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Lu, Lu

Publications and source records attributed to Lu, Lu.

At least 55 records · Page 3

Phase-change heterostructure enables ultralow noise and drift for memory operation

Artificial intelligence and other data-intensive applications have escalated the demand for data storage and processing. New computing devices, such as phase-change random access memory (PCRAM)–based neuro-inspired devices, are promising options for breaking the von Neumann barrier by unifying storage with computing in memory cells. However, current PCRAM devices have considerable noise and drift in electrical resistance that erodes the precision and consistency of these devices. We designed a phase-change heterostructure (PCH) that consists of alternately stacked phase-change and confinement nanolayers to suppress the noise and drift, allowing reliable iterative RESET and cumulative SET operations for high-performance neuro-inspired computing. Our PCH architecture is amenable to industrial production as an intrinsic materials solution, without complex manufacturing procedure or much increased fabrication cost.

Science & Technology - Other Topics↗

fPINNs: Fractional Physics-Informed Neural Networks

Physics-informed neural networks (PINNs), introduced, are effective in solving integer-order partial differential equations (PDEs) based on scattered and noisy data. PINNs employ standard feedforward neural networks (NNs) with the PDEs explicitly encoded into the NN using automatic differentiation, while the sum of the mean-squared PDE residuals and the mean-squared error in initial-boundary conditions is minimized with respect to the NN parameters. Here we extend PINNs to fractional PINNs (fPINNs) to solve space-time fractional advection-diffusion equations (fractional ADEs), and we study systematically their convergence, hence explaining both fPINNs and PINNs for the first time. Specifically, we demonstrate their accuracy and effectiveness in solving multidimensional forward and inverse problems with forcing terms whose values are only known at randomly scattered spatio-temporal coordinates (black-box (BB) forcing terms). A novel element of the fPINNs is the hybrid approach that we introduce for constructing the residual in the loss function using both automatic differentiation for the integer-order operators and numerical discretization for the fractional operators. This approach bypasses the difficulties stemming from the fact that automatic differentiation is not applicable to fractional operators because the standard chain rule in integer calculus is not valid in fractional calculus. To discretize the fractional operators, we employ the Grünwald--Letnikov (GL) formula in one-dimensional fractional ADEs and the vector GL formula in conjunction with the directional fractional Laplacian in two- and three-dimensional fractional ADEs. We first consider the one-dimensional fractional Poisson equation and compare the convergence of the fPINNs against the finite difference method (FDM). We present the solution convergence using both the mean L 2 error as well as the standard deviation due to sensitivity to NN parameter initializations. Using different GL formulas we observe first-, second-, and third-order convergence rates for small size training sets but the error saturates for larger training sets. We explain these results by analyzing the four sources of numerical errors due to discretization, sampling, NN approximation, and optimization. The total error decays monotonically (below 10 –5 for a third-order GL formula) but it saturates beyond that point due to the optimization error. We also analyze the relative balance between discretization and sampling errors and observe that the sampling size and the number of discretization points (auxiliary points) should be comparable to achieve the highest accuracy. As we increase the depth of the NN up to certain value, the mean error decreases and the standard deviation increases, whereas the width has essentially no effect unless its value is either too small or too large. We next consider time-dependent fractional ADEs and compare white-box (WB) and BB forcing. We observe that for the WB forcing, our results are similar to the aforementioned cases; however, for the BB forcing fPINNs outperform FDM. Subsequently, we consider multidimensional time-, space-, and space-time-fractional ADEs using the directional fractional Laplacian and we observe relative errors of 10 –3 ~ 10 –4 . Lastly, we solve several inverse problems in one, two, and three dimensions to identify the fractional orders, diffusion coefficients, and transport velocities and obtain accurate results given proper initializations even in the presence of significant noise.

