Preparation Methods

The investigation of crimes involving chemical or biological agents is infrequent, but presents unique analytical challenges. The protein toxin ricin is encountered more frequently than other agents and is found in the seeds of the castor plant Ricinus communis. Typically, the toxin is extracted from castor seeds utilizing a variety of different recipes that result in varying purity of the toxin. Moreover, these various purification steps can also leave or differentially remove a variety of exogenous and endogenous residual components with the toxin that may indicate the type and number of purification steps involved. We have applied three gas chromatographic - mass spectrometric (GC-MS) based analytical methods to measure the variation in seed carbohydrates and castor oil ricinoleic acid as well as the presence of solvents used for purification. These methods were applied to the same samples prepared using four previously identified toxin preparation methods starting from four varieties of castor seeds. The individual data sets for seed carbohydrate profiles, ricinoleic acid or acetone amount each provided information capable of differentiating different types of toxin preparations across seed types. However, the integration of the data sets using multivariate factor analysis provided a clear distinction of all samples based on the preparation method and independent of the seed source. In particular the abundance of mannose, arabinose, fucose, ricinoleic acid and acetone were shown to be important differentiating factors. These complementary tools provide a more confident determination of the method of toxin preparation.

59 BASIC BIOLOGICAL SCIENCES↗

Carbohydrate markers of organism purity and growth environment

Recent experience with Bacillus spore characterization has demonstrated that carbohydrate content can provide potentially vital bioforensic information. Like other metabolites, the carbohydrate profiles of samples reflect variations in cellular structures as well as presence of residual carbohydrates from the medium found as trace components. The presence and characteristics of residual carbohydrates, such as agar, represent strong indicators of culturing method. The methods to detect residual carbohydrates can be extended to other compounds used in processing and preservation of microbes in a dry form.

Agar↗

Glycoprotein and protein markers for strain differentiation and growth environment or media attribution

Recent experience with Bacillus spore characterization has demonstrated that protein markers can provide potentially vital identifying and bioforensic information. The masses of constitutively expressed proteins and their peptide fragments can be used to identify bacterial isolates. Protein marker mass variation information reflects the underlying amino acid sequence variation to provide complementary information to genetic sequence analysis. Protein markers (identified by mass or sequence) that are conserved or variable can be readily selected. In contrast, genetic primers, as used in PCR, target conserved genetic regions. Furthermore, protein markers are relatively stable compared to nucleic acids and may remain in samples for longer periods of time. This is important to consider when the source, age and condition of samples may vary in a forensic investigation. Examples of constitutively expressed proteins that have been extensively characterized include the exosporium BclA and BclB proteins and small acid soluble proteins (SASPs). Finally, gene expression (usually assessed at the mRNA level) can vary in response to different environmental conditions. As a result, the profile of protein markers of the organism also reflects the culture environment. Mass spectrometric tools can be used to access the same information on culture-related protein expression variation. However, unlike genetic methods, with proteomic methodology there is the potential to define exactly which medium was employed for organism growth. This potential could provide additional clues for forensic attribution

Bacillus anthracis↗

Determination of Post-Culture Processing with Carbohydrates by MALDI-MS and TMS derivatization GC/MS.

Biological materials generally require stabilization to retain activity or viability in a dry form. A number of industrial products, such as vaccines, probiotics and biopesticides, have been produced as dry preparations. The same methods and materials used for stabilizing commercial microbial products may be applicable to preserving biothreat pathogens in a dry form.

59 BASIC BIOLOGICAL SCIENCES↗

The Effect of Growth Medium on B. anthracis Sterne Spore Carbohydrate Content

The expressed characteristics of biothreat agents may be impacted by variations in the culture environment, including growth medium formulation. The carbohydrate composition of B. anthracis spores has been well studied, particularly for the exosporium, which is the outermost spore structure. The carbohydrate composition of the exosporium has been demonstrated to be distinct from the vegetative form containing unique monosaccharides.

59 BASIC BIOLOGICAL SCIENCES↗

Proteomics Development and Application for Bioforensics

Proteomics is a relatively new scientific discipline dedicated to the comprehensive study of the protein composition of biological systems. While genomic sequencing is an invaluable tool for bioforensic sample identification, proteomics complements genomics in that the genes present in an organism code for the proteins that can be present in a microorganism. Many proteins are conserved for general identification while other protein expression varies with environment/growth state/growth conditions (i.e. not all proteins are expressed at any given time or condition) providing additional information beyond genomic analysis. This expression specificity and the relative stability of proteins with respect to genetic material make them attractive targets for microorganism identification and forensic applications to complement genomic approaches. Proteomic analysis depends upon the availability of genome sequences of the relevant organisms or their near relatives. The known amino acid sequences for potential proteins within the database can be compared to amino acid sequences of actual proteins present in a sample as determined with high mass accuracy by mass spectrometry for identification of the proteins in the sample. With the development of technology for rapid genome sequencing of organisms, the known protein database is growing, supporting improved identification of the proteins present in a sample. Recent developments in mass spectrometry instrumentation and microbial sequencing are leading to an increased growth in application of proteomics to microbiology, pathogen detection, disease diagnosis and microbial forensics as well as other biological disciplines. Mass spectrometry analysis does not require a priori knowledge of the sample or expected targets to gain meaningful.

59 BASIC BIOLOGICAL SCIENCES↗