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Gunasekaran, Raghul

Publications and source records attributed to Gunasekaran, Raghul.

17 records
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DOE OSTI2017

Applying Graph Analytics to Understand Compute Core Usage and Publication Trends in a Petascale Supercomputing Facility

The Oak Ridge Leadership Computing Facility (OLCF) runs Titan, the No. 4 supercomputer in the world, to deliver over four billion compute core hours every year to several scientific domains, in their pursuit of leadership science. In this paper, we analyze four years worth of heterogeneous log data sources from the OLCF resource fabric, capturing metadata on entities such as users (2,546), scientific project allocations (674), jobs (1,352,402) and publications (1,146), to derive insights into the trends in core hour usage and publications, across 35 science domains. We have constructed a scalable graph to represent the OLCF entities and apply rich graph analytics for our analysis. Based on this, we have analyzed the metadata across five dimensions, namely (1) quantitative analysis of Titan system usage, (2) quantitative analysis of OLCF publications, (3) correlation analysis between system usage and publications, (4) text analysis to derive OLCF research trends, and (5) utilization of graph mining for association analysis. To the best of our knowledge, our work is the first of its kind to apply graph- based big data techniques to provide comprehensive insights on an HPC center's core hour usage and users' publication trends. Our results provide valuable details into an HPC center's core allocation program, measuring the productivity of scientific domains, the interplay between core usage and research output, accelerating collaboration, and in predicting new connections between resource entities.

Lee, Sangkeun (Matt)↗
DOE OSTI2017

Scientific User Behavior and Data-Sharing Trends in a Petascale File System

The Oak Ridge Leadership Computing Facility (OLCF) runs the No. 4 supercomputer in the world, supported by a petascale file system, to facilitate scientific discovery. In this paper, using the daily file system metadata snapshots collected over 500 days, we have studied the behavioral trends of 1, 362 active users and 380 projects across 35 science domains. In particular, we have analyzed both individual and collective behavior of users and projects, highlighting needs from individual communities and the overall requirements to operate the file system. We have analyzed the metadata across three dimensions, namely (i) the projects' file generation and usage trends, using quantitative file system-centric metrics, (ii) scientific user behavior on the file system, and (iii) the data sharing trends of users and projects. To the best of our knowledge, our work is the first of its kind to provide comprehensive insights on user behavior from multiple science domains through metadata analysis of a large-scale shared file system. We envision that this OLCF case study will provide valuable insights for the design, operation, and management of storage systems at scale, and also encourage other HPC centers to undertake similar such efforts.

Lim, Seung-Hwan↗
DOE OSTI2017

GUIDE: A Scalable Information Directory Service to Collect, Federate, and Analyze Logs for Operational Insights into a Leadership HPC Facility

In this paper, we describe the GUIDE framework to collect, federate, and analyze log data from the Oak Ridge Leadership Computing Facility's (OLCF), and how we use it derive insights into center operations. We collectsystem logs and extract monitoring data at every level of the various OLCF subsystems, and have developed a suite of pre-processing tools to make the raw data consumable. The cleansed logs are then ingested and federated into a central, scalable data warehouse, Splunk, that offers storage, indexing, querying, and visualization capabilities. We have further developed and deployed a set of analytics tools to analyze these multiple disparate log streams in concert, and derive operational insights. We describe our experience from developing and deploying the GUIDE infrastructure, and deriving valuable insights on the various subsystems, based on two years of operations in the production OLCF environment.

Vazhkudai, Sudharshan↗
DOE OSTI2016

Constellation: A science graph network for scalable data and knowledge discovery in extreme-scale scientific collaborations

Constellation's overarching goal is the federation of information from resources within an extreme-scale scientific collaboration to enable the scalable discovery of data and new knowledge pathways. The resource fabric is comprised of petascale supercomputers and storage systems, users, jobs, datasets and lifecycle artifacts. For an extreme-scale supercomputing center, normal operations can generate hundreds of millions of data products and metadata entries describing the resource fabric. Constellation federates the information extracted from the resources using a custom, transformative science graph network; constructs rich metadata indexes and higher-order derived metadata from the extracted information; and conducts scalable graph analytics to unravel hidden data pathways. Our implementation and deployment for a production, supercomputing facility shows that the graph can scale to more than 750 million vertices, its domain agnostic indexing can answer interesting science queries, and its analytics can aid in structural, topological and temporal analysis to identify usage hotspots.

