Data for EMSL Project 50231 from July 2019
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Engineering topics
Publications and source records attributed to Lu, Yi.
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Metalloproteins set the gold standard for performing important functions, including catalyzing demanding reactions under mild conditions. Designing artificial metalloenzymes (ArMs) to catalyze abiological reactions has been a major endeavor for many years, but most ArM activities are far below those of native enzymes, making them unsuitable for most pratical applications. A critical step to advance the field is to fundamentally understand what it takes to not only confer but also fine-tune ArM activities so they match those of native enzymes. Indeed, only once we can freely modulate ArM activity to rival (or surpass!) natural enzymes can the potential of ArMs be fully realized. A key to unlocking ArM potential is the observation that one metal primary coordination sphere can display a range of functions and levels of activity, leading to the realization that secondary coordination sphere (SCS) interactions are critically important. However, SCS interactions are numerous, long-range, and weak, making them very difficult to reproduce in ArMs. Furthermore, natural enzymes are tied to a small set of biologically available functional moieties from canonical amino acids and physiologically available metal ions and metallocofactors, severely limiting the chemical space available to probe and tune ArMs. We summarize the use of unnatural amino acids (UAAs) and non-native metal ions and metallocofactors by our group and our collaborators to probe and modulate ArM functions. We incorporated isostructural UAAs in a type 1 copper (T1Cu) protein azurin to provide conclusive evidence that axial ligand hydrophobicity is a major determinant of T1Cu redunction potential (E°'). Closely related work from other groups are also discussed. We also probed the role of protein backbone interactions that cannot be altered by standard mutagenesis by replacing the peptide bond with an ester linkage. We used insight gained from these studies to tune the E°' of azurin across the entire physiological range, the broadest range ever achieved in a single metalloprotein. Introducing UAA analogues of Tyr into ArM models of heme-copper oxidase (HCO) revealed a linear relationship between pK a , E°', and activity. We also substituted non-native hemes and non-native metal ions for their native equivalents in these models to resolve several issues that were intractable in native HCOs and the closely related nitric oxide reductases, such as their roles in modulating substrate affinity, electron transfer rate, and activity. We incorporated abiological cofactors such as ferrocene and Mn(salen) into azurin and myoglobin, respectively, to stabilize these inorganic and organometallic compounds in water, confer abiological functions, tune their E°' and activity through SCS interactions, and show that the approach to metallocofactor anchoring and orientation can tune enantioselectivity and alter function. Replacing Cu in azurin with non-native Fe or Ni can impart novel activities, such as superoxide reduction and C–C bond formation. While progress was made, we have identified only a small fraction of the interactions that can be generally applied to ArMs to fine-tune their functions. Because SCS interactions are subtle and heavily interconnected, it has been difficult to characterize their effects quantitatively. It is vital to develop spectroscopic and computational techniques to detect and quantify their effects in both resting states and catalytic intermediates.
A comparative study of the 1 H and 14 N hyperfine interactions between the Cu A site in an engineered Cu A center in azurin (WT-Cu A Az) and its His120Gly variant (H120G-Cu A Az) using the two-dimensional ESEEM technique, HYSCORE, is reported. HYSCORE spectroscopy has clarified conflicting results in previous electron paramagnetic resonance (EPR) and electron nuclear double resonance (ENDOR) studies and found clear differences between the two Cu A azurins. Specifically, a hyperfine coupling A N⊥ of 15.3 MHz was determined for the first time from the frequencies of double-quantum transitions of 14 N histidine nitrogens coordinated to Cu A in WT-Cu A Az. In contrast, such coupling was not observed in the spectra of H120G-Cu A Az, indicating at least a several megahertz increase in A N⊥ for the coordinated nitrogen in this variant. In addition, 14 N HYSCORE spectra of WT-Cu A Az show interaction with only one type of weakly coupled nitrogen assigned to the remote N ε atom of coordinated imidazole residues based on the quadrupole coupling constant (e 2 Qq/4h) of ~0.4 MHz. The spectrum of H120G-Cu A Az resolves additional features typical for backbone peptide nitrogens with larger e 2 Qq/4h values of ~0.7 MHz. Hyperfine couplings with these nitrogens vary between ~0.4 and 0.7 MHz. In addition, the two resolved cross-peaks from C β protons in H120G-Cu A Az display only ~1 MHz shifts relative to the corresponding peaks in WT-Cu A Az. Finally, these new findings have provided the first experimental evidence of the previous density functional theory analysis that predicted changes in the delocalized electron spin population of ~0.02–0.03 (i.e., ~10%) on copper and sulfur atoms of the Cu A center in H120 variants relative to WT-Cu A Az and resolved contradicting results between EPR and ENDOR studies of the valence distribution in Cu A Az and its variants.