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Dennis, John

Publications and source records attributed to Dennis, John.

9 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

A comprehensive method on black-legged tick larvae and nymph feeding on mice to study Lyme disease transmission and acquisition

Tick-borne diseases are a growing public health concern in the United States, with cases rising steadily each year. Lyme borreliosis, or Lyme disease, remains the most prevalent, affecting approximately 476,000 individuals annually. Human-driven changes in climate and ecosystems have expanded the habitat of pathogen-carrying ticks, facilitating the spread of these infections. Additionally, increased instances of tick-borne diseases transmission through human tissues have been reported. Despite ongoing efforts to manage these infections, their incidence continues to rise. To develop effective control measures against these diseases and prevent the transmission of tick-borne infections through human and animal tissues, it is very important to develop detection assays and understand the transmission mechanisms of tick-borne infections. In this study, we provide detailed descriptions and visual references for larval and nymphal tick feeding on mice, focusing on the transmission and acquisition ofBorrelia burgdorferi(sensu stricto). These methodologies can be applied to study other tick-borne diseases, tick vectorial capacity, and tick biology, aiding in the development of detection strategies to combat these infections.

Microbiology↗
DOE OSTI2023

Importance of ice nucleation and precipitation on climate with the Parameterization of Unified Microphysics Across Scales version 1 (PUMASv1)

Cloud microphysics is critical for weather and climate prediction. In this work, we document updates and corrections to the cloud microphysical scheme used in the Community Earth System Model (CESM) and other models. These updates include a new nomenclature for the scheme, now called Parameterization of Unified Microphysics Across Scales (PUMAS), and the ability to run the scheme on graphics processing units (GPUs). The main science changes include refactoring an ice number limiter and associated changes to ice nucleation, adding vapor deposition onto snow, and introducing an implicit numerical treatment for sedimentation. We also detail the improvements in computational performance that can be achieved with GPU acceleration. We then show the impact of these scheme changes on the (a) mean state climate, (b) cloud feedback response to warming, and (c) aerosol forcing. We find that corrections are needed to the immersion freezing parameterization and that ice nucleation has important impacts on climate. We also find that the revised scheme produces less cloud liquid and ice but that this can be adjusted by changing the loss process for cloud liquid (autoconversion). Furthermore, there are few discernible effects of the PUMAS changes on cloud feedbacks but some reductions in the magnitude of aerosol–cloud interactions (ACIs). Small cloud feedback changes appear to be related to the implicit sedimentation scheme, with a number of factors affecting ACIs.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Effects of Model Resolution, Physics, and Coupling on Southern Hemisphere Storm Tracks in CESM1.3

Two high–resolution versions of a Coupled Earth System Model (CESM1.3: 0.25° atmosphere, 1° ocean; CESM1.1: 0.25° atmosphere, 0.1° ocean) are compared to the standard resolution CESM1.1 and CESM1.3 (1° atmosphere, 1° ocean). The CESM1.3 versions are documented, and the consequences of model resolution, air–sea coupling, and physics in the atmospheric models are studied with regard to storm tracks in the Southern Hemisphere as represented by 850–hPa eddy kinetic energy. Increasing the resolution from 1° to 0.25° in the atmosphere (same physics) coupled to the 1° ocean intensifies the strength of the storm tracks closer to observations. The 0.25° atmosphere with the older CESM1.1 physics coupled to the 0.1° ocean has fewer low clouds, warmer Southern Ocean sea surface temperatures, a weaker meridional temperature gradient, and a degraded storm track simulation compared to the 0.25° atmosphere with CESM1.3 physics coupled to the 1° ocean. Furthermore, deficient physics in the atmospheric model can negate the gains attained by higher resolution in atmosphere and ocean.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2017

Evaluating and optimizing the NERSC workload on Knights Landing

NERSC has partnered with 20 representative application teams to evaluate performance on the Xeon-Phi Knights Landing architecture and develop an application-optimization strategy for the greater NERSC workload on the recently installed Cori system. In this article, we present early case studies and summarized results from a subset of the 20 applications highlighting the impact of important architecture differences between the Xeon-Phi and traditional Xeon processors. We summarize the status of the applications and describe the greater optimization strategy that has formed.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

