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Mueller, James L.

Publications and source records attributed to Mueller, James L..

MOBY, A Radiometric Buoy for Performance Monitoring and Vicarious Calibration of Satellite Ocean Color Sensors: Measurement and Data Analysis Protocols

The Marine Optical Buoy (MOBY) is the centerpiece of the primary ocean measurement site for calibration of satellite ocean color sensors based on independent in situ measurements. Since late 1996, the time series of normalized water-leaving radiances L(sub WN)(lambda) determined from the array of radiometric sensors attached to MOBY are the primary basis for the on-orbit calibrations of the USA Sea-viewing Wide Field-of-view Sensor (SeaWiFS), the Japanese Ocean Color and Temperature Sensor (OCTS), the French Polarization Detection Environmental Radiometer (POLDER), the German Modular Optoelectronic Scanner on the Indian Research Satellite (IRS1-MOS), and the USA Moderate Resolution Imaging Spectrometer (MODIS). The MOBY vicarious calibration L(sub WN)(lambda) reference is an essential element in the international effort to develop a global, multi-year time series of consistently calibrated ocean color products using data from a wide variety of independent satellite sensors. A longstanding goal of the SeaWiFS and MODIS (Ocean) Science Teams is to determine satellite-derived L(sub WN)(labda) with a relative combined standard uncertainty of 5 %. Other satellite ocean color projects and the Sensor Intercomparison for Marine Biology and Interdisciplinary Oceanic Studies (SIMBIOS) project have also adopted this goal, at least implicitly. Because water-leaving radiance contributes at most 10 % of the total radiance measured by a satellite sensor above the atmosphere, a 5 % uncertainty in L(sub WN)(lambda) implies a 0.5 % uncertainty in the above-atmosphere radiance measurements. This level of uncertainty can only be approached using vicarious-calibration approaches as described below. In practice, this means that the satellite radiance responsivity is adjusted to achieve the best agreement, in a least-squares sense, for the L(sub WN)(lambda) results determined using the satellite and the independent optical sensors (e.g. MOBY). The end result of this approach is to implicitly absorb unquantified, but systematic, errors in the atmospheric correction, incident solar flux, and satellite sensor calibration into a single correction factor to produce consistency with the in situ data.

Clark, Dennis K.

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation

This document stipulates protocols for measuring bio-optical and radiometric data for the SIMBIOS Project. It supersedes the earlier version, and is organized into four parts: Introductory Background, Instrument Characteristics, Field Measurements and Data Analysis, Data Reporting and Archival. Changes in this revision include the addition of three new chapters: (1) Fundamental Definitions, Relationships and Conventions; (2) MOBY, A Radiometric Buoy for Performance Monitoring and Vicarious Calibration of Satellite Ocean Color Sensors: Measurement and Data Analysis Protocols; and (3) Normalized Water-Leaving Radiance and Remote Sensing Reflectance: Bidirectional Reflectance and Other Factors. Although the present document represents another significant, incremental improvement in the ocean optics protocols, there are several protocols that have either been overtaken by recent technological progress, or have been otherwise identified as inadequate. Revision 4 is scheduled for completion sometime in 2003. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational Project. The contributions are published as submitted, after only minor editing to correct obvious grammatical or clerical errors.

Mueller, James L.

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation

This document stipulates protocols for measuring bio-optical and radiometric data for the SIMBIOS Project. It supersedes the earlier version, and is organized into four parts: Introductory Background, Instrument Characteristics, Field Measurements and Data Analysis, Data Reporting and Archival. Changes in this revision include the addition of three new chapters: (1) Fundamental Definitions, Relationships and Conventions; (2) MOBY, A Radiometric Buoy for Performance Monitoring and Vicarious Calibration of Satellite Ocean Color Sensors: Measurement and Data Analysis Protocols; and (3) Normalized Water-Leaving Radiance and Remote Sensing Reflectance: Bidirectional Reflectance and Other Factors. Although the present document represents another significant, incremental improvement in the ocean optics protocols, there are several protocols that have either been overtaken by recent technological progress, or have been otherwise identified as inadequate. Revision 4 is scheduled for completion sometime in 2003. This technical report is not meant as a substitute for scientific literature. Instead, it will provide a ready and responsive vehicle for the multitude of technical reports issued by an operational Project. The contributions are published as submitted, after only minor editing to correct obvious grammatical or clerical errors.

Mueller, James L.

