Magnetic antiskyrmions in two-dimensional van der Waals magnets engineered by layer stacking
Not provided.
Materials Science↗
Engineering topics
Huang, Kai
Publications and source records attributed to Huang, Kai.
Switchable Anomalous Hall Effects in Polar-Stacked 2D Antiferromagnet MnBi 2 Te 4
Not provided.
Chemistry↗
Captured QBO‐MJO Connection in a Subseasonal Prediction System
Abstract The quasi‐biennial oscillation (QBO) impacts the Madden‐Julian Oscillation (MJO) activity with a stronger MJO in QBO easterly (QBOE) than QBO westerly (QBOW) winters. However, this relationship is poorly represented in the current generation climate models. For the first time, this paper applies a stratospheric zonal‐mean nudging in a subseasonal prediction system to capture it. Two strong MJO cases in a QBO‐neutral winter are investigated. The QBO temperature and zonal wind anomalies are added separately as well as together to the stratosphere using nudging in MJO case hindcast. Only by nudging the QBO temperature anomalies while leaving the zonal wind free, can the prediction system capture the observed QBO‐MJO connection. The tropopause instability is found positively correlated to the MJO amplitude, but it cannot fully explain the captured connection. The free‐evolving zonal wind anomalies in the stratosphere due to the nudged QBO temperature are crucial for the captured connection.
54 ENVIRONMENTAL SCIENCES↗
Ultra-low concentration terbium (Tb) adsorption on garlic peels biosorbent and its application for $\mathrm{Nd}$-$\mathrm{Fe}$-$\mathrm{B}$ scraps recovery
Motivated by the strategic value of middle-heavy rare earth elements (MHREEs), we proposed a bio-adsorption method to recover ultra-low concentration terbium (Tb(Ⅲ)) from industrial wastewater that originated from the Nd-Fe-B scraps recovery process. It could be found that Tb(Ⅲ) ions as low as 5.34 ng·mL -1 (ppb) could be adsorbed onto Ca(Ⅱ)-modified garlic peels (Ca-GP) within 10 min with the adsorption efficiency of 99.2% at pH 3.5. The adsorption behavior of Tb(Ⅲ) onto Ca-GP conformed the Langmuir isotherm model and pseudo-second-order kinetic model. Attenuated total reflection Fourier Transform Infrared Spectroscopy (ATR-FTIR), X-ray photoelectron spectroscopy (XPS) and density-functional theory (DFT) calculations results showed that Tb(Ⅲ) ions could be ion-exchanged with cations in Ca-GP such as Ca(Ⅱ) and -COOH. In application, column experiment results showed that the maximum bed adsorption capacity for Tb, praseodymium (Pr), neodymium (Nd), dysprosium (Dy), and Total rare earth elements (REEs) ions calculated by the Thomas model was 0.06, 3.50, 9.65, 7.34, and 27.37 µg·g -1 , respectively, with the initial concentration of 0.37 ng·mL -1 Tb, 20 ng·mL -1 Pr, 44 ng·mL -1 Nd, 67 ng·mL -1 Dy and 170 ng·mL -1 total REEs ions of actual solutions (below the solubility of rare-earth hydroxide). Here this manuscript thus provided a novel cost-effective and efficient approach to the enrichment and recovery of MHREEs from ultra-low concentration REEs ions-containing solutions.
