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Chen, Yan

Publications and source records attributed to Chen, Yan.

At least 163 records · Page 9

Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor

Significance Despite the importance of immune receptors in the biology of plants and animals, the precise biochemical mechanisms leading to the biosynthesis and secretion of the peptide activators of these immune receptors remain unexplored. Here, we describe the biosynthesis, processing, and secretion of a peptide activator that binds a rice immune receptor. Our studies also reveal that this peptide activator is a member of an important class of peptides present in both eukaryotic and prokaryotic species. Thus, these results provide a major advance in our knowledge of the biology of peptide ligands.

59 BASIC BIOLOGICAL SCIENCES↗

Mixed-conducting interlayer boosting the electrochemical performance of Ni-rich layered oxide cathode materials for lithium ion batteries

In this work, a unique artificial interface combing characteristics of both high ionic and electronic conductivities has been successfully constructed at the surface of Ni-rich LiNi 0·8 Co 0·1 Mn 0·1 O 2 (NCM811). The ionic conductor layer is fabricated through reacting H 3 PO 4 with the lithium residuals on the surface of NCM811 to form Li 3 PO 4 . The interface with high electronic conductivity is constructed by attaching graphene fragments to the NCM811 spherical particles. Due to the synergistic effect of the Li3PO4 coating layer and the graphene network, the modified sample (GN-LPO-NCM811) exhibits high capacity retention of 94.3% after 150 cycles at 0.5C between 3.0 and 4.3 V, while the pristine material shows a much lower retention of only 88.1%. In addition, the GN-LPO-NCM811 also presents improved cycling stability at elevated temperature of 55 °C. Even at an extremely high rate of 10C, the GN-LPO-NCM811 still remains 70% of its original capacity, while the pristine NCM811 only delivers 50% of the capacity. The stable cycling performance of GN-LPO-NCM811 is demonstrated in a full cell with graphite anode at ambient temperatures. Importantly, the thermal stability of the modified samples is also greatly enhanced. This study provides an effective method to improve the electrochemical performance of LiNi 0·8 Co 0·1 Mn 0·1 O 2 .

25 ENERGY STORAGE↗

Complete biosynthesis of cannabinoids and their unnatural analogues in yeast

Cannabis sativa L. has been cultivated and used around the globe for its medicinal properties for millennia. Some cannabinoids, the hallmark constituents of Cannabis, and their analogues have been investigated extensively for their potential medical applications. Certain cannabinoid formulations have been approved as prescription drugs in several countries for the treatment of a range of human ailments. However, the study and medicinal use of cannabinoids has been hampered by the legal scheduling of Cannabis, the low in planta abundances of nearly all of the dozens of known cannabinoids, and their structural complexity, which limits bulk chemical synthesis. Here we report the complete biosynthesis of the major cannabinoids cannabigerolic acid, Δ 9 -tetrahydrocannabinolic acid, cannabidiolic acid, Δ 9 -tetrahydrocannabivarinic acid and cannabidivarinic acid in Saccharomyces cerevisiae, from the simple sugar galactose. To accomplish this, we engineered the native mevalonate pathway to provide a high flux of geranyl pyrophosphate and introduced a heterologous, multi-organism-derived hexanoyl-CoA biosynthetic pathway. We also introduced the Cannabis genes that encode the enzymes involved in the biosynthesis of olivetolic acid, as well as the gene for a previously undiscovered enzyme with geranylpyrophosphate:olivetolate geranyltransferase activity and the genes for corresponding cannabinoid synthases. Furthermore, we established a biosynthetic approach that harnessed the promiscuity of several pathway genes to produce cannabinoid analogues. Feeding different fatty acids to our engineered strains yielded cannabinoid analogues with modifications in the part of the molecule that is known to alter receptor binding affinity and potency. We also demonstrated that our biological system could be complemented by simple synthetic chemistry to further expand the accessible chemical space. Our work presents a platform for the production of natural and unnatural cannabinoids that will allow for more rigorous study of these compounds and could be used in the development of treatments for a variety of human health problems.