SIMBIOS Normalized Water-Leaving Radiance Calibration and Validation: Sensor Response, Atmospheric Corrections, Stray Light and Sun Glint

This Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) contract supports acquisition of match up radiometric and bio-optical data for validation of Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) and other ocean color satellites, and evaluation of uncertainty budgets and protocols for in situ measurements of normalized water leaving radiances.

Mueller, James L.

SeaWiFS Postlaunch Technical Report Series: SeaWIFS Postlaunch Calibration and Validation Analyses - Volume 11

Volume 11 continues the sequential presentation of postlaunch data analysis and algorithm descriptions begun in Volume 9. Chapters 1 and 2 present the OC2 (version 2) and OC4 (version 4) chlorophyll a algorithms used in the SeaWiFS data second and third reprocessings, August 1998 and May 2000, respectively. Chapter 3 describes a revision of the K(490) algorithm designed to use water-leaving radiances at 490 nm which was implemented for the third reprocessing. Finally, Chapter 4 is an analysis of in situ radiometer calibration data over several years at the University of California, Santa Barbara (UCSB) to establish the temporal consistency of their in-water optical measurements.

Hooker, Stanford B.

Ocean Optics Protocols for Satellite Ocean Color Sensor Validation

The document stipulates protocols for measuring bio-optical and radiometric data for the Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project activities and algorithm development. This document supersedes the earlier version (Mueller and Austin 1995) published as Volume 25 in the SeaWiFS Technical Report Series. This document marks a significant departure from, and improvement on, theformat and content of Mueller and Austin (1995). The authorship of the protocols has been greatly broadened to include experts specializing in some key areas. New chapters have been added to provide detailed and comprehensive protocols for stability monitoring of radiometers using portable sources, abovewater measurements of remote-sensing reflectance, spectral absorption measurements for discrete water samples, HPLC pigment analysis and fluorometric pigment analysis. Protocols were included in Mueller and Austin (1995) for each of these areas, but the new treatment makes significant advances in each topic area. There are also new chapters prescribing protocols for calibration of sun photometers and sky radiance sensors, sun photometer and sky radiance measurements and analysis, and data archival. These topic areas were barely mentioned in Mueller and Austin (1995).

Fargion, Giulietta S.

SeaWiFS Postlaunch Technical Report Series: The Fifth Sea-WiFS Intercalibration Round-Robin Experiment (SIRREX-5), July 1996 - Volume 7

This report documents the fifth Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Intercalibration Round-Robin Experiment (SIRREX-5), which was held at the National Institute of Standards and Technology (NIST) on 23-30 July 1996. The agenda for SIRREX-5 was established based on recommendations made during SIRREX-4. For the first time in a SIRREX activity, instrument intercomparisons were performed at field sites, which were near NIST. The goals of SIRREX-5 were to continue the emphasis on training and the implementation of standard measurement practices, investigate the calibration methods and measurement chains in use by the oceanographic community, provide opportunities for discussion, and intercompare selected instruments. As at SIRREX-4, the day was divided between morning lectures and afternoon laboratory exercises. A set of core laboratory sessions were performed: 1) in-water radiant flux measurements; 2) in-air radiant flux measurements; 3) spectral radiance responsivity measurements using the plaque method; 4) device calibration or stability monitoring with portable field sources; and 5) various ancillary exercises designed to illustrate radiometric concepts. Before, during, and after SIRREX-5, NIST calibrated the SIRREX-5 participating radiometers for radiance and irradiance responsivity. The Facility for Automated Spectroradiometric Calibrations (FASCAL) was scheduled for spectral irradiance calibrations for standard lamps during SIRREX-5. Three lamps from the SeaWiFS community were submitted and two were calibrated.

Hooker, Stanford B.

SeaWiFS Technical Report Series: Case Studies for SeaWiFS Calibration and Validation - Volume 41

This document provides brief reports, or case studies, on a number of investigations sponsored by the Calibration and Validation Team (CVT) within the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Project. Chapter I describes the calibration and characterization of the GSFC sphere, which was used in the recent recalibration of the SeaWiFS instrument. Chapter 2 presents a revision of the diffuse attenuation coefficient, K(490), algorithm based on the SeaWiFS wavelengths. Chapter 3 provides an implementation scheme for an algorithm to remove out-of-band radiance when using a sensor calibration based on a finite width (truncated) spectral response function, e.g., between the 1% transmission points. Chapter 4 describes the implementation schemes for the stray light quality flag (local area coverage [LAC] and global area coverage [GAC]) and the LAC stray light correction.