97 MATHEMATICS AND COMPUTING↗

Improved learning from data competitions through strategic design of training and test data sets

Leveraging the depth and breadth of solutions generated through crowdsourcing can be a powerful accelerator to method development for high consequence problems. While data science competitions have become quite popular and prevalent, particularly in supervised learning formats, their implementations by the host are highly variable. Without careful planning, a supervised learning competition is vulnerable to overfitting, where the winning solutions are so closely tuned to the particular set of provided data that they cannot generalize to the general underlying problem of interest to the host. This paper outlines important considerations for strategically designing relevant and informative data sets to maximize the learning outcome from hosting a competition. These include: precisely defining the scope of the problem, encouraging participation by competitors from diverse technical backgrounds, specifying the most interesting solution space in order to encourage improvement and distinguish between competitors, strategically generating data sets that enable testing for interpolation and extrapolation to new scenarios of interest, leveraging design of experiment principles for strategic data design while preventing unintentional artifacts in the competition data set that an algorithm could exploit without addressing the real problem of interest, and carefully designing the leaderboard scoring metric to select top solutions that exactly match the overall competition goals. The methods are illustrated with a recently completed competition in the context of urban radiological search to evaluate algorithms capable of detecting, identifying, and locating radioactive materials. Simulated data were used in the urban search competition. Ideas for using measured real data in competitions are also suggested

97 MATHEMATICS AND COMPUTING↗

QP Statistics Spotlight: Practical versus Statistical Priorities

Randomization during data collection in a designed experiment is an effective strategy for reducing system bias and ensuring independent observations1, but at what cost should it be fully implemented? We recently encountered a scenario that highlights an important aspect of collaboration2 between statisticians, scientists and engineers – the idea of compromise for the sake of achieving wins for all team members. In a multi-million-dollar experiment with a fixed amount of time on the test equipment, each experimental run involved resetting the input values and then waiting for the continuous process to reach a new equilibrium. For example, the temperature of the furnace could be reset, but it takes some time for the test chamber to reach the new temperature and rest at that temperature for a while until all components in the chamber settle at that new setting. Similarly, a critical gas flow component also required a settling period before data could be collected that would be representative of that input setting value. In all, the experiment involved 5 factors, where 4 of the 5 were time-consuming and costly to adjust, with the duration of time needed to reach new equilibrium being dependent on how far the previous setting was from the new one for the combination of these 4 factors. For example, changing from 150° to 200° would reach equilibrium faster than changing from 100° to 200°.

97 MATHEMATICS AND COMPUTING↗

Unbiased solar H 2 production with current density up to 23 mA cm -2 by Swiss-cheese black Si coupled with wastewater bioanode

Unbiased photoelectrochemical hydrogen production with high efficiency and durability is highly desired for solar energy storage. Here, we report a microbial photoelectrochemical (MPEC) system that demonstrated superior performance when equipped with bioanodes and black silicon photocathode with a unique “Swiss-cheese” interface. The MPEC utilizes the chemical energy embedded in wastewater organics to boost solar H 2 production, which overcomes barriers on anode H 2 O oxidation. Without any bias, the MPEC generates a record photocurrent (up to 23 mA cm -2 ) and retains prolonged stability for over 90 hours with high Faradaic efficiency (96–99%). The calculated turnover number for MoS x catalyst during a 90 h period is 495 471 with an average frequency of 1.53 s -1 . The system replaced pure water on the anode with actual wastewater and achieved waste organic removal up to 16 kg COD m -2 photocathode per day. Cost credits from concurrent wastewater treatment and low-cost design make photoelectrochemical H 2 production practical for the first time.

08 HYDROGEN↗

How to Host An Effective Data Competition: Statistical Advice for Competition Design and Analysis

Data competitions rely on real-time leaderboards to rank competitor entries and stimulate algorithm improvement. While such competitions have become quite popular and prevalent, particularly in supervised learning formats, their implementations by the host are highly variable. Without careful planning, a supervised learning competition is vulnerable to overfitting, where the winning solutions are so closely tuned to the particular set of provided data that they cannot generalize to the underlying problem of interest to the host. This paper outlines some important considerations for strategically designing relevant and informative data sets to maximize the learning outcome from hosting a competition based on our experience. It also describes a postcompetition analysis that enables robust and efficient assessment of the strengths and weaknesses of solutions from different competitors, as well as greater understanding of the regions of the input space that are well-solved. The postcompetition analysis, which complements the leaderboard, uses exploratory data analysis and generalized linear models (GLMs). The GLMs not only expand the range of results we can explore, they also provide more detailed analysis of individual subquestions including similarities and differences between algorithms across different types of scenarios, universally easy or hard regions of the input space, and different learning objectives. When coupled with a strategically planned data generation approach, the methods provide richer and more informative summaries to enhance the interpretation of results beyond just the rankings on the leaderboard. The methods are illustrated with a recently completed competition to evaluate algorithms capable of detecting, identifying, and locating radioactive materials in an urban environment.

