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Liu, Yifei

Publications and source records attributed to Liu, Yifei.

The seventh blind test of crystal structure prediction: structure generation methods

A seventh blind test of crystal structure prediction was organized by the Cambridge Crystallographic Data Centre featuring seven target systems of varying complexity: a silicon and iodine-containing molecule, a copper coordination complex, a near-rigid molecule, a cocrystal, a polymorphic small agrochemical, a highly flexible polymorphic drug candidate, and a polymorphic morpholine salt. In this first of two parts focusing on structure generation methods, many crystal structure prediction (CSP) methods performed well for the small but flexible agrochemical compound, successfully reproducing the experimentally observed crystal structures, while few groups were successful for the systems of higher complexity. A powder X-ray diffraction (PXRD) assisted exercise demonstrated the use of CSP in successfully determining a crystal structure from a low-quality PXRD pattern. The use of CSP in the prediction of likely cocrystal stoichiometry was also explored, demonstrating multiple possible approaches. Crystallographic disorder emerged as an important theme throughout the test as both a challenge for analysis and a major achievement where two groups blindly predicted the existence of disorder for the first time. Additionally, large-scale comparisons of the sets of predicted crystal structures also showed that some methods yield sets that largely contain the same crystal structures.

Chemistry↗

The seventh blind test of crystal structure prediction: structure ranking methods

A seventh blind test of crystal structure prediction has been organized by the Cambridge Crystallographic Data Centre. The results are presented in two parts, with this second part focusing on methods for ranking crystal structures in order of stability. The exercise involved standardized sets of structures seeded from a range of structure generation methods. Participants from 22 groups applied several periodic DFT-D methods, machine learned potentials, force fields derived from empirical data or quantum chemical calculations, and various combinations of the above. In addition, one non-energy-based scoring function was used. Results showed that periodic DFT-D methods overall agreed with experimental data within expected error margins, while one machine learned model, applying system-specific AIMnet potentials, agreed with experiment in many cases demonstrating promise as an efficient alternative to DFT-based methods. For target XXXII, a consensus was reached across periodic DFT methods, with consistently high predicted energies of experimental forms relative to the global minimum (above 4 kJ mol −1 at both low and ambient temperatures) suggesting a more stable polymorph is likely not yet observed. The calculation of free energies at ambient temperatures offered improvement of predictions only in some cases (for targets XXVII and XXXI). Several avenues for future research have been suggested, highlighting the need for greater efficiency considering the vast amounts of resources utilized in many cases.

Chemistry↗

Uncovering the phonon spectra and lattice dynamics of plastically deformable InSe van der Waals crystals

Stacking two-dimensional (2D) van der Waals (vdW) materials in a layered bulk structure provides an appealing platform for the emergence of exotic physical properties. As a vdW crystal with exceptional plasticity, InSe offers the opportunity to explore various effects arising from the coupling of its peculiar mechanical behaviors and other physical properties. Here, we employ neutron scattering techniques to investigate the correlations of plastic interlayer slip, lattice anharmonicity, and thermal transport in InSe crystals. Not only are the interlayer slip direction and magnitude well captured by shifts in the Bragg reflections, but we also observe a deviation from the expected Debye behaviour in the heat capacity and lattice thermal conductivity. Combining the experimental data with first-principles calculations, we tentatively attribute the observed evidence of strong phonon-phonon interactions to a combination of a large acoustic-optical frequency resonance and a nesting effect. These findings correlate the macroscopic plastic slip and the microscopic lattice dynamics, providing insights into the mechano-thermo coupling and modulation in 2D vdW materials.

36 MATERIALS SCIENCE↗

Synthesis Gas Conversion over Rh/Mo Catalysts Prepared by Atomic Layer Deposition

