Engineering topics
Laanait, Nouamane
Publications and source records attributed to Laanait, Nouamane.
Evaluating Robust Entanglement on a Trapped Ion Platform
We present proof of principle results for evaluating an entanglement volumetric benchmark [1] on trapped ion platforms. The benchmark quantifies the robustness of multipartite and bipartite entanglement using stabilizer measurements and witness functions. Each n-qubit graph state is prepared and used to evaluate n state-specific stabilizer strings. These stabilizer measurements are used to evaluate entanglement witness functions. The entanglement benchmark defines families of graph states associated with an initial sub-graph of the hardware qubit connectivity - with all-to-all connectivity, trapped ion systems provide a flexibility in the choice of this initial graph, and this will affect the associated family. In this work, we present results targeting several classes of entangled states: 1) 1-D cluster states, 2) n-qubit GHZ states, and 3) cycle graph states. These states have been found in the literature as standard hardware benchmarks, and have connections to many near-term applications.
Accelerating Collective Communication in Data Parallel Training across Deep Learning Frameworks
This work develops new techniques within Horovod, a generic communication library supporting data parallel training across deep learning frameworks. In particular, we improve the Horovod control plane by implementing a new coordination scheme that takes advantage of the characteristics of the typical data parallel training paradigm, namely the repeated execution of collectives on the gradients of a fixed set of tensors. Using a caching strategy, we execute Horovod’s existing coordinator-worker logic only once during a typical training run, replacing it with a more efficient decentralized orchestration strategy using the cached data and a global intersection of a bitvector for the remaining training duration. Next, we introduce a feature for end users to explicitly group collective operations, enabling finer grained control over the communication buffer sizes. To evaluate our proposed strategies, we conduct experiments on a world-class supercomputer — Summit. We compare our proposals to Horovod’s original design and observe 2x performance improvement at a scale of 6000 GPUs; we also compare them against tf.distribute and torch.DDP and achieve 12% better and comparable performance, respectively, using up to 1536 GPUs; we compare our solution against BytePS in typical HPC settings and achieve about 20% better performance on a scale of 768 GPUs. Finally, we test our strategies on a scientific application (STEMDL) using up to 27,600 GPUs (the entire Summit) and show that we achieve a near-linear scaling of 0.93 with a sustained performance of 1.54 exaflops (with standard error +- 0.02) in FP16 precision.
Scalable balanced training of conditional generative adversarial neural networks on image data
Here, we propose a distributed approach to train deep convolutional generative adversarial neural network (DC-CGANs) models. Our method reduces the imbalance between generator and discriminator by partitioning the training data according to data labels, and enhances scalability by performing a parallel training where multiple generators are concurrently trained, each one of them focusing on a single data label. Performance is assessed in terms of inception score, Fréchet inception distance, and image quality on MNIST, CIFAR10, CIFAR100, and ImageNet1k datasets, showing a significant improvement in comparison to state-of-the-art techniques to training DC-CGANs. Weak scaling is attained on all the four datasets using up to 1000 processes and 2000 NVIDIA V100 GPUs on the OLCF supercomputer Summit.
Smoky Mountain Data Challenge 2020: An Open Call to Solve Data Problems in the Areas of Neutron Science, Material Science, Urban Modeling and Dynamics, Geophysics, and Biomedical Informatics
The 2020 Smoky Mountains Computational Sciences and Engineering Conference enlists research scientists from across Oak Ridge National Laboratory (ORNL) to be data sponsors and help create data analytics challenges for eminent data sets at the laboratory. This work describes the significance of each of the seven data sets and their as- sociated challenge questions. The challenge questions for each data set were required to cover multiple difficulty levels. An international call for participation was sent to students, and researchers asking them to form teams of up to four people to apply novel data analytics techniques to these data sets.
