Baseliner: An open-source, interactive tool for processing sap flux data from thermal dissipation probes
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Engineering topics
Publications and source records attributed to Oren, Ram.
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Diurnal hysteresis between soil temperature (T s ) and both CO 2 concentration ([CO 2 ]) and soil respiration rate (R s ) were reported across different field experiments. However, the causes of these hysteresis patterns remain a subject of debate, with biotic and abiotic factors both invoked as explanations. Here, to address these issues, a CO 2 gas transport model is developed by combining a layer-wise mass conservation equation for subsurface gas phase CO 2 , Fickian diffusion for gas transfer, and a CO 2 source term that depends on soil temperature, moisture, and photosynthetic rate. Using this model, a hierarchy of numerical experiments were employed to disentangle the causes of the hysteretic [CO 2 ]-T s and CO 2 flux T s (i.e., F-T s ) relations. Model results show that gas transport alone can introduce both [CO 2 ]-T s and F-T s hystereses and also confirm prior findings that heat flow in soils lead to [CO 2 ] and F being out of phase with T s , thereby providing another reason for the occurrence of both hystereses. The area (A hys ) of the [CO 2 ]-T s hysteresis near the surface increases, while the A hys of the Rs-Ts hysteresis decreases as soils become wetter. Moreover, a time-lagged carbon input from photosynthesis deformed the [CO 2 ]-T s and R s -T s patterns, causing a change in the loop direction from counterclockwise to clockwise with decreasing time lag. An asymmetric 8-shaped pattern emerged as the transition state between the two loop directions. Lastly, tracing the pattern and direction of the hysteretic [CO 2 ]-T s and R s -T s relations can provide new ways to fingerprint the effects of photosynthesis stimulation on soil microbial activity and detect time lags between rhizospheric respiration and photosynthesis.
Ecosystem responses to rising CO2 concentrations are a major source of uncertainty in climate change projections. Data from ecosystem-scale Free-Air CO2 Enrichment (FACE) experiments provide a unique opportunity to reduce this uncertainty. The recent FACE Model–Data Synthesis project aimed to use the information gathered in two forest FACE experiments to assess and improve land ecosystem models. A new 'assumption-centred' model intercomparison approach was used, in which participating models were evaluated against experimental data based on the ways in which they represent key ecological processes. Identifying and evaluating the main assumptions caused differences among models, and the assumption-centered approach produced a clear roadmap for reducing model uncertainty. We explain this approach and summarize the resulting research agenda. We encourage the application of this approach in other model intercomparison projects to fundamentally improve predictive understanding of the Earth system.
Understanding how different plants prioritize carbon gain and drought vulnerability under a variable water supply is important for predicting which trees will maximize woody biomass production under different environmental conditions. Here, Populus balsamifera (BS, isohydric genotype), P. simonii (SI, previously uncharacterized stomatal behaviour), and their cross, P. balsamifera x simonii (BSxSI, anisohydric genotype) were studied to assess the physiological basis for biomass accumulation and water-use efficiency across a range of water availabilities. Under ample water, whole plant stomatal conductance (g s ), transpiration (E), and growth rates were higher in anisohydric genotypes (SI and BSxSI) than in isohydric poplars (BS). Under drought, all genotypes regulated the leaf to stem water potential gradient via changes in gs, synchronizing leaf hydraulic conductance (K leaf ) and E: isohydric plants reduced K leaf , g s , and E, whereas anisohydric genotypes maintained high K leaf and E, which reduced both leaf and stem water potentials. Nevertheless, SI poplars reduced their plant hydraulic conductance (K plant ) during water stress and, unlike, BSxSI plants, recovered rapidly from drought. Low gs of the isohydric BS under drought reduced CO 2 assimilation rates and biomass potential under moderate water stress. While anisohydric genotypes had the fastest growth under ample water and higher photosynthetic rates under increasing water stress, isohydric poplars had higher water-use efficiency. Overall, the results indicate three strategies for how closely related biomass species deal with water stress: survival-isohydric (BS), sensitive-anisohydric (BSxSI), and resilience-anisohydric (SI). Lastly, we discuss implications for woody biomass growth, water-use efficiency, and survival under variable environmental conditions.
We report odels of forest energy, water and carbon cycles assume decreased stomatal conductance with elevated atmospheric CO 2 concentration ([CO 2 ]) based on leaf-scale measurements, a response not directly translatable to canopies. Where canopy–atmosphere are well-coupled, [CO 2 ]-induced structural changes, such as increasing leaf-area index (L D ), may cause, or compensate for, reduced mean canopy stomatal conductance (G S ), keeping transpiration (E C ) and, hence, runoff unaltered. We investigated G S responses to increasing [CO 2 ] of conifer and broadleaved trees in a temperate forest subjected to 17-yr free-air CO 2 enrichment (FACE; + 200 μmol mol -1 ). During the final phase of the experiment, we employed step changes of [CO 2 ] in four elevated-[CO 2 ] plots, separating direct response to changing [CO 2 ] in the leaf-internal air-space from indirect effects of slow changes via leaf hydraulic adjustments and canopy development. Short-term manipulations caused no direct response up to 1.8 × ambient [CO 2 ], suggesting that the observed long-term 21% reduction of G S was an indirect effect of decreased leaf hydraulic conductance and increased leaf shading. Thus, E C was unaffected by [CO 2 ] because 19% higher canopy L D nullified the effect of leaf hydraulic acclimation on G S . Finally, we advocate long-term experiments of duration sufficient for slow responses to manifest, and modifying models predicting forest water, energy and carbon cycles accordingly.