97 MATHEMATICS AND COMPUTING↗

Rejoinder

We would like to thank all of the discussants for their thoughtful and insightful comments. We heartily agree with Willis Jensen’s remark that the collection of views from multiple different perspectives possible with a discussion paper has added greatly to the overall contribution. Roger Hoerl compactly and eloquently summarized our thoughts about the role of statisticians on teams: “to objectively lead a team of subject matter experts through the minefield of problem resolution.” We agree with Benjamin Slade that this leadership role can be achieved either through formally leading the team or by being an active, engaged member of the team with an eye on the overall goals of the team and impacting the structure of the decision-making process. Hoerl also highlights what solutions interdisciplinary teams should be seeking – namely those that are “the best business … or scientific solution[s], rather than the best statistical solutions.” If this is how we define the objective of the team’s problem-solving or decision-making efforts, then establishing ourselves as fully-included team members or even working towards leading the team efforts should become easier.

97 MATHEMATICS AND COMPUTING↗

Effective interdisciplinary collaboration between statisticians and other subject matter experts

Progress and innovative solutions to challenging problems often come at the intersection of multiple disciplines. Statisticians frequently are presented with opportunities to participate on or lead interdisciplinary teams, where how well their contributions are received is a function of their effectiveness as collaborators. In this article, we outline six fundamentals for effective collaboration: respect, shared common goals, trust, commitment, intercommunication, and execution. We focus on how these core aspects of a successful collaboration can be encouraged by statisticians. Through an example, we illustrate how problems can arise when some of the key components are missing and what strategies can be used to mitigate problems. Lastly, we describe how early career statisticians can work to improve their collaboration skills to improve their impact on teams with diverse backgrounds.

42 ENGINEERING↗

Selecting a near-optimal design for multiple criteria with improved robustness to different user priorities

In a decision-making process, relying on only one objective can often lead to oversimplified decisions that ignore important considerations. Incorporating multiple, and likely competing, objectives is critical for balancing trade-offs on different aspects of performance. When multiple objectives are considered, it is often hard to make a precise decision on how to weight the different objectives when combining their performance for ranking and selecting designs. We show that there are situations when selecting a design with near-optimality for a broad range of weight combinations of the criteria is a better test selection strategy compared with choosing a design that is strictly optimal under very restricted conditions. Here, we propose a new design selection strategy that identifies several top-ranked solutions across broad weight combinations using layered Pareto fronts and then selects the final design that offers the best robustness to different user priorities. This method involves identifying multiple leading solutions based on the primary objectives and comparing the alternatives using secondary objectives to make the final decision. We focus on the selection of screening designs because they are widely used both in industrial research, development, and operational testing. The method is illustrated with an example of selecting a single design from a catalog of designs of a fixed size. However, the method can be adapted to more general designed experiment selection problems that involve searching through a large design space.

97 MATHEMATICS AND COMPUTING↗

Inhibition of GLUTs by WZB117 mediates apoptosis in blood-stage Plasmodium parasites by breaking redox balance

Like tumour cells, during intraerythrocytic stage, Plasmodium-infected erythrocytes rely completely on glucose absorption from the blood circulation for energy metabolism. Glucose is taken up by glucose transporter 1 (GLUT1) on human red blood cells (RBCs) and glucose transporter 4 (GLUT4) on rodent RBCs. Blood-stage parasites grow rapidly; therefore, infected red blood cells (iRBCs) need much more glucose for energy. In previous study, WZB117 (2-fluoro-6-(m-hydroxybenzoyloxy) phenyl m-hydroxybenzoate) inhibits GLUT1 by binding the exofacial sugar-binding site and inhibits the insulin-sensitive GLUT4 with greater potency than its inhibition of either GLUT1 or GLUT3. In our study, WZB117 effectively inhibit the growth of blood-stage parasites. Mechanistically, WZB117 inhibited the activity of GLUTs and perturbed the glycolysis. Therefore, decreasing the glucose level increased the redox oxidative species (ROS) level and induced oxidative stress and apoptosis. The spleen can more easily clear apoptopic iRBCs than nonapoptotic iRBCs, effectively relieving hepatosplenomegaly. These findings provide important insights into the crucial role of glucose transporters (GLUTs) in Plasmodium glucose uptake during intra-erythrocytic stage, as the inhibition of GLUTs block Plasmodium infection during the erythrocytic stage.

