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Smith, James

Publications and source records attributed to Smith, James.

At least 19 records
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DOE OSTI2024

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB, RCSB.org), the US Worldwide Protein Data Bank (wwPDB, wwPDB.org) data center for the global PDB archive, provides access to the PDB data via its RCSB.org research-focused web portal. We report substantial additions to the tools and visualization features available at RCSB.org, which now delivers more than 227000 experimentally determined atomic-level three-dimensional (3D) biostructures stored in the global PDB archive alongside more than 1 million Computed Structure Models (CSMs) of proteins (including models for human, model organisms, select human pathogens, crop plants and organisms important for addressing climate change). In addition to providing support for 3D structure motif searches with user-provided coordinates, new features highlighted herein include query results organized by redundancy-reduced Groups and summary pages that facilitate exploration of groups of similar proteins. Newly released programmatic tools are also described, as are enhanced training opportunities.

Burley, Stephen K.↗
DOE OSTI2024

Size resolved particle hygroscopcity for 30, 60, and 90 nm particles collected at the EPCAPE Mount Soledad site from 04/20/2023 to 06/15/2023

Contains both the growth factor probability density function (probability is out of 200) and the average growth factors calculated by the Gysel inversion. The instrument measured three different diameters 30 nm, 60nm and 90nm each diameter was selected for an hour. During that hour, five 12-minute scans were taken scanning growth factors from 0.5-3.0. RH was consistently kept at 85%. Calibrations of the instrument with NaCl were performed on 4/26/2023 from 11:20 to 14:20, on 5/16/2023 from 11:40 to 16:00, and on 5/30/2023 from 10:20 to 14:20. Calibrations with (NH4)2SO4 were performed on 5/8/2023 from 11:45 to 14:40, on 5/23/2023 from 11:20 to 3:00, and on 6/14/2023 from 13:00 to 16:00. Time is recorded in seconds since 1/1/1904.

30 nm particle hygroscopicity↗
DOE OSTI2024

Size resolved particle volatility for 30, 60, and 90 nm particles collected at the EPCAPE Mount Soledad site from 04/23/2023 to 06/15/2023

VTDMA GF-PDF: Growth factor probability density functions from the Gysel inversion are located here, where probability is out of 200. The instrument measured three different diameters 30 nm, 60nm and 90nm each diameter was selected for an hour. During that hour three different temperatures where scanned (40°C, 80°C, 160°C) in between each temperature a bypass scan was taken at room temperature. Each scan took 10-minutes and scanned growth factors from 0.2-1.2. Calibrations of the instrument with NaCl were performed on 4/26/2023 from 11:20 to 14:20, on 5/16/2023 from 11:40 to 16:00, and on 5/30/2023 from 10:20 to 14:20. Calibrations with (NH4)2SO4 were performed on 5/8/2023 from 11:45 to 14:40, on 5/23/2023 from 11:20 to 3:00, and on 6/14/2023 from 13:00 to 16:00. Time is recorded in seconds since 1/1/1904. GF_Vol_avg: Growth factor volume average calculated by the Gysel inversion. The instrument measured three different diameters 30 nm, 60nm and 90nm each diameter was selected for an hour. During that hour three different temperatures where scanned (40°C, 80°C, 160°C) in between each temperature a bypass scan was taken at room temperature. Each scan took 10-minutes and scanned growth factors from 0.2-1.2. Calibrations of the instrument with NaCl were performed on 4/26/2023 from 11:20 to 14:20, on 5/16/2023 from 11:40 to 16:00, and on 5/30/2023 from 10:20 to 14:20. Calibrations with (NH4)2SO4 were performed on 5/8/2023 from 11:45 to 14:40, on 5/23/2023 from 11:20 to 3:00, and on 6/14/2023 from 13:00 to 16:00. Time is recorded in seconds since 1/1/1904.

30nm growth factor volume average at 160C (GF_vol_↗