54 ENVIRONMENTAL SCIENCES↗
The Roles of Westward-Propagating Waves and the QBO in Limiting MJO Propagation
Abstract A recent study categorized the Madden–Julian oscillation (MJO) during boreal winter season into four types called stand, jump, slow, and fast MJO. This study focuses on the stand and jump MJO. Based on whether their convection penetrates the Maritime Continent (MC), stand and jump MJOs are seen as non-penetrating (NP) MJOs, while the other two are seen as eastward-penetrating (EP) MJOs. Results reveal the relative roles of the westward-propagating wave (WPW), as well as the QBO and ENSO, in limiting MJO propagation. Lack of the premoistening over the southern sea surface of the MC stops NP MJO from penetrating the MC. The active convection of the WPWs hinders the descending branch of the NP MJO circulation and therefore leads to the insufficient meridional advective moistening over the southern sea surface of the MC. The independent convection over the Pacific for jump MJOs is influenced by a combined effect of the QBO and ENSO. The tropopause instability induced by the MJO is found to significantly decouple from its convection over the Pacific in westerly QBO (QBOW) winters more than in easterly QBO (QBOE) winters. For jump MJOs, the independent convection over the central Pacific comes from local WPWs whose amplification and further development into deep convection are correlated to jump the MJOs’ decoupled tropopause instability. For stand MJOs, however, the seasonal-mean La Niña–like cool SST anomalies weaken the WPW activity over the central Pacific and confine WPWs within the western Pacific. Therefore, the decoupled tropopause instability of stand MJOs is out phase of WPWs and fails to induce an independent convection over the central Pacific.
54 ENVIRONMENTAL SCIENCES↗
Asymmetric and non-stoichiometric glycoprotein recognition by two distinct antibodies results in broad protection against ebolaviruses
Several ebolaviruses cause outbreaks of severe disease. Vaccines and monoclonal antibody cocktails are available to treat Ebola virus (EBOV) infections, but not Sudan virus (SUDV) or other ebolaviruses. Current cocktails contain antibodies that cross-react with the secreted soluble glycoprotein (sGP) that absorbs virus-neutralizing antibodies. By sorting memory B cells from EBOV infection survivors, we isolated two broadly reactive anti-GP monoclonal antibodies, 1C3 and 1C11, that potently neutralize, protect rodents from disease, and lack sGP cross-reactivity. Both antibodies recognize quaternary epitopes in trimeric ebolavirus GP. 1C11 bridges adjacent protomers via the fusion loop. 1C3 has a tripartite epitope in the center of the trimer apex. One 1C3 antigen-binding fragment anchors simultaneously to the three receptor-binding sites in the GP trimer, and separate 1C3 paratope regions interact differently with identical residues on the three protomers. A cocktail of both antibodies completely protected nonhuman primates from EBOV and SUDV infections, indicating their potential clinical value.
59 BASIC BIOLOGICAL SCIENCES↗
Proteo-Genomic Analysis Identifies Two Major Sites of Vulnerability on Ebolavirus Glycoprotein for Neutralizing Antibodies in Convalescent Human Plasma
Three clinically relevant ebolaviruses – Ebola (EBOV), Bundibugyo (BDBV), and Sudan (SUDV) viruses, are responsible for severe disease and occasional deadly outbreaks in Africa. The largest Ebola virus disease (EVD) epidemic to date in 2013-2016 in West Africa highlighted the urgent need for countermeasures, leading to the development and FDA approval of the Ebola virus vaccine rVSV-ZEBOV (Ervebo ® ) in 2020 and two monoclonal antibody (mAb)-based therapeutics (Inmazeb ® [atoltivimab, maftivimab, and odesivimab-ebgn] and Ebanga ® (ansuvimab-zykl) in 2020. The humoral response plays an indispensable role in ebolavirus immunity, based on studies of mAbs isolated from the antibody genes in peripheral blood circulating ebolavirus-specific human memory B cells. However, antibodies in the body are not secreted by circulating memory B cells in the blood but rather principally by plasma cells in the bone marrow. Little is known about the protective polyclonal antibody responses in convalescent plasma. Here we exploited both single-cell antibody gene sequencing and proteomic sequencing approaches to assess the composition of the ebolavirus glycoprotein (GP)-reactive antibody repertoire in the plasma of an EVD survivor. We first identified 1,512 GP-specific mAb variable gene sequences from single cells in the memory B cell compartment. Using mass spectrometric analysis of the corresponding GP-specific plasma IgG, we found that only a portion of the large B cell antibody repertoire was represented in the plasma. Molecular and functional analysis of proteomics-identified mAbs revealed recognition of epitopes in three major antigenic sites - the GP head domain, the glycan cap, and the base region, with a high prevalence of neutralizing and protective mAb specificities that targeted the base and glycan cap regions on the GP. Polyclonal plasma antibodies from the survivor reacted broadly to EBOV, BDBV, and SUDV GP, while reactivity of the potently neutralizing mAbs we identified was limited mostly to the homologous EBOV GP. Together these results reveal a restricted diversity of neutralizing humoral response in which mAbs targeting two antigenic sites on GP – glycan cap and base – play a principal role in plasma-antibody-mediated protective immunity against EVD.