60 APPLIED LIFE SCIENCES↗

ABT-199-mediated inhibition of Bcl-2 as a potential therapeutic strategy for nasopharyngeal carcinoma

Highlights: • ABT-199 can effectively induce nasopharyngeal carcinoma cell apoptosis free of cytotoxic agent. • ABT-199 can cause elevated Noxa expression in nasopharyngeal carcinoma. • Dual Mcl-1/Bcl-2 inhibition with ABT-199 and Mcl-1 inhibitor S63845 works synergistically and demonstrates promise for future NPC treatment. Aberrant overexpression of Bcl-2 protein has been detected in 80% of nasopharyngeal carcinoma (NPC), and Bcl-2 family proteins are implicated in both NPC oncogenesis and chemotherapy resistance. Previous studies have shown that while treatment of NPC cells with Bcl-2 family inhibitors alone is rarely effective, concomitant treatment with a cytotoxic reagent such as cisplatin can increase efficacy through a synergistic effect. The aim of the current work was to determine how we might increase the efficacy of Bcl-2 family inhibitors in the absence of cytotoxic reagents, which are associated with negative side effect profiles.

60 APPLIED LIFE SCIENCES↗

Mechanics of diseased red blood cells in human spleen and consequences for hereditary blood disorders

In red blood cell (RBC) diseases, the spleen contributes to anemia by clearing the damaged RBCs, but its unique ability to mechanically challenge RBCs also poses the risk of inducing other pathogenic effects. We have analyzed RBCs in hereditary spherocytosis (HS) and hereditary elliptocytosis (HE), two typical examples of blood disorders that result in membrane protein defects in RBCs. We use a two-component protein-scale RBC model to simulate the traversal of the interendothelial slit (IES) in the human spleen, a stringent biomechanical challenge on healthy and diseased RBCs that cannot be directly observed in vivo. In HS, our results confirm that the RBC loses surface due to weakened cohesion between the lipid bilayer and the cytoskeleton and reveal that surface loss may result from vesiculation of the RBC as it crosses IES. In HE, traversing IES induces sustained elongation of the RBC with impaired elasticity and fragmentation in severe disease. Our simulations thus suggest that in inherited RBC disorders, the spleen not only filters out pathological RBCs but also directly contributes to RBC alterations. These results provide a mechanistic rationale for different clinical outcomes documented following splenectomy in HS patients with spectrin-deficient and ankyrin-deficient RBCs and offer insights into the pathogenic role of human spleen in RBC diseases.

60 APPLIED LIFE SCIENCES↗

Understanding the Twisted Structure of Amyloid Fibrils via Molecular Simulations

According to the article, accumulation and aggregation of amyloid are associated with the pathogenesis of many human diseases, such as Alzheimer’s disease and Type 2 diabetes mellitus. Therefore, a quantitative understanding of the molecular mechanisms causing different aggregated structures and biomechanical properties of amyloid fibrils could shed some light into the progression of these diseases. In this work, we develop coarse-grained molecular dynamics (CGMD) models to simulate the dynamic self-assembly of two types of amyloids (amylin and amyloid β (Aβ)). We investigate the structural and mechanical properties of different types of aggregated amyloid fibrils. Our simulations demonstrate that amyloid fibrils could result from longitudinal growth of protofilament bundles, confirming one of the hypotheses on the fibril formation. In addition, we find that the persistence length of amylin fibrils increases concurrently with their pitch length, suggesting that the bending stiffness of amylin fibrils becomes larger when the amylin fibrils are less twisted. Similar results are observed for Aβ fibrils. These findings quantify the connection between the structural and the biomechanical properties of the fibrils. The CGMD models developed in this work can be potentially used to examine efficacy of anti-aggregation drugs, which could help in developing new treatments.

