Graph theory approach to estimate the rate of SARS-CoV-2 lineage spread from early genetic sequence data
Analyze virus genetic sequences to identify lineages that are spreading especially rapidly.
Ke, Ruian [Los Alamos National Laboratory]↗
Engineering topics
Publications and source records attributed to Goldberg, Emma.
Analyze virus genetic sequences to identify lineages that are spreading especially rapidly.
This code enables fitting a model of an infectious disease outbreak, customized for when available data is a combination of case counts and symptom survey responses. This is just a small bit of code being used only for a publication; we need to release it to fulfill a journal's requirement that our work be reproducible.