Conversion of synthesis gas into value-added products, including oxygenates and C 2+ hydrocarbons, was studied at 523 K, 580 psi, and a 1/1 CO/H 2 ratio over Rh catalysts on catalyst supports prepared by atomic layer deposition (ALD) of molybdenum and tungsten species on silica. The reactivity measurements showed that coating the silica support with molybdenum and tungsten species helped to suppress the methane selectivity and promote the overall conversion rate. When the silica support was coated with five cycles of β-Mo 2 C, the methane selectivity decreased from 32% (1% Rh/SiO 2 ) to 13% (1% Rh/5c-Mo 2 C/SiO 2 ), and the overall product rate increased 33 times from 0.4 to 12.7 mmol min –1 (g of Rh) –1 . CO-FTIR results showed that supporting Rh on silica led to the formation of Rh(211) facets, which favored the formation of methane and had a higher CO conversion rate. Rh on a MoO 3 /SiO 2 support prepared by ALD was found to be the most active catalyst while maintaining the suppression of methane selectivity, showing an overall rate ~60 times higher than that of 1% Rh/SiO 2 . A reaction pathway is proposed, in which hydrogenation steps are promoted most significantly by Mo and W species, followed by promotion of CO insertion steps for ethanol synthesis and C–C coupling steps for hydrocarbon formation. CO-FTIR results showed that 1% Rh/MoO 3 /SiO 2 has the highest proportion of gem-dicarbonyl adsorption sites and the lowest proportion of bridge-bonded CO adsorption sites. As a result, the rate of methanol formation shows a positive correlation with the number of sites that form gem-dicarbonyl species.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Synthesis Gas Conversion over Rh-Mn-W x C/SiO 2 Catalysts Prepared by Atomic Layer Deposition

The catalytic conversion of synthesis gas to value-added oxygenates and light hydrocarbons was studied here on Rh and Rh–Mn clusters on tungsten carbide-overcoated silica (W x C/SiO 2 ) at 523 K, 580 psi, and CO/H 2 = 1/1. The W x C-modified SiO 2 support was prepared by the overcoating of WO x on SiO 2 using atomic layer deposition (ALD) followed by carburization. The reactivities of Rh/W x C/SiO 2 catalysts with varying number of ALD cycles (number of cycles = 2, 5, 10, 20, and 30) were measured and showed that 5 ALD cycles of WxC suppressed the formation of methane. All W x C-modified catalysts showed enhancement in selectivity toward methanol and ethanol through CO hydrogenation and acetaldehyde hydrogenation, respectively. These catalysts also improved the overall turnover frequency (TOF). The addition of Mn species further promoted the activity and the selectivity toward ethanol and C 2+ hydrocarbons, especially light alkenes. The best performing Rh-2Mn/5cycle-W x C/SiO 2 catalyst (Rh:Mn molar ratio = 1:2) achieved 84.7% selectivity toward valuable oxygenates and C 2+ hydrocarbons with a ratio of alkenes to alkanes equal to 1.7, compared to Rh/SiO 2 which exhibited 80.4% selectivity toward the products aforementioned with a ratio of 0.5. The overall TOF was 20 times higher than that over Rh/SiO 2 (i.e., 5.6 × 10 –2 s –1 vs 2.9 × 10 –3 s –1 ). X-ray diffraction revealed that the existence of W 2 C, which was the dominant phase in Rh/5cycle-W x C/SiO 2 , favored the suppression of methane and enhanced the production of alcohols and C 2+ hydrocarbons compared to the WC support. Density functional theory calculations for Rh 19 , Rh 31 , and Rh 37 clusters on various WC surfaces suggested that the shape of Rh clusters is condition dependent and subject to H 2 pressure. The C- and O- binding energies on various sites for the clusters were used with scaling relations to probe their catalytic activity. With the use of this approach, the increase in the O binding energy when moving from the SiO 2 -supported Rh 37 cluster to the WC-supported cluster leads to an increase in the activity of Rh/W x C/SiO 2 at the expense of the reduction in the number of sites that are selective toward C 2 oxygenates.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

A universal mini-vector and an annealing of PCR products (APP)-based cloning strategy for convenient molecular biological manipulations

Currently, the most widely used strategies for molecular cloning are sticky-end ligation-based cloning, TA cloning, blunt-end ligation-based cloning and ligase-independent cloning. In this study we have developed a novel mini-vector pANY1 which can simultaneously meet the requirements of all these cloning strategies. In addition, the selection of appropriate restriction digestion sites is difficult in some cases because of the presence of internal sites. In this study, an annealing of PCR products (APP)-based sticky-end cloning strategy was introduced to avoid this issue. Additionally, false positives occur during molecular cloning, which increases the workload of isolating positive clones. The plasmid pANY1 contains a ccdB cassette between multiple cloning sites, which efficiently avoids these false positives. Therefore, this mini-vector should serve as a useful tool with wide applications in biosciences, agriculture, food technologies, etc.