Chemistry↗

Rejoinder to “Graphics to facilitate informative discussion and team decision-making”

We would like to thank Dr Dae-Heung Jang and Dr Jennifer Van Mullekom for their thoughtful discussions. We are encouraged that they share our vision for highlighting and expanding the role of graphics for improving team discussion and decision-making. Here we would like to respond to several comments that they made in their discussions: (1) how the availability of the third dimension in graphics can improve team members' ability to properly visualize and connect with the data, (2) the importance of developing dynamic and interactive graphics to allow exploration of questions as they emerge during the discussion, (3) the role of process and relationships in helping reach good decisions based on the developed objectives, and (4) the benefits of building a body of case studies on which those new to the methods can draw understanding.

99 GENERAL AND MISCELLANEOUS↗

Spatial associations between social groups and ozone air pollution exposure in the Beijing urban area

Highlights: • Greater percentages of persons living alone and migrants were associated with higher O{sub 3} exposure. • Social groups divided by Hukou status had distinct spatial distributions in the Beijing urban area. • Migrants bore a double burden of social deprivation and O{sub 3} exposure due to city development planning and the Hukou system. • Areas with greater percentages of seniors had lower O{sub 3} exposure but higher NO{sub 2} exposure. Few studies have linked social factors to air pollution exposure in China. Unlike the race or minority concepts in western countries, the Hukou system (residential registration system) is a fundamental reason for the existence of social deprivation in China. To assess the differences in ozone (O{sub 3}) exposure among social groups, especially groups divided by Hukou status, we assigned estimates of O{sub 3} exposure to the latest census data of the Beijing urban area using a kriging interpolation model. We developed simultaneous autoregressive (SAR) models that account for spatial autocorrelation to identify the associations between O{sub 3} exposure and social factors. Principal component regression was used to control the multicollinearity bias as well as explore the spatial structure of the social data. The census tracts (CTs) with higher proportions of persons living alone and migrants with non-local Hukou were characterized by greater exposure to ambient O{sub 3}. The areas with greater proportions of seniors had lower O{sub 3} exposure. The spatial distribution patterns were similar among variables including migrants, agricultural population and household separation (population status with separation between Hukou and actual residences), which fit the demographic characteristics of the majority of migrants. Migrants bore a double burden of social deprivation and O{sub 3} pollution exposure due to city development planning and the Hukou system.

54 ENVIRONMENTAL SCIENCES↗

Cytoskeleton Remodeling Induces Membrane Stiffness and Stability Changes of Maturing Reticulocytes

Reticulocytes, the precursors of erythrocytes, undergo drastic alterations in cell size, shape, and deformability during maturation. Experimental evidence suggests that young reticulocytes are stiffer and less stable than their mature counterparts; however, the underlying mechanism is yet to be fully understood. Here, we develop a coarse-grained molecular-dynamics reticulocyte membrane model to elucidate how the membrane structure of reticulocytes contributes to their particular biomechanical properties and pathogenesis in blood diseases. First, we show that the extended cytoskeleton in the reticulocyte membrane is responsible for its increased shear modulus. Subsequently, we quantify the effect of weakened cytoskeleton on the stiffness and stability of reticulocytes, via which we demonstrate that the extended cytoskeleton along with reduced cytoskeleton connectivity leads to the seeming paradox that reticulocytes are stiffer and less stable than the mature erythrocytes. Our simulation results also suggest that membrane budding and the consequent vesiculation of reticulocytes can occur independently of the endocytosis-exocytosis pathway, and thus, it may serve as an additional means of removing unwanted membrane proteins from reticulocytes. Finally, we find that membrane budding is exacerbated when the cohesion between the lipid bilayer and the cytoskeleton is compromised, which is in accord with the clinical observations that erythrocytes start shedding membrane surface at the reticulocyte stage in hereditary spherocytosis. Taken together, our results quantify the stiffness and stability change of reticulocytes during their maturation and provide, to our knowledge, new insights into the pathogenesis of hereditary spherocytosis and malaria.

Biophysics↗