Yeh, Eueng-nan

Sea WiFS Technical Report Series: The fourth SeaWIFS Intercalibration Round-Robin Experiment (SIRREX-4), May 1995

This report documents the fourth Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Intercalibration Round-Robin Experiment (SIRREX-4), which was held at the National Institute of Standards and Technology (NIST) on 3-10 May 1995. The agenda for SIRREX-4 was established by a consensus reached at the conclusion of SIRREX-3: there should be an emphasis on training and work to foster and encourage uniform use of accepted protocols for calibrating radiometric instruments in the laboratory. The goal was to host the activity in a setting where proper techniques could be discussed and demonstrated. It seemed appealing to split the day between morning lectures and afternoon laboratory exercises or practicals. The former gave the user community a chance to present what was important to them and discuss it with acknowledged experts in radiometry, while the latter presented a unique opportunity for training and evaluation in the presence of these same experts. The five laboratory sessions were concerned with (1) determining the responsivity of a spectroradiometer and the spectral radiance of an unknown integrating sphere source, (2) demonstrating spectral field calibration procedures for an integrating sphere using three different instruments, (3) measuring spectral radiance using the plaque method, (4) setting up and aligning lamp calibration transfer standards using the NIST specifications for irradiance measurements, and (5) characterizing radiometric instruments. In addition to documenting some supplemental studies performed outside the laboratory sessions, this report includes an evaluation of the hardware that has been used during the SIRREX activities plus a critical evaluation of SIRREX objectives.

Johnson, B. Carol

SeaWiFs Technical Report Series. Volume 34: The Third SeaWiFS Intercalibration Round-Robin Experiment (SIRREX-3), 19-30 September 1994

This report presents results of the third Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Intercalibration Round- Robin Experiment (SIRREX-3), which was held at the San Diego State University (SDSU) Center for Hydro-Optics and Remote Sensing (CHORS) on 19-30 September 1994. Spectral irradiances of FEL lamps belonging to each participant were intercompared by reference to the National Institute of Standards and Technology (NIST) scale of spectral irradiance using secondary standard lamps F268, F269, and F182, with a Type A uncertainty between 1.1-1.5%. This level of uncertainty was achieved despite difficulties with lamp F269. The average spectral irradiances of FEL lamps, compared in both SIRREX-2 and SIRREX-3, differed between the two experiments by 1.5%, which probably indicates that the values assigned to the secondary standard lamp at the time of SIRREX-2 were in error. With two exceptions, spectral radiance values of integrating sphere sources were measured during SIRREX-3 with uncertainties in temporal stability of less than 0.3% and absolute uncertainties of 1.5-2.0%. This is a significant improvement over similar intercomparisons in SIRREX- I and SIRREX-2. Plaque reflectances were intercompared with an uncertainty of about 1-2%, but the absolute uncertainty is undefined. Although this is an improvement over results of previous SIRREXS, the sources and magnitude of uncertainty associated with transfers of spectral radiance using plaques requires further evaluation in future experiments.

Hooker, Stanford B.

A comparison of methods for the measurement of the absorption coefficient in natural waters

In the spring of 1992 an optical closure experiment was conducted at Lake Pend Orielle, Idaho. A primary objective of the experiment was to compare techniques for the measurement of the spectral absorption coefficent and other inherent optical properties of natural waters. Daily averages of absorption coefficents measured using six methods are compared at wavelengths of 456, 488, and 532 nm. Overall agreement was within 40% at 456 nm and improved with increasing wavelength to 25% at 532 nm. These absorption measurements were distributed over the final 9 days of the experiement, when bio-optical conditions in Lake Pend Oreille (as indexed by the beam attenuation coefficent c(sub p)(660) and chlorophyll a fluorescence profiles) were representative of those observed throughout the experiment. However, profiles of stimulated chlorophyll a fluorescence and beam transmission showed that bio-optical properties in the lake varied strongly on all time and space scales. Therefore environmental variabilty contributed significantly to deviations between daily mean absorption coefficients measured using the different techniques.

Pegau, W. Scott

SeaWiFS technical report series. Volume 25: Ocean optics protocols for SeaWiFS validation, revision 1