59 BASIC BIOLOGICAL SCIENCES↗

Engineering Corynebacterium glutamicum to produce the biogasoline isopentenol from plant biomass hydrolysates

Abstract Background Many microbes used for the rapid discovery and development of metabolic pathways have sensitivities to final products and process reagents. Isopentenol (3-methyl-3-buten-1-ol), a biogasoline candidate, has an established heterologous gene pathway but is toxic to several microbial hosts. Reagents used in the pretreatment of plant biomass, such as ionic liquids, also inhibit growth of many host strains. We explored the use of Corynebacterium glutamicum as an alternative host to address these constraints. Results We found C. glutamicum ATCC 13032 to be tolerant to both the final product, isopentenol, as well to three classes of ionic liquids. A heterologous mevalonate-based isopentenol pathway was engineered in C. glutamicum . Targeted proteomics for the heterologous pathway proteins indicated that the 3-hydroxy-3-methylglutaryl-coenzyme A reductase protein, HmgR, is a potential rate-limiting enzyme in this synthetic pathway. Isopentenol titers were improved from undetectable to 1.25 g/L by combining three approaches: media optimization; substitution of an NADH-dependent HmgR homolog from Silicibacter pomeroyi ; and development of a C. glutamicum ∆poxB ∆ldhA host chassis. Conclusions We describe the successful expression of a heterologous mevalonate-based pathway in the Gram-positive industrial microorganism, C. glutamicum, for the production of the biogasoline candidate, isopentenol. We identified critical genetic factors to harness the isopentenol pathway in C. glutamicum . Further media and cultivation optimization enabled isopentenol production from sorghum biomass hydrolysates.

09 BIOMASS FUELS↗

In situ investigation of stress-induced martensitic transformation in granular shape memory ceramic packings

Stress-induced martensitic transformation can occur in granular shape memory materials when individual particles experience high stresses and transform from a high-symmetry austenite phase to a low-symmetry martensite phase. This involves a highly heterogeneous distribution of the driving force and very low mechanical constraint for martensite nucleation, so the transformation behavior can be dramatically different from the well-documented case of monolithic solids. In this work, we investigate the stress-induced martensitic transformation in granular shape memory ceramic packings, which consist of single-crystal micro-particles of ZrO 2 -12 at%CeO 2 and ZrO 2 -15 at%CeO 2 . Using in situ neutron diffraction, we study how the phase fraction, lattice strain, and integral peak broadness evolve during external loading, unloading, and subsequent heating. Several peculiar features are discovered, including (i) a continuous mode of transformation with a wide range of transformation loads, (ii) co-evolution of the packing structure, contact deformation, and martensitic transformation, and (iii) a strong correlation between the peak broadening and the transformed phase fraction. In addition, we show the first direct evidence of reversible stress-induced martensitic transformation in granular materials. We additionally discuss the mechanism for martensite nucleation and growth in granular packings and show how that leads to the observed transformation characteristics.

36 MATERIALS SCIENCE↗

A rapid methods development workflow for high-throughput quantitative proteomic applications

Recent improvements in the speed and sensitivity of liquid chromatography-mass spectrometry systems have driven significant progress toward system-wide characterization of the proteome of many species. These efforts create large proteomic datasets that provide insight into biological processes and identify diagnostic proteins whose abundance changes significantly under different experimental conditions. Yet, these system-wide experiments are typically the starting point for hypothesis-driven, follow-up experiments to elucidate the extent of the phenomenon or the utility of the diagnostic marker, wherein many samples must be analyzed. Transitioning from a few discovery experiments to quantitative analyses on hundreds of samples requires significant resources both to develop sensitive and specific methods as well as analyze them in a high-throughput manner. To aid these efforts, we developed a workflow using data acquired from discovery proteomic experiments, retention time prediction, and standard-flow chromatography to rapidly develop targeted proteomic assays. We demonstrated this workflow by developing MRM assays to quantify proteins of multiple metabolic pathways from multiple microbes under different experimental conditions. With this workflow, one can also target peptides in scheduled/dynamic acquisition methods from a shotgun proteomic dataset downloaded from online repositories, validate with appropriate control samples or standard peptides, and begin analyzing hundreds of samples in only a few minutes.

