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Whitman, Thea

Publications and source records attributed to Whitman, Thea.

1,504 records · Page 84
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DOE OSTI2022

Reimagine fire science for the anthropocene

Fire is an integral component of ecosystems globally and a tool that humans have harnessed for millennia. Altered fire regimes are a fundamental cause and consequence of global change, impacting people and the biophysical systems on which they depend. As part of the newly emerging Anthropocene, marked by human-caused climate change and radical changes to ecosystems, fire danger is increasing, and fires are having increasingly devastating impacts on human health, infrastructure, and ecosystem services. Increasing fire danger is a vexing problem that requires deep transdisciplinary, trans-sector, and inclusive partnerships to address. Here, we outline barriers and opportunities in the next generation of fire science and provide guidance for investment in future research. We synthesize insights needed to better address the long-standing challenges of innovation across disciplines to (i) promote coordinated research efforts; (ii) embrace different ways of knowing and knowledge generation; (iii) promote exploration of fundamental science; (iv) capitalize on the “firehose” of data for societal benefit; and (v) integrate human and natural systems into models across multiple scales. Fire science is thus at a critical transitional moment. We need to shift from observation and modeled representations of varying components of climate, people, vegetation, and fire to more integrative and predictive approaches that support pathways toward mitigating and adapting to our increasingly flammable world, including the utilization of fire for human safety and benefit. Only through overcoming institutional silos and accessing knowledge across diverse communities can we effectively undertake research that improves outcomes in our more fiery future.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Resilience in soil bacterial communities of the boreal forest from one to five years after wildfire across a severity gradient

Wildfires can represent a major disturbance to ecosystems, including soil microbial communities belowground. Furthermore, fire regimes are changing in many parts of the world, altering and often increasing fire severity, frequency, and size. The boreal forest and taiga plains ecoregions of northern Canada are characterized by naturally-occurring stand-replacing wildfires on a 40–350 year basis. We previously studied the effects of wildfire on soil microbial communities one year post-fire across 40 sites, spanning a range of burn severity. Here, we return to the same sites five years post-fire to test a series of hypotheses about the effects of fire on bacterial community composition. We ask questions on two themes: which factors control bacterial community composition during post-fire recovery, and how does the importance of different fire-responsive traits change during post-fire recovery? We find the following: Five years post-fire, vegetation community, moisture regime, pH, total carbon, texture, and burned/unburned all remained significant predictors of bacterial community composition with similar predictive value (R 2 ). Bacterial communities became more similar to unburned sites five years post-fire, across the range of severity, suggesting resilience, while general structure of co-occurrence networks remained similar one and five years post-fire. Fast growth potential, as estimated using predicted 16S rRNA copy numbers, was no longer significantly correlated with burn severity five years post-fire, indicating the importance of this trait for structuring bacterial community composition may be limited to relatively short timescales. Many taxa that were enriched in burned sites one year post-fire remained enriched five years post-fire, although the degree to which they were enriched generally decreased. Specific taxa of interest from the genera Massilia, Blastococcus, and Arthrobacter all remained significantly enriched, suggesting that they may have traits that allow them to continue to flourish in the post-fire environment, such as tolerance to increased pH or ability to degrade pyrogenic organic matter. This hypothesis-based work expands our understanding of the post-fire recovery of soil bacterial communities and raises new hypotheses to test in future studies.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Impact of burning on soil properties and respiration; Wood Buffalo National Park, Canada; June 2019

In this study, we used burn simulations on boreal forest soil under high and low moisture conditions to investigate the effect of burning on soil temperature, soil properties such as pH, total C and total C, and soil respiration. Location and site characteristic data of 19 sampling locations within Wood Buffalo National Park, Canada are included in "sampling-site-characteristics.csv". File "Temp-all-burns.csv" contains temperature data collected 2 to 9 cm below the soil surface during 2 min. heat treatment (i.e. burn simulation) and the following 5-24 hrs. Following the burn simulations, total respiration from burned and unburned soil was collected via KOH base traps for up to 6 months ("raw-conductivity-readings.csv"). The metadata file ("all-sample-metadata.csv") contains measurements of soil pH, total C, and total N of O horizon and underlying mineral soil as well as model fits for respiration data.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Pyrolyzed Substrates Induce Aromatic Compound Metabolism in the Post-fire Fungus, Pyronema domesticum