Deep Learning and Structural Imaging of Materials
Deep learning has had a transformative effect on numerous domains and is actively utilized by many scientists in data-intensive fields such as high-energy physics and cosmology. Materials science, and in particular, the structural imaging of materials with electrons and X-rays are projected to enter the age of scientific data torrents, positioning them as new application spaces for modern artificial intelligence. In this contribution, we provide a synopsis on the foundations and latest progress in deep learning and present an in-depth application of utilizing modern deep artificial neural networks in scanning transmission electron microscopy to extract structural material properties. We use this case study to expose the strengths of deep learning-based models and discuss their current limitations, in the process highlighting their potential use in other data-intensive structural imaging modalities.
Strategies to Deploy and Scale Deep Learning on the Summit Supercomputer
The rapid growth and wide applicability of Deep Learning (DL) frameworks poses challenges to computing centers which need to deploy and support the software, and also to domain scientists who have to keep up with the system environment and scale up scientific exploration through DL. We offer recommendations for deploying and scaling DL frameworks on the Summit supercomputer, currently atop the Top500 list, at the Oak Ridge National Laboratory Leadership Computing Facility (OLCF). We discuss DL software deployment in the form of containers, and compare performance of native-built frameworks and containerized deployment. Software containers show no noticeable negative performance impact and exhibit faster Python loading times and promise easier maintenance. To explore strategies for scaling up DL model training campaigns, we assess DL compute kernel performance, discuss and recommend I/O data formats and staging, and identify communication needs for scalable message exchange for DL runs at scale. We recommend that users take a step-wise tuning approach beginning with algorithmic kernel choice, node I/O configuration, and communications tuning as best-practice. We present baseline examples of scaling efficiency 87% for a DL run of ResNet50 running on 1024 nodes (6144 V100 GPUs).
STEMDL
The code "STEMDL" provides highly-optimized multi-gpu implementations of DL models of applicability in electron microscopy via the use of mixed-precision arithmetic, native graph construction and evaluation in Tensorflow, and adaptive scaling of learning parameters to avoid numerical instabilities due to reduced precision. STEMDL also uses low-level methods from the Horovod library for gradient communication and reduction and adds an additional optimization by allowing the user to scheduling the gradient reduction operations based on their position within the layers of a neural net. STEMDL provides optimized I/O routines for data staging and data reading/writing in both Tensorflow and Pytorch using multi-processing and asynchronous transfer between host and device. .
NAMSA
In NAMSA, we introduce two main solutions to address the limitations of MSA-type algorithms for simulation of electron scattering/microscopy data: just-in-time compilation and work partitioning via MPI and GPU-to-GPU communication. First, the just-in-time (JIT) compilation strategy produces optimally tuned CUDA C++ kernels due to the data layout being perfectly known at runtime and compiled via calls from the Python interpreter. NAMSA automatically optimizes the 2-D FFT planning, and CUDA multi-streams scheduling/launching of probe simulations. With NAMSA, we can simulate electron scattering/microscopy on hundreds to thousands of GPUs, while removing the major limitations of memory and bandwidth from MSA.
Competing phases in epitaxial vanadium dioxide at nanoscale
Phase competition in correlated oxides offers tantalizing opportunities as many intriguing physical phenomena occur near the phase transitions. Owing to a sharp metal-insulator transition (MIT) near room temperature, the correlated vanadium dioxide (VO 2 ) exhibits a strong competition between insulating and metallic phases, which is important for practical applications. However, the phase boundary undergoes a strong modification when strain is involved, yielding complex phase transitions. Here, we report the emergence of nanoscale M2 phase domains in VO 2 epitaxial films under anisotropic strain relaxation. The competing phases of the films are imaged by multilength-scale probes, detecting the structural and electrical properties in individual local domains. Competing evolution of the M1 and M2 phases indicates the critical role of lattice-strain on both the stability of the M2 Mott phase and the energetics of the MIT in VO 2 films. This study demonstrates how strain engineering can be utilized to design phase states, which allow deliberate control of MIT behavior at the nanoscale in epitaxial VO 2 films.
USID and Pycroscopy – Open Source Frameworks for Storing and Analyzing Imaging and Spectroscopy Data
Not provided.