This report presents protocols for measuring optical properties, and other environmental variables, to validate the radiometric performance of the Sea-viewing Wide Field-of-view Sensor (SeaWiFS), and to develop and validate bio-optical algorithms for use with SeaWiFS data. The protocols are intended to establish foundations for a measurement strategy to verify the challenging SeaWiFS uncertainty goals of 5 percent in water-leaving radiances and 35 percent in chlorophyll alpha concentration. The protocols first specify the variables which must be measured, and briefly review the rationale for measuring each variable. Subsequent chapters cover detailed protocols for instrument performance specifications, characterizing and calibrating instruments, methods of making measurements in the field, and methods of data analysis. These protocols were developed at a workshop sponsored by the SeaWiFS Project Office (SPO) and held at the Naval Postgraduate School in Monterey, California (9-12 April 1991). This report began as the proceedings of the workshop, as interpreted and expanded by the authors and reviewed by workshop participants and other members of the bio-optical research community. The protocols are an evolving prescription to allow the research community to approach the unprecedented measurement uncertainties implied by the SeaWiFS goals; research and development are needed to improve the state-of-the-art in specific areas. These protocols should be periodically revised to reflect technical advances during the SeaWiFS Project cycle. The present edition (Revision 1) incorporates new protocols in several areas, including expanded protocol descriptions for Case-2 waters and other improvements, as contributed by several members of the SeaWiFS Science Team.

Hooker, Stanford B.

SeaWiFS technical report series. Volume 26: Results of the SeaWiFS Data Analysis Round-Robin, July 1994 (DARR-1994)

The accurate determination of upper ocean apparent optical properties (AOP's) is essential for the vicarious calibration of the sea-viewing wide field-of-view sensor (SeaWiFS) instrument and the validation of the derived data products. To evaluate the role that data analysis methods have upon values of derived AOP's, the first Data Analysis Round-Robin (DARR-94) workshop was sponsored by the SeaWiFS Project during 21-23 July, 1994. The focus of this intercomparison study was the estimation of the downwelling irradiance spectrum just beneath the sea surface, E(sub d)(0(sup -), lambda); the upwelling nadir radiance just beneath the sea surface, L(sub u)(0(sup -), lambda); and the vertical profile of the diffuse attenuation coefficient spectrum, K(sub d)(z, lambda). In the results reported here, different methodologies from four research groups were applied to an identical set of 10 spectroradiometry casts in order to evaluate the degree to which data analysis methods influence AOP estimation, and whether any general improvements can be made. The overall results of DARR-94 are presented in Chapter 1 and the individual methods of the four groups are presented in Chapters 2-5. The DARR-94 results do not show a clear winner among data analysis methods evaluated. It is apparent, however, that some degree of outlier rejection is required in order to accurately estimate L(sub u)(0(sup -), lambda) or E(sub d)(0(sup -), lambda). Furthermore, the calculation, evaluation and exploitation of confidence intervals for the AOP determinations needs to be explored. That is, the SeaWiFS calibration and validation problem should be recast in statistical terms where the in situ AOP values are statistical estimates with known confidence intervals.

Hooker, Stanford B.

SeaWiFS technical report series. Volume 16: The second SeaWiFS Intercalibration Round-Robin Experiment, SIRREX-2, June 1993

The results of the second Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Intercalibration Round-Robin Experiment (SIRREX-2), which was held at the Center for Hydro-Optics and Remote Sensing (CHORS) at San Diego State University on 14-25 Jun. 1993 are presented. SeaWiFS is an ocean color radiometer that is scheduled for launch in 1994. The SIRREXs are part of the SeaWiFS Calibration and Validation Program that includes the GSFC, CHORS, NIST, and several other laboratories. GSFC maintains the radiometric scales (spectral radiance and irradiance) for the SeaWiFS program using spectral irradiance standards lamps, which are calibrated by NIST. The purpose of each SIRREX is to assure that the radiometric scales which are realized by the laboratories who participate in the SeaWiFS Calibration and Validation Program are correct; that is, the uncertainties of the radiometric scales are such that measurements of normalized water-leaving radiance using oceanographic radiometers have uncertainties of 5%. SIRREX-1 demonstrated, from the internal consistency of the results, that the program goals would not be met without improvements to the instrumentation. The results of SIRREX-2 demonstrate that spectral irradiance scales realized using the GSFC standard irradiance lamp (F269) are consistent with the program goals, as the uncertainty of these measurements is assessed to be about 1%. However, this is not true for the spectral radiance scales, where again the internal consistency of the results is used to assess the uncertainty. This is attributed to inadequate performance and characterization of the instrumentation. For example, spatial nonuniformities, spectral features, and sensitivity to illumination configuration were observed in some of the integrating sphere sources. The results of SIRREX-2 clearly indicate the direction for future work, with the main emphasis on instrument characterization and the assessment of the measurement uncertainties so that the results may be stated in a more definitive manner.

Hooker, Stanford B.

