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Oden, J. T.

Publications and source records attributed to Oden, J. T..

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2018

Calibration of Multi-Parameter Models of Avascular Tumor Growth Using Time Resolved Microscopy Data

Abstract Two of the central challenges of using mathematical models for predicting the spatiotemporal development of tumors is the lack of appropriate data to calibrate the parameters of the model, and quantitative characterization of the uncertainties in both the experimental data and the modeling process itself. We present a sequence of experiments, with increasing complexity, designed to systematically calibrate the rates of apoptosis, proliferation, and necrosis, as well as mobility, within a phase-field tumor growth model. The in vitro experiments characterize the proliferation and death of human liver carcinoma cells under different initial cell concentrations, nutrient availabilities, and treatment conditions. A Bayesian framework is employed to quantify the uncertainties in model parameters. The average difference between the calibration and the data, across all time points is between 11.54% and 14.04% for the apoptosis experiments, 7.33% and 23.30% for the proliferation experiments, and 8.12% and 31.55% for the necrosis experiments. The results indicate the proposed experiment-computational approach is generalizable and appropriate for step-by-step calibration of multi-parameter models, yielding accurate estimations of model parameters related to rates of proliferation, apoptosis, and necrosis.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2017

Adaptive selection and validation of models of complex systems in the presence of uncertainty

This study describes versions of OPAL, the Occam-Plausibility Algorithm in which the use of Bayesian model plausibilities is replaced with information theoretic methods, such as the Akaike Information Criterion and the Bayes Information Criterion. Applications to complex systems of coarse-grained molecular models approximating atomistic models of polyethylene materials are described. All of these model selection methods take into account uncertainties in the model, the observational data, the model parameters, and the predicted quantities of interest. A comparison of the models chosen by Bayesian model selection criteria and those chosen by the information-theoretic criteria is given.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1993

Advanced adaptive computational methods for Navier-Stokes simulations in rotorcraft aerodynamics

A phase 2 research and development effort was conducted in area transonic, compressible, inviscid flows with an ultimate goal of numerically modeling complex flows inherent in advanced helicopter blade designs. The algorithms and methodologies therefore are classified as adaptive methods, which are error estimation techniques for approximating the local numerical error, and automatically refine or unrefine the mesh so as to deliver a given level of accuracy. The result is a scheme which attempts to produce the best possible results with the least number of grid points, degrees of freedom, and operations. These types of schemes automatically locate and resolve shocks, shear layers, and other flow details to an accuracy level specified by the user of the code. The phase 1 work involved a feasibility study of h-adaptive methods for steady viscous flows, with emphasis on accurate simulation of vortex initiation, migration, and interaction. Phase 2 effort focused on extending these algorithms and methodologies to a three-dimensional topology.

Stowers, S. T.↗
NASA NTRS1993

H-P adaptive methods for finite element analysis of aerothermal loads in high-speed flows

The commitment to develop the National Aerospace Plane and Maneuvering Reentry Vehicles has generated resurgent interest in the technology required to design structures for hypersonic flight. The principal objective of this research and development effort has been to formulate and implement a new class of computational methodologies for accurately predicting fine scale phenomena associated with this class of problems. The initial focus of this effort was to develop optimal h-refinement and p-enrichment adaptive finite element methods which utilize a-posteriori estimates of the local errors to drive the adaptive methodology. Over the past year this work has specifically focused on two issues which are related to overall performance of a flow solver. These issues include the formulation and implementation (in two dimensions) of an implicit/explicit flow solver compatible with the hp-adaptive methodology, and the design and implementation of computational algorithm for automatically selecting optimal directions in which to enrich the mesh. These concepts and algorithms have been implemented in a two-dimensional finite element code and used to solve three hypersonic flow benchmark problems (Holden Mach 14.1, Edney shock on shock interaction Mach 8.03, and the viscous backstep Mach 4.08).

Chang, H. J.↗
NASA NTRS1992

Theory and implementation of high-order adaptive hp methods for analysis of incompressible viscous flows

An account is given of 'smart' algorithms for CFD which change in structure and performance with during flow calculations to accommodate changing properties of the solution. Such algorithms prominently include adaptive FEM methods, which are designed to adjust mesh parameters for the control of numerical error; attention is presently given to those which change the mesh size h and the local spectral order p in order to achieve high accuracies with minimal numbers of degrees of freedom. These 'hp methods' produce exponentially convergent approximations through which flow features are resolved by automatically distributing element sizes and spectral orders. This leads to calculation of the local (elementwise) error in the approximation.