Vazhkudai, Sudharshan S.↗
DOE OSTI2016

Server-side Log Data Analytics for I/O Workload Characterization and Coordination on Large Shared Storage Systems

Inter-application I/O contention and performance interference have been recognized as severe problems. In this work, we demonstrate, through measurement from Titan (world s No. 3 supercomputer), that high I/O variance co-exists with the fact that individual storage units remain under-utilized for the majority of the time. This motivates us to propose AID, a system that performs automatic application I/O characterization and I/O-aware job scheduling. AID analyzes existing I/O traffic and batch job history logs, without any prior knowledge on applications or user/developer involvement. It identifies the small set of I/O-intensive candidates among all applications running on a supercomputer and subsequently mines their I/O patterns, using more detailed per-I/O-node traffic logs. Based on such auto- extracted information, AID provides online I/O-aware scheduling recommendations to steer I/O-intensive applications away from heavy ongoing I/O activities. We evaluate AID on Titan, using both real applications (with extracted I/O patterns validated by contacting users) and our own pseudo-applications. Our results confirm that AID is able to (1) identify I/O-intensive applications and their detailed I/O characteristics, and (2) significantly reduce these applications I/O performance degradation/variance by jointly evaluating out- standing applications I/O pattern and real-time system l/O load.

Liu, Y.↗
DOE OSTI2015

Comparative I/O workload characterization of two leadership class storage clusters. In: PDSW '15 Proceedings of the 10th Parallel Data Storage Workshop

The Oak Ridge Leadership Computing Facility (OLCF) is a leader in large-scale parallel file system development, design, deployment and continuous operation. For the last decade, the OLCF has designed and deployed two large center-wide parallel file systems. The first instantiation, Spider 1, served the Jaguar supercomputer and its predecessor, Spider 2, now serves the Titan supercomputer, among many other OLCF computational resources. The OLCF has been rigorously collecting file and storage system statistics from these Spider systems since their transition to production state. In this paper we present the collected I/O workload statistics from the Spider 2 system and compare it to the Spider 1 data. Our analysis show that the Spider 2 workload is more more write-heavy I/O compared to Spider 1 (75% vs. 60%, respectively). The data also show the OLCF storage policies such as periodic purges are effectively managing the capacity resource of Spider 2. Furthermore, due to improvements in tdm_multipath and ib_srp software, we are utilizing the Spider 2 system bandwidth and latency resources more effectively. The Spider 2 bandwidth usage statistics shows that our system is working within the design specifications. However, it is also evident that our scientific applications can be more effectively served by a burst buffer storage layer. All the data has been collected by monitoring tools developed for the Spider ecosystem. We believe the observed data set and insights will help us better design the next-generation Spider file and storage system. It will also be helpful to the larger community for building more effective large-scale file and storage systems.

Gunasekaran, Raghul↗
DOE OSTI2014

Understanding I/O workload characteristics of a Peta-scale storage system

Understanding workload characteristics is critical for optimizing and improving the performance of current systems and software, and architecting new storage systems based on observed workload patterns. In this paper, we characterize the I/O workloads of scientific applications of one of the world's fastest high performance computing (HPC) storage cluster, Spider, at the Oak Ridge Leadership Computing Facility (OLCF). OLCF flagship petascale simulation platform, Titan, and other large HPC clusters, in total over 250 thousands compute cores, depend on Spider for their I/O needs. We characterize the system utilization, the demands of reads and writes, idle time, storage space utilization, and the distribution of read requests to write requests for the Peta-scale Storage Systems. From this study, we develop synthesized workloads, and we show that the read and write I/O bandwidth usage as well as the inter-arrival time of requests can be modeled as a Pareto distribution. We also study the I/O load imbalance problems using I/O performance data collected from the Spider storage system.

I/O↗
DOE OSTI2014

Best Practices and Lessons Learned from Deploying and Operating Large-Scale Data-Centric Parallel File Systems, In: SC '14: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis

The Oak Ridge Leadership Computing Facility (OLCF) has deployed multiple large-scale parallel file systems (PFS) to support its operations. During this process, OLCF acquired significant expertise in large-scale storage system design, file system software development, technology evaluation, benchmarking, procurement, deployment, and operational practices. Based on the lessons learned from each new PFS deployment, OLCF improved its operating procedures, and strategies. This paper provides an account of our experience and lessons learned in acquiring, deploying, and operating large-scale parallel file systems. We believe that these lessons will be useful to the wider HPC community.

Computer Science↗
DOE OSTI2014

Automatic Identification of Application I/O Signatures from Noisy Server-Side Traces

Competing workloads on a shared storage system cause I/O resource contention and application performance vagaries. This problem is already evident in today s HPC storage systems and is likely to become acute at exascale. We need more interaction between application I/O requirements and system software tools to help alleviate the I/O bottleneck, moving towards I/O-aware job scheduling. However, this requires rich techniques to capture application I/O characteristics, which remain evasive in production systems. Traditionally, I/O characteristics have been obtained using client-side tracing tools, with drawbacks such as non-trivial instrumentation/development costs, large trace traffic, and inconsistent adoption. We present a novel approach, I/O Signature Identifier (IOSI), to characterize the I/O behavior of data-intensive applications. IOSI extracts signatures from noisy, zero-overhead server-side I/O throughput logs that are already collected on today s supercomputers, without interfering with the compiling/execution of applications. We evaluated IOSI using the Spider storage system at Oak Ridge National Laboratory, the S3D turbulence application (running on 18,000 Titan nodes), and benchmark-based pseudo-applications. Through our ex- periments we confirmed that IOSI effectively extracts an application s I/O signature despite significant server-side noise. Compared to client-side tracing tools, IOSI is transparent, interface-agnostic, and incurs no overhead. Compared to alternative data alignment techniques (e.g., dynamic time warping), it offers higher signature accuracy and shorter processing time.