02 PETROLEUM↗

Final Energy Savings Analysis of the Proposed NYStretch-Energy Code 2018

In 2017, New York State Energy Research and Development Authority (NYSERDA) developed its 2016 Stretch Code Supplement to the 2016 New York State Energy Conservation Construction Code. Since2017, NYSERDA has continued to develop the 2018 edition, as part of the efforts to achieve a statewide Net Zero Energy Code by 2028. To support this effort, Pacific Northwest National Laboratory (PNNL)conducted energy simulation analysis to quantify the energy savings of proposed commercial provisions of the NYStretch-Energy Code 2018 compared to ANSI/ASHRAE/IES1 Standard 90.1-2013. Specifically, PNNL collaborated with New Buildings Institute (NBI), and developed energy-efficiency measures (EEMs) from national model codes and standards, high-performance building codes and standards, regional energy codes, and measures being proposed as part of the ongoing NYStretch-Energy code development process. PNNL analyzed these measures using whole building energy simulation for selected prototype commercial and multifamily buildings representing buildings in New York State.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Final Energy Savings Analysis of the Proposed NYStretch-Energy Code 2018

In 2017, New York State Energy Research and Development Authority (NYSERDA) developed its 2016 Stretch Code Supplement to the 2016 New York State Energy Conservation Construction Code. Since 2017, NYSERDA has continued to develop the 2018 edition, as part of the efforts to achieve a statewide Net Zero Energy Code by 2028. To support this effort, Pacific Northwest National Laboratory (PNNL) conducted energy simulation analysis to quantify the energy savings of proposed commercial provisions of the NYStretch-Energy Code 2018 compared to ANSI/ASHRAE/IES1 Standard 90.1-2013. Specifically, PNNL collaborated with New Buildings Institute (NBI), and developed energy-efficiency measures (EEMs) from national model codes and standards, high-performance building codes and standards, regional energy codes, and measures being proposed as part of the ongoing NYStretch-Energy code development process. PNNL analyzed these measures using whole building energy simulation for selected prototype commercial and multifamily buildings representing buildings in New York State. This report describes the analysis methodology, explains detailed specifications of the EEMs, and summarizes the results of individual EEMs and EEM bundles by building type and climate zone. As shown in Figure ES.1, significant energy saving could be achieved by adopting the NYStretch-Energy Code 2018.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Development and Calibration of an Online Energy Model for AHU Fan

The model development is necessary for the study of the energy consumption of Heating, Ventilation, and Air Conditioning (HVAC) systems. To predict the HVAC energy consumption accurately, one needs to model the individual HVAC components either from the measured data or based on the knowledge of the underlying physical phenomenon. Online model characterization is critical for improving the performance of real-time model-based fault detection and diagnosis (FDD) strategies. For HVAC control, models can be used to optimize the supervisory and local feedback control strategies to improve the energy consumption efficiency, or for providing ancillary services to the grid. It has been reported that, fans in HVAC systems of commercial buildings alone can provide substantial frequency regulation service, with little change in the indoor environment. In this paper, a real-time data-driven Air Handling Unit (AHU) fan model was developed based on recursive multi regression model. A generic nonlinear polynomial model has been studied to cover scenarios with different combinations of measurement variables, variable orders as well as different training and prediction horizons. Typical measurements including static pressure, mass flow rate, and damper positions are utilized as inputs to model the power consumption of the fan. The developed models have been validated both with simulation data from EnergyPlus-Dymola co-simulation model and with field measurement data for small to medium commercial buildings. The validation results show that the online model proposed can provide an effective prediction of the AHU fan power consumption.