Oden, J. T.↗
NASA NTRS1992

Adaptive methods in computational fluid dynamics

A review is conducted of the basic components of adaptive methods applicable to very complex problems in fluid dynamics. Attention is given to ways of changing the structure of an approximation to reduce error, techniques for estimating the evolution of error in a CFD calculation, and the range of algorithms that are currently available for mesh-changing functions. Available numerical results which demonstrate the viability of these approaches are discussed.

Oden, J. T.↗
NASA NTRS1991

h-p adaptive finite element methods in computational fluid dynamics

The principal ideas of h-p adaptive finite element methods for fluid dynamics problems are discussed. Applications include acoustics, compressible Euler and both compressible and incompressible Navier-Stokes equations. Several numerical examples illustrate the presented concepts.

Oden, J. T.↗
NASA NTRS1991

An h-p Taylor-Galerkin finite element method for compressible Euler equations

An extension of the familiar Taylor-Galerkin method to arbitrary h-p spatial approximations is proposed. Boundary conditions are analyzed, and a linear stability result for arbitrary meshes is given, showing the unconditional stability for the parameter of implicitness alpha not less than 0.5. The wedge and blunt body problems are solved with both linear, quadratic, and cubic elements and h-adaptivity, showing the feasibility of higher orders of approximation for problems with shocks.

Demkowicz, L.↗
NASA NTRS1991

A Runge-Kutta discontinuous finite element method for high speed flows

A Runge-Kutta discontinuous finite element method is developed for hyperbolic systems of conservation laws in two space variables. The discontinuous Galerkin spatial approximation to the conservation laws results in a system of ordinary differential equations which are marched in time using Runge-Kutta methods. Numerical results for the two-dimensional Burger's equation show that the method is (p+1)-order accurate in time and space, where p is the degree of the polynomial approximation of the solution within an element and is capable of capturing shocks over a single element without oscillations. Results for this problem also show that the accuracy of the solution in smooth regions is unaffected by the local projection and that the accuracy in smooth regions increases as p increases. Numerical results for the Euler equations show that the method captures shocks without oscillations and with higher resolution than a first-order scheme.

Bey, Kim S.↗
NASA NTRS1990

A new finite element method for solving compressible Navier-Stokes equations based on an operator splitting method and h-p adaptivity

A new finite element method solving compressible Navier-Stokes equations is proposed. The method is based on a version of Strang's operator splitting and an h-p adaptive finite element approximation in space. This paper contains the formulation of the method with a detailed discussion of boundary conditions, a sample adaptive strategy and numerical examples involving compressible viscous flow over a flat plate with Reynolds number Re = 1000 and Re = 10,000.

Demkowicz, L.↗
NASA NTRS1990

New developments in adaptive methods for computational fluid dynamics

New developments in a posteriori error estimates, smart algorithms, and h- and h-p adaptive finite element methods are discussed in the context of two- and three-dimensional compressible and incompressible flow simulations. Applications to rotor-stator interaction, rotorcraft aerodynamics, shock and viscous boundary layer interaction and fluid-structure interaction problems are discussed.

Oden, J. T.↗
NASA NTRS1989

Adaptive methods, rolling contact, and nonclassical friction laws

Results and methods on three different areas of contemporary research are outlined. These include adaptive methods, the rolling contact problem for finite deformation of a hyperelastic or viscoelastic cylinder, and non-classical friction laws for modeling dynamic friction phenomena.

Oden, J. T.↗
NASA NTRS1988

Paradigmatic error calculations for adaptive finite element approximations of convection dominated flows

New error estimation techniques are described for two-dimensional convection-dominated flows. Examples of applications to linear convection problems are given. The methods are based on discontinuous finite-element techniques. Results show that conventional interpolation methods may lead to gross underestimates of actual error and be inadequate for use in adaptive methods.

Oden, J. T.↗
NASA NTRS1987

Adaptive finite element methods for high-speed compressible flows

An adaptive finite element algorithm for solving the unsteady Euler equations is described. The finite element algorithm is based on a Taylor/Galerkin formulation and uses a very fast and efficient data structure to refine and unrefine the grid in order to optimize the approximation. A general version of the method which can be applied to moving grids with sliding interfaces is given, and results for a transient supersonic calculation of rotor-stator interaction are presented.

Oden, J. T.↗