Liu, Yang↗
DOE OSTI2012

A Next-Generation Parallel File System Environment for the OLCF

When deployed in 2008/2009 the Spider system at the Oak Ridge National Laboratory s Leadership Computing Facility (OLCF) was the world s largest scale Lustre parallel file system. Envisioned as a shared parallel file system capable of delivering both the bandwidth and capacity requirements of the OLCF s diverse computational environment, Spider has since become a blueprint for shared Lustre environments deployed worldwide. Designed to support the parallel I/O requirements of the Jaguar XT5 system and other smallerscale platforms at the OLCF, the upgrade to the Titan XK6 heterogeneous system will begin to push the limits of Spider s original design by mid 2013. With a doubling in total system memory and a 10x increase in FLOPS, Titan will require both higher bandwidth and larger total capacity. Our goal is to provide a 4x increase in total I/O bandwidth from over 240GB=sec today to 1TB=sec and a doubling in total capacity. While aggregate bandwidth and total capacity remain important capabilities, an equally important goal in our efforts is dramatically increasing metadata performance, currently the Achilles heel of parallel file systems at leadership. We present in this paper an analysis of our current I/O workloads, our operational experiences with the Spider parallel file systems, the high-level design of our Spider upgrade, and our efforts in developing benchmarks that synthesize our performance requirements based on our workload characterization studies.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2012

Big Data Platforms as a Service: Challenges and Approach

Infrastructure-as-a-Service has revolutionized the manner in which users commission computing infrastructure. Coupled with Big Data platforms (Hadoop, Cassandra), IaaS has democratized the ability to store and process massive datasets. For users that need to customize or create new Big Data stacks, however, readily available solutions do not yet exist. Users must first acquire the necessary cloud computing infrastructure, and manually install the prerequisite software. For complex distributed services this can be a daunting challenge. To address this issue, we argue that distributed services should be viewed as a single application consisting of virtual machines. Users should no longer be concerned about individual machines or their internal organization. To illustrate this concept, we introduce Cloud-Get, a distributed package manager that enables the simple installation of distributed services in a cloud computing environment. Cloud-Get enables users to instantiate and modify distributed services, including Big Data services, using simple commands. Cloud-Get also simplifies creating new distributed services via standardized package definitions.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2011

Characterizing Application Runtime Behavior from System Logs and Metrics

Large-scale systems are heavily shared resource environments where a mix of applications are launched concurrently competing for network and storage resources. It is essential to characterize the runtime behavior of these applications for provisioning system resources and understanding the impact of application s performance when competing for resources. In this paper, we study the use of zero- and low-overhead system logs and other system metric data for characterizing the runtime behavior of several applications. We present our preliminary work on estimating individual application s I/O demands by observing file system usage pattern over multiple runs, and interpreting application s network utilization characteristics by observing link-layer error logs. We also present preliminary findings on using such information in making context-sensitive scheduling decisions that minimize potentially negative interactions between applications competing for shared resources. Our analysis is based on four months of system log data collected on one of the world s largest supercomputing facilities, the Jaguar XT5 petaflop system at Oak Ridge National Laboratory.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2011

Real-Time System Log Monitoring/Analytics Framework

Analyzing system logs provides useful insights for identifying system/application anomalies and helps in better usage of system resources. Nevertheless, it is simply not practical to scan through the raw log messages on a regular basis for large-scale systems. First, the sheer volume of unstructured log messages affects the readability, and secondly correlating the log messages to system events is a daunting task. These factors limit large-scale system logs primarily for generating alerts on known system events, and post-mortem diagnosis for identifying previously unknown system events that impacted the systems performance. In this paper, we describe a log monitoring framework that enables prompt analysis of system events in real-time. Our web-based framework provides a summarized view of console, netwatch, consumer, and apsched logs in real- time. The logs are parsed and processed to generate views of applications, message types, individual/group of compute nodes, and in sections of the compute platform. Also from past application runs we build a statistical profile of user/application characteristics with respect to known system events, recoverable/non-recoverable error messages and resources utilized. The web-based tool is being developed for Jaguar XT5 at the Oak Ridge Leadership Computing facility.

Oral, H Sarp↗