The project yielded papers on fluxes (energy, water and carbon dioxide)between each ecosystem and the atmosphere, and explained the temporal dynamics of fluxes based on intrinsic (physiology, canopy leaf area and structure) and extrinsic (atmospheric and edaphic conditions). Comparisons between any two of the ecosystems, and among all three followed, attributing differences in behavior to different patterns of phenology and differential sensitivities to soil and atmospheric humidity. Finally, data from one-to-three of the ecosystems (incorporated into FluxNet data archive) were used in syntheses across AmeriFlux sites and even more broadly across FluxNet sites.
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Free Air CO2 Enrichment (FACE) experiments provide a remarkable wealth of data to test the sensitivities of terrestrial ecosystem models (TEMs). In this study, a broad set of 11 TEMs were compared to 22 years of data from two contrasting FACE experiments in temperate forests of the south eastern US the evergreen Duke Forest and the deciduous Oak Ridge forest. We evaluated the models' ability to reproduce observed net primary productivity (NPP), transpiration and Leaf Area index (LAI) in ambient CO2 treatments. Encouragingly, many models simulated annual NPP and transpiration within observed uncertainty. Daily transpiration model errors were often related to errors in leaf area phenology and peak LAI. Our analysis demonstrates that the simulation of LAI often drives the simulation of transpiration and hence there is a need to adopt the most appropriate of hypothesis driven methods to simulate and predict LAI. Of the three competing hypotheses determining peak LAI (1) optimisation to maximise carbon export, (2) increasing SLA with canopy depth and (3) the pipe model the pipe model produced LAI closest to the observations. Modelled phenology was either prescribed or based on broader empirical calibrations to climate. In some cases, simulation accuracy was achieved through compensating biases in component variables. For example, NPP accuracy was sometimes achieved with counter-balancing biases in nitrogen use efficiency and nitrogen uptake. Combined analysis of parallel measurements aides the identification of offsetting biases; without which over-confidence in model abilities to predict ecosystem function may emerge, potentially leading to erroneous predictions of change under future climates.
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Although temperature is an important driver of seasonal changes in photosynthetic physiology, photoperiod also regulates leaf activity. Climate change will extend growing seasons if temperature cues predominate, but photoperiod-controlled species will show limited responsiveness to warming. We show that photoperiod explains more seasonal variation in photosynthetic activity across 23 tree species than temperature. Although leaves remain green, photosynthetic capacity peaks just after summer solstice and declines with decreasing photoperiod, before air temperatures peak. In support of these findings, saplings grown at constant temperature but exposed to an extended photoperiod maintained high photosynthetic capacity, but photosynthetic activity declined in saplings experiencing a naturally shortening photoperiod; leaves remained equally green in both treatments. Incorporating a photoperiodic correction of photosynthetic physiology into a global-scale terrestrial carbon-cycle model significantly improves predictions of seasonal atmospheric CO{sub 2} cycling, demonstrating the benefit of such a function in coupled climate system models. Accounting for photoperiod-induced seasonality in photosynthetic parameters reduces modeled global gross primary production 2.5% ({approx}4 PgC y{sup -1}), resulting in a >3% ({approx}2 PgC y{sup -1}) decrease of net primary production. Such a correction is also needed in models estimating current carbon uptake based on remotely sensed greenness. Photoperiod-associated declines in photosynthetic capacity could limit autumn carbon gain in forests, even if warming delays leaf senescence.
Recently a number of satellites have been launched with radar sensors, thus expanding opportunities for global assessment. In this article we focus on the applications of imaging radar, which is a type of sensor that actively generates pulses of microwaves and, in the interval between sending pulses, records the returning signals reflected back to an antenna.
The Boreal Ecosystem - Atmosphere Study (BOREAS) is a multidisciplinary field.
In the tropical rain forests of Manu, in Peru, where forest biomass ranges from 4 kg/sq m in young forest succession up to 100 kg/sq m in old, undisturbed floodplain stands, the P-band polarimetric radar data gathered in June of 1993 by the AIRSAR (Airborne Synthetic Aperture Radar) instrument separate most major vegetation formations and also perform better than expected in estimating woody biomass. The worldwide need for large scale, updated biomass estimates, achieved with a uniformly applied method, as well as reliable maps of land cover, justifies a more in-depth exploration of long wavelength imaging radar applications for tropical forests inventories.
In three test sites of boreal and temperate forests, P-band polarimetric radar data estimate total above-ground dry woody biomass with 10 to 30 of the actual biomass values, depending on the complexity of the forest. A description and examples of the process are provided. The worldwide need for large scale, updated biomass estimates, achieved with a uniformly applied method, justifies a more in-depth exploration of long wavelength imaging radar applications for tropical forest inventories.
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An experiment that has been performed to verify the relationship between the dielectric constant of several tree species and their respective water potentials is described. The water potential, xylem flow and dielectric properties of five tree species were continuously monitored while simultaneously manipulating canopy transpiration and water status. An analysis of the data recorded during these manipulations is presented. Results of this analysis demonstrate a clear coincidence of change in dielectric constant and water status. The implication of this relationship for the utilization of remotely sensed data to study canopy water relations is explored. Preliminary backscatter modeling results demonstrate that the changes in dielectric constant that occur as a result of changes in water status are significant enough to be observable with microwave radar.