60 APPLIED LIFE SCIENCES↗

Catalysts synthesized by selective deposition of Fe onto Pt for the water-gas shift reaction

FePt bimetallic catalysts with intimate contact between the two metals were synthesized by controlled surface reactions (CSR) of (cyclohexadiene)iron tricarbonyl with hydrogen-treated supported Pt nanoparticles. Adsorption of the iron precursor on a Pt/SiO2 catalyst was studied, showing that the Fe loading could be increased by performing multiple CSR cycles, and the efficiency of this process was linked to the renewal of adsorption sites by a reducing pretreatment. The catalytic activity of these bimetallic catalysts for the water gas shift reaction was improved due to promotion by iron, likely linked to H2O activation on FeOx species at or near the Pt surface, mostly in the (II) oxidation state.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

miR-1236-3p suppresses the migration and invasion by targeting KLF8 in lung adenocarcinoma A549 cells

MicroRNAs (miRNAs) have a great effect on regulating tumor cell migration, invasion, proliferation and prognosis. However, the mechanism of miR-1236-3p on regulating carcinogenesis is still unknown. In this study, the expression of miR-1236-3p was lower in lung adenocarcinoma tissues than that in adjacent normal tissue. In lung adenocarcinoma A549 cell line, miR-1236-3p decreased ability of cell invasion and migration, furthermore, we show that KLF8 is targeted by miR-1236-3p, and expression of miR-1236-3p is negatively correlated with KLF8. Additionally, miR-1236-3p suppressed the expression of KLF8 and EMT (epithelial mesenchymal transition)-related genes. Overexpression of KLF8 can promote EMT-related genes at protein level. In conclusion, our results support the fact that miR-1236-3p acts as a tumor inhibitor in lung adenocarcinoma by suppressing the activity of KLF8, and it may play a critical role in the diagnosis and treatment of lung cancer.

60 APPLIED LIFE SCIENCES↗

Synthesis Gas Conversion over Rh-Based Catalysts Promoted by Fe and Mn

Rh/SiO2 catalysts promoted with Fe and Mn are selective for synthesis gas conversion to oxygenates and light hydrocarbons at 523 K and 580 psi. Selective anchoring of Fe and Mn species on Rh nanoparticles was achieved by controlled surface reactions and was evidenced by ultraviolet–visible absorption spectroscopy, scanning transmission electron microscopy, and inductively coupled plasma absorption emission spectroscopy. The interaction between Rh and Fe promotes the selective production of ethanol through hydrogenation of acetaldehyde and enhances the selectivity toward C2 oxygenates, which include ethanol and acetaldehyde. The interaction between Rh and Mn increases the overall reaction rate and the selectivity toward C2+ hydrocarbons. The combination of Fe and Mn on Rh/SiO2 results in trimetallic Rh-Fe-Mn catalysts that surpass the performance of their bimetallic counterparts. The highest selectivities toward ethanol (36.9%) and C2 oxygenates (39.6%) were achieved over the Rh-Fe-Mn ternary system with a molar ratio of 1:0.15:0.10, as opposed to the selectivities obtained over Rh/SiO2, which were 3.5% and 20.4%, respectively. The production of value-added oxygenates and C2+ hydrocarbons over this trimetallic catalyst accounted for 55% of the total products. X-ray photoelectron spectroscopy measurements suggest that significant fractions of the Fe and Mn species exist as metallic iron and manganese oxides on the Rh surface upon reduction. These findings are rationalized by density functional theory (DFT) calculations, which reveal that the exact state of metals on the surfaces is condition-dependent, with Mn present as Mn(I) and Mn(II) oxide on the Rh (211) step edges and Fe present as Fe(I) oxide on the step edge and metallic subsurface iron on both Rh steps and terraces. CO Fourier transform infrared spectroscopy and DFT calculations suggest that the binding of CO to Rh (211) step edges modified by Fe and/or manganese oxide is altered in comparison to CO adsorption on a clean Rh (211) surface. These results suggest that Mn2Ox species and Fe and Fe2O modify bonding at Rh step edges and shift reaction selectivity away from CH4.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