59 BASIC BIOLOGICAL SCIENCES↗
Convergence of a common solution for broad ebolavirus neutralization by glycan cap-directed human antibodies
Not Available
59 BASIC BIOLOGICAL SCIENCES↗
Nanoscale chromatin imaging and analysis platform bridges 4D chromatin organization with molecular function
Extending across multiple length scales, dynamic chromatin structure is linked to transcription through the regulation of genome organization. However, no individual technique can fully elucidate this structure and its relation to molecular function at all length and time scales at both a single-cell level and a population level. Here, we present a multitechnique nanoscale chromatin imaging and analysis (nano-ChIA) platform that consolidates electron tomography of the primary chromatin fiber, optical super-resolution imaging of transcription processes, and label-free nano-sensing of chromatin packing and its dynamics in live cells. Using nano-ChIA, we observed that chromatin is localized into spatially separable packing domains, with an average diameter of around 200 nanometers, sub-megabase genomic size, and an internal fractal structure. The chromatin packing behavior of these domains exhibits a complex bidirectional relationship with active gene transcription. Furthermore, we found that properties of PDs are correlated among progenitor and progeny cells across cell division.
59 BASIC BIOLOGICAL SCIENCES↗
Discovery of Marburg virus neutralizing antibodies from virus-naïve human antibody repertoires using large-scale structural predictions
Marburg virus (MARV) disease is lethal, with fatality rates up to 90%. Neutralizing antibodies (Abs) are promising drug candidates to prevent or treat the disease. Current efforts are focused in part on vaccine development to induce such MARV-neutralizing Abs. We analyzed the antibody repertoire from healthy unexposed and previously MARV-infected individuals to assess if naïve repertoires contain suitable precursor antibodies that could become neutralizing with a limited set of somatic mutations. Here, we computationally searched the human Ab variable gene repertoire for predicted structural homologs of the neutralizing Ab MR78 that is specific to the receptor binding site (RBS) of MARV glycoprotein (GP). Eight Ab heavy-chain complementarity determining region 3 (HCDR3) loops from MARV-naïve individuals and one from a previously MARV-infected individual were selected for testing as HCDR3 loop chimeras on the MR78 Ab framework. Three of these chimerized antibodies bound to MARV GP. We then tested a full-length native Ab heavy chain encoding the same 17-residue-long HCDR3 loop that bound to the MARV GP the best among the chimeric Abs tested. Despite only 57% amino acid sequence identity, the Ab from a MARV-naïve donor recognized MARV GP and possessed neutralizing activity against the virus. Crystallization of both chimeric and full-length native heavy chain-containing Abs provided structural insights into the mechanism of binding for these types of Abs. Our work suggests that the MARV GP RBS is a promising candidate for epitope-focused vaccine design to induce neutralizing Abs against MARV.
59 BASIC BIOLOGICAL SCIENCES↗
A mathematical model of asynchronous data flow in parallel computers *
Abstract We present a simplified model of data flow on processors in a high-performance computing framework involving computations necessitating inter-processor communications. From this ordinary differential model, we take its asymptotic limit, resulting in a model which treats the computer as a continuum of processors and data flow as an Eulerian fluid governed by a conservation law. We derive a Hamilton–Jacobi equation associated with this conservation law for which the existence and uniqueness of solutions can be proven. We then present the results of numerical experiments for both discrete and continuum models; these show a qualitative agreement between the two and the effect of variations in the computing environment’s processing capabilities on the progress of the modelled computation.
Barnard, Richard C.↗