Dong, Jin↗

Final Energy Savings Analysis of the Proposed NYStretch-Energy Code 2018

This study was conducted by the Pacific Northwest National Laboratory (PNNL) in support of the stretch energy code development led by the New York State Energy Research and Development Authority (NYSERDA). In 2017 NYSERDA developed its 2016 Stretch Code Supplement to the 2016 New York State Energy Conservation Construction Code (hereinafter referred to as “NYStretch-Energy”). NYStretch-Energy is intended as a model energy code for statewide voluntary adoption that anticipates other code advancements culminating in the goal of a statewide Net Zero Energy Code by 2028. Since then, NYSERDA continues to develop the NYStretch-Energy Code 2018 edition (NYSERDA 2018). To support the effort, PNNL conducted energy simulation analysis to quantify the energy savings of proposed commercial provisions of the NYStretch-Energy Code 2018 in New York. The focus of this project is to significantly improve the energy efficiency over existing commercial model energy codes. A key requirement of the proposed stretch code is that it be ‘adoptable’ as an energy code, meaning that it must align with current code scope and limitations, and primarily impact building components that are currently regulated by local building departments. It is largely limited to prescriptive measures, which are what most building departments and design projects are most familiar with. This report describes a set of energy-efficiency measures (EEMs) that demonstrate significant energy savings over ANSI/ASHRAE/IES Standard 90.1-2013 (ASHRAE 2013) across a broad range of commercial building types and all three climate zones in New York. In collaboration with New Building Institute, the EEMs were developed from national model codes and standards, high-performance building codes and standards, regional energy codes, and measures being proposed as part of the on-going code development process. PNNL analyzed these measures using whole building energy models for selected prototype commercial buildings and multifamily buildings representing buildings in New York.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Energy and Energy Cost Savings Analysis of the 2018 IECC for Commercial Buildings

The U.S. Department of Energy (DOE) Building Energy Codes Program supports the development and implementation of building energy codes and standards, which set minimum requirements for energy-efficient design and construction for new and renovated buildings, and impact energy use and greenhouse gas emissions for the life of buildings. As required by federal statute (42 USC 6833), DOE recently issued a determination that ANSI/ASHRAE/IES Standard 90.1-2016 would achieve greater energy efficiency in buildings compared to the 2013 edition of the standard. In support of DOE’s determination, Pacific Northwest National Laboratory (PNNL) conducted an energy savings analysis for Standard 90.1-2016 (DOE 2017). While Standard 90.1 is the national model energy standard for commercial buildings (42 USC 6833), many states have historically adopted the International Energy Conservation Code (IECC) for both residential and commercial buildings. This report provides an assessment as to whether new buildings constructed to the commercial energy efficiency provisions of the 2018 IECC would save energy and energy costs as compared to the 2015 IECC.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Solving the strength-ductility tradeoff in the medium-entropy NiCoCr alloy via interstitial strengthening of carbon

Interstitial solid strengthening is an effective strategy to harden metallic materials, however, it usually deteriorates the ductility. In this work, we report that addition of carbon into the medium-entropy NiCoCr alloy successfully enhances the strength at no expense of ductility. It was found that up to 0.75 at.% carbon was completely solid-solutionized in (NiCoCr )100-x C x (x = 0, 0.10, 0.25, 0.50 and 0.75 at.%) without formation of any carbides. With the increase of carbon content from 0 to 0.75 at.%, the yield and fracture strength were increased from 242 to 347 MPa to 727 and 862 MPa, respectively, whilst the ductility kept as high as about 75%. It is noteworthy that the integral of the stress over strain for the alloy with 0.75 at.% carbon reaches a value of 59 GPa %, surmounting the level of many reported multi-principal elements alloys. Our analysis indicates that carbon addition increases stacking fault energy, thus delaying occurrence of twinning and decreasing the thickness of twin lamellas. At the early deformation stage, carbon decreases the stress localization and stimulates dislocation multiplication. After occurrence of deformation twinning, finer twinning structure in the alloys added with carbon not only can obstacle and trigger more dislocations, but also transfer plastic deformation more efficiently, thus promoting the twinning process, postponing the plastic instability and eventually giving rise to a more pronounced work-hardening. Our conclusions not only have important implications for understanding the solid solution strengthening mechanism in medium-entropy alloys, but also shed lights on developing advanced metallic alloys with a unique combination of strength and ductility.

36 MATERIALS SCIENCE↗

Energy and Energy Cost Savings Analysis of the 2018 IECC for Commercial Buildings

This report provides an assessment as to whether new buildings constructed to the commercial energy-efficiency provisions of the 2018 IECC would save energy and energy costs as compared to the 2015 IECC. The Commercial Energy Efficiency chapter in the 2018 IECC allows users to either follow the provisions in the IECC or use Standard 90.1-2016 as an alternative compliance path. PNNL also compared the energy performance of the 2018 IECC with the corresponding Standard 90.1-2016 to help states and local jurisdictions make informed decisions regarding model code adoption.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