Collaborative Project: Improving the Representation of Coastal and Estuarine Processes in Earth System Models

This project aimed to improve long term global climate simulations by resolving and enhancing the representation of the processes involved in the cycling of freshwater through estuaries and coastal regions. This was a collaborative multi-institution project consisting of physical oceanographers, climate model developers, and computational scientists. It specifically targeted the DOE objectives of advancing simulation and predictive capability of climate models through improvements in resolution and physical process representation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Final Report Collaborative Project: Improving the Representation of Coastal and Estuarine Processes in Earth System Models

This project aimed to improve long term global climate simulations by resolving and enhancing the representation of the processes involved in the cycling of freshwater through estuaries and coastal regions. This was a collaborative multi-institution project consisting of physical oceanographers, climate model developers, and computational scientists. It specifically targeted the DOE objectives of advancing simulation and predictive capability of climate models through improvements in resolution and physical process representation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Final Report Collaborative Project. Improving the Representation of Coastal and Estuarine Processes in Earth System Models

This project aimed to improve long term global climate simulations by resolving and enhancing the representation of the processes involved in the cycling of freshwater through estuaries and coastal regions. This was a collaborative multi-institution project consisting of physical oceanographers, climate model developers, and computational scientists. It specifically targeted the DOE objectives of advancing simulation and predictive capability of climate models through improvements in resolution and physical process representation. The main computational objectives were: 1. To develop computationally efficient, but physically based, parameterizations of estuary and continental shelf mixing processes for use in an Earth System Model (CESM). 2. To develop a two-way nested regional modeling framework in order to dynamically downscale the climate response of particular coastal ocean regions and to upscale the impact of the regional coastal processes to the global climate in an Earth System Model (CESM). 3. To develop computational infrastructure to enhance the efficiency of data transfer between specific sources and destinations, i.e., a point-to-point communication capability, (used in objective 1) within POP, the ocean component of CESM.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Collaborative project. Ocean-atmosphere interaction from meso-to planetary-scale. Mechanisms, parameterization, and variability

This project aims to improve long term global climate simulations by resolving ocean mesoscale activity and the corresponding response in the atmosphere. The main computational objectives are; i) to perform and assess Community Earth System Model (CESM) simulations with the new Community Atmospheric Model (CAM) spectral element dynamical core; ii) use static mesh refinement to focus on oceanic fronts; iii) develop a new Earth System Modeling tool to investigate the atmospheric response to fronts by selectively filtering surface flux fields in the CESM coupler. The climate research objectives are 1) to improve the coupling of ocean fronts and the atmospheric boundary layer via investigations of dependency on model resolution and stability functions: 2) to understand and simulate the ensuing tropospheric response that has recently been documented in observations: and 3) to investigate the relationship of ocean frontal variability to low frequency climate variability and the accompanying storm tracks and extremes in high resolution simulations. This is a collaborative multi-institution project consisting of computational scientists, climate scientists and climate model developers. It specifically aims at DOE objectives of advancing simulation and predictive capability of climate models through improvements in resolution and physical process representation.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2015

Final Project Report

Most climate models are currently run with grid spacings of around 100km, which, with today’s computing power, allows for long (up to 1000 year) simulations, or ensembles of simulations to explore climate change and variability. However this grid spacing does not resolve important components of the weather/climate system such as atmospheric fronts and mesoscale systems, and ocean boundary currents and eddies. The overall aim of this project has been to look at the effect of these small-scale features on the weather/climate system using a suite of high and low resolution climate models, idealized models and observations. This project was only possible due to the highly scalable aspect of the CAM Spectral Element dynamical core, and the significant resources allocated at Yellowstone and NERSC for which we are grateful.

54 ENVIRONMENTAL SCIENCES↗