Wildfires represent a fundamental and profound disturbance in many ecosystems, and their frequency and severity are increasing in many regions of the world. Fire affects soil by removing carbon in the form of CO2 and transforming remaining surface carbon into pyrolyzed organic matter (PyOM). Fires also generate substantial necromass at depths where the heat kills soil organisms but does not catalyze the formation of PyOM. Pyronema species strongly dominate soil fungal communities within weeks to months after fire. However, the carbon pool (i.e., necromass or PyOM) that fuels their rise in abundance is unknown. We used a Pyronema domesticum isolate from the catastrophic 2013 Rim Fire (CA, United States) to ask whether P. domesticum is capable of metabolizing PyOM. Pyronema domesticum grew readily on agar media where the sole carbon source was PyOM (specifically, pine wood PyOM produced at 750°C). Using RNAseq, we investigated the response of P. domesticum to PyOM and observed a comprehensive induction of genes involved in the metabolism and mineralization of aromatic compounds, typical of those found in PyOM. Lastly, we used 13 C-labeled 750°C PyOM to demonstrate that P. domesticum is capable of mineralizing PyOM to CO 2 . Collectively, our results indicate a robust potential for P. domesticum to liberate carbon from PyOM in post-fire ecosystems and return it to the bioavailable carbon pool.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Root carbon interation with soil minerals is dynamic, leaving a legacy of microbially derived residues

Minerals preserve the oldest most persistent soil carbon, and mineral characteristics appear to play a critical role in the formation of soil organic matter (SOM) associations. To test the hypothesis that carbon source and soil microorganisms also influence mineral-SOM associations, we incubated permeable minerals bags in soil microcosms with and without plants, in a 13CO2 labelling chamber. Mineral bags contained quartz, ferrihydrite, kaolinite, or native soil minerals isolated via density separation. Using 13C-NMR, FTICR-MS, and lipidomics, we traced plant-derived carbon onto minerals harvested from microcosms at three plant growth stages, characterizing total carbon, 13C enrichment, and SOM chemistry. While C accumulation was rapid and mineral-dependent, the accumulated amount was not significantly affected by the presence of plant roots. However, the rhizosphere did shape the chemistry of mineral-associated SOM. Minerals incubated in the rhizosphere were associated with a more diverse array of compounds with different C functional groups (carbonyl, aromatics, carbohydrates, lipids) than minerals incubated in a bulk soil control. These diverse rhizosphere-derived compounds may represent a “transient fraction” of mineral SOM, rapidly exchanging with mineral surfaces. Our results also suggest that many of the lipids which persist on minerals are microbially-derived with a large fraction of fungal lipids.

Rhizosphere, soil organic matter, grassland, 13C-N↗
DOE OSTI2021

Aged and unaged pine wood pyrogenic organic matter: mineralization, elemental analysis and spectroscopy data (February 2020)

In this study, we used a pyrogenic organic matter (PyOM) degrading Streptomyces isolate – a globally common soil bacterium – to investigate the effects of physical (freeze-thaw and wet-dry), chemical (oxidation), and biological (microbial community incubation) ageing on the chemical properties and mineralizability of 350°C and 550°C pine wood PyOM. We used Fourier Transform Infrared spectroscopy (FTIR) and elemental analysis to characterize the aged and unaged PyOM, and cavity ring-down spectroscopy to trace CO2 emissions. The carbon (C) mineralization data from incubation of aged and unaged PyOM with the isolate are provided in co2cmg_picarro_022020.csv. This dataset contains raw carbon dioxide (CO2) data measured on the cavity ring-down spectroscopy over 1 month of incubation. The dataset also includes processed data such as cumulative CO2 emitted over multiple cycles of measurement and CO2 values normalized by the total carbon content in each PyOM treatment. The carbon, hydrogen and nitrogen elemental content of aged and unaged 350°C and 550°C pine wood PyOM are provided in CHN_pyom.csv. The relative peak heights measured during the FTIR analysis of aged and unaged PyOM are provided in ftir_peaks_rel.csv.

54 ENVIRONMENTAL SCIENCES↗