Volume 14: The first SeaWiFS intercalibration round-robin experiment, SIRREX-1, July 1992

The results of the first Sea-viewing Wide Field-of-view Sensor (SeaWiFS) Intercalibration Round-Robin Experiment (SIRREX-1), which was held at the Center for Hydro-Optics and Remote Sensing (CHORS) at San Diego State University (SDSU) on 27-31 July 1992 are presetend. Oceanographic radiometers to be used in the SeaWiFS Calibration and Validation Program will be calibrated by individuals from the National Aeronautics and Space Administration's (NASA's) Goddard Space Flight Center (GSFC), CHORS, and seven other laboratories. The purpose of the SIRREX experiments is to assure the radiometric standards used in all of these laboratories are referenced to the same scales of spectral irradiance and radiance, which will be maintained by GSFC and periodically recalibrated by the National Institute of Standards and Technology (NIST). The spectral irradiance scale of GSFC's FEL lamp number F269 (recalibrated by NIST in October 1992) was transferred to lamps belonging to the 9 participating laboratories; l set of lamp transfer measurements (involving 4 of the lamps) was precise to within less than 1 percent and meets SeaWiFS goals, but a second set (involving another 14 lamps) did not. The spectral radiance scale of the GSFC 40-inch integrating sphere source was transferred to integrating sphere radiance sources belonging to four of the other laboratories. Reflectance plaques, used for irradiance-to-radiance transfer by five of the laboratories, were compared, but spectral bidirectional reflectance distribution functions (BRDF's) were not determined quantitatively. Also reported are results of similar comparisons (in October 1992) between the GSFC scales of spectral irradiance and radiance and those used by the Hughes/Santa Barbara Research Center (SBRC) to calibrate and characterize the SeaWiFS instrument. This first set of intercalibration round-robin experiments was a valuable learning experience for all participants, and led to several important procedural changes, which will be implemented in the second SIRREX, to be held at CHORS in June 1993.

Mueller, James L.

SeaWiFS technical report series. Volume 5: Ocean optics protocols for SeaWiFS validation

Protocols are presented for measuring optical properties, and other environmental variables, to validate the radiometric performance of the Sea-viewing Wide Field-of-view Sensor (SeaWiFS), and to develop and validate bio-optical algorithms for use with SeaWiFS data. The protocols are intended to establish foundations for a measurement strategy to verify the challenging SeaWiFS accuracy goals of 5 percent in water-leaving radiances and 35 percent in chlorophyll alpha concentration. The protocols first specify the variables which must be measured, and briefly review rationale. Subsequent chapters cover detailed protocols for instrument performance specifications, characterizing and calibration instruments, methods of making measurements in the field, and methods of data analysis. These protocols were developed at a workshop sponsored by the SeaWiFS Project Office (SPO) and held at the Naval Postgraduate School in Monterey, California (9-12 April, 1991). This report is the proceedings of that workshop, as interpreted and expanded by the authors and reviewed by workshop participants and other members of the bio-optical research community. The protocols are a first prescription to approach unprecedented measurement accuracies implied by the SeaWiFS goals, and research and development are needed to improve the state-of-the-art in specific areas. The protocols should be periodically revised to reflect technical advances during the SeaWiFS Project cycle.

Mueller, James L.

Biooptical variability in the Greenland Sea observed with the Multispectral Airborne Radiometer System (MARS)

A site-specific ocean color remote sensing algorithm was developed and used to convert Multispectral Airborne Radiometer System (MARS) spectral radiance measurements to chlorophyll-a concentration profiles along aircraft tracklines in the Greenland Sea. The analysis is described and the results given in graphical or tabular form. Section 2 describes the salient characteristics and history of development of the MARS instrument. Section 3 describes the analyses of MARS flight segments over consolidated sea ice, resulting in a set of altitude dependent ratios used (over water) to estimate radiance reflected by the surface and atmosphere from total radiance measured. Section 4 presents optically weighted pigment concentrations calculated from profile data, and spectral reflectances measured in situ from the top meter of the water column; this data was analyzed to develop an algorithm relating chlorophyll-a concentrations to the ratio of radiance reflectances at 441 and 550 nm (with a selection of coefficients dependent upon whether significant gelvin presence is implied by a low ratio of reflectances at 410 and 550 nm). Section 5 describes the scaling adjustments which were derived to reconcile the MARS upwelled radiance ratios at 410:550 nm and 441:550 nm to in situ reflectance ratios measured simultaneously on the surface. Section 6 graphically presents the locations of MARS data tracklines and positions of the surface monitoring R/V. Section 7 presents stick-plots of MARS tracklines selected to illustrate two-dimensional spatial variability within the box covered by each day's flight. Section 8 presents curves of chlorophyll-a concentration profiles derived from MARS data along survey tracklines. Significant results are summarized in Section 1